Wall clock time and date at job start Tue Mar 31 2020 11:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47083 * 2 1 4 4 H 1.09003 * 109.46406 * 299.53325 * 3 2 1 5 5 C 1.50699 * 109.47216 * 59.52858 * 3 2 1 6 6 H 1.07998 * 119.99824 * 54.60904 * 5 3 2 7 7 C 1.37878 * 120.00342 * 234.59983 * 5 3 2 8 8 N 1.31512 * 120.00048 * 145.29968 * 7 5 3 9 9 Si 1.86805 * 119.99968 * 325.30467 * 7 5 3 10 10 H 1.48497 * 109.47015 * 84.29393 * 9 7 5 11 11 H 1.48493 * 109.47034 * 204.29899 * 9 7 5 12 12 H 1.48499 * 109.46819 * 324.29619 * 9 7 5 13 13 N 1.46896 * 109.47208 * 179.53558 * 3 2 1 14 14 C 1.46963 * 110.99595 * 304.12804 * 13 3 2 15 15 C 1.53050 * 109.36146 * 183.18675 * 14 13 3 16 16 H 1.08996 * 109.49179 * 61.56947 * 15 14 13 17 17 C 1.53002 * 109.50487 * 181.62099 * 15 14 13 18 18 N 1.46952 * 109.36647 * 301.59918 * 15 14 13 19 19 C 1.46906 * 111.00158 * 183.19082 * 18 15 14 20 20 C 1.50694 * 109.47264 * 170.00280 * 19 18 15 21 21 C 1.38234 * 120.00359 * 89.99987 * 20 19 18 22 22 C 1.38235 * 120.00114 * 179.72212 * 21 20 19 23 23 C 1.38240 * 120.00089 * 0.26058 * 22 21 20 24 24 C 1.38233 * 119.99572 * 0.02562 * 23 22 21 25 25 C 1.38235 * 120.00603 * 359.96119 * 24 23 22 26 26 C 1.46956 * 110.88166 * 59.32544 * 18 15 14 27 27 C 1.46958 * 111.00109 * 67.92328 * 13 3 2 28 28 H 1.08997 * 109.49130 * 296.80462 * 27 13 3 29 29 C 1.53005 * 109.48664 * 56.85047 * 27 13 3 30 30 H 1.09004 * 109.46900 * 297.29655 * 1 2 3 31 31 H 1.09008 * 109.46759 * 57.29154 * 1 2 3 32 32 H 1.08991 * 109.47228 * 177.29221 * 1 2 3 33 33 H 1.08993 * 109.46933 * 239.99953 * 2 1 3 34 34 H 1.09004 * 109.46727 * 119.99561 * 2 1 3 35 35 H 0.97001 * 120.00364 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.48866 * 63.22430 * 14 13 3 37 37 H 1.08999 * 109.50662 * 303.16932 * 14 13 3 38 38 H 1.08997 * 109.47396 * 179.90416 * 17 15 14 39 39 H 1.09001 * 109.47370 * 299.90439 * 17 15 14 40 40 H 1.09002 * 109.47102 * 59.90133 * 17 15 14 41 41 H 1.09000 * 109.46866 * 49.99964 * 19 18 15 42 42 H 1.08996 * 109.46649 * 290.00253 * 19 18 15 43 43 H 1.08001 * 119.99797 * 0.02562 * 21 20 19 44 44 H 1.07993 * 119.99964 * 180.27382 * 22 21 20 45 45 H 1.07990 * 120.00087 * 179.97438 * 23 22 21 46 46 H 1.08001 * 119.99632 * 179.97438 * 24 23 22 47 47 H 1.08001 * 120.00210 * 180.02562 * 25 24 23 48 48 H 1.08994 * 109.49030 * 60.64357 * 26 18 15 49 49 H 1.08998 * 109.48818 * 180.71731 * 26 18 15 50 50 H 1.09003 * 109.46862 * 59.99551 * 29 27 13 51 51 H 1.08992 * 109.46860 * 179.97438 * 29 27 13 52 52 H 1.08995 * 109.46583 * 299.99870 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6835 1.9539 -0.8942 5 6 1.5282 2.1563 1.2246 6 1 1.7078 1.7421 2.2056 7 6 0.8308 3.3384 1.0925 8 7 -0.1511 3.6186 1.9213 9 14 1.2805 4.5417 -0.2637 10 1 0.5983 4.1467 -1.5222 11 1 0.8500 5.9087 0.1247 12 1 2.7507 4.5261 -0.4717 13 7 3.5090 1.4426 0.0112 14 6 4.0269 0.6759 1.1531 15 6 5.5545 0.7665 1.1741 16 1 5.8555 1.8068 1.2972 17 6 6.0996 -0.0638 2.3379 18 7 6.0909 0.2475 -0.0918 19 6 7.5599 0.2474 -0.0806 20 6 8.0714 -0.5101 -1.2786 21 6 8.3110 0.1550 -2.4665 22 6 8.7857 -0.5389 -3.5637 23 6 9.0157 -1.8991 -3.4747 24 6 8.7705 -2.5654 -2.2886 25 6 8.2961 -1.8714 -1.1912 26 6 5.5731 1.0142 -1.2336 27 6 4.0454 0.9235 -1.2547 28 1 3.7441 -0.1167 -1.3780 29 6 3.5008 1.7542 -2.4185 30 1 -0.3633 0.4713 0.9133 31 1 -0.3633 0.5554 -0.8648 32 1 -0.3633 -1.0264 -0.0485 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 -0.6421 4.4500 1.8282 36 1 3.7257 -0.3673 1.0572 37 1 3.6254 1.0867 2.0794 38 1 7.1876 -0.0003 2.3514 39 1 5.7015 0.3213 3.2767 40 1 5.7978 -1.1039 2.2149 41 1 7.9162 -0.2314 0.8315 42 1 7.9235 1.2743 -0.1177 43 1 8.1319 1.2179 -2.5358 44 1 8.9770 -0.0184 -4.4904 45 1 9.3862 -2.4413 -4.3320 46 1 8.9498 -3.6281 -2.2192 47 1 8.1049 -2.3919 -0.2644 48 1 5.8742 2.0573 -1.1378 49 1 5.9745 0.6030 -2.1598 50 1 3.8029 2.7942 -2.2952 51 1 3.8991 1.3692 -3.3572 52 1 2.4127 1.6910 -2.4320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255164871.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:12 Heat of formation + Delta-G solvation = 38.689448 kcal Electronic energy + Delta-G solvation = -28216.312190 eV Core-core repulsion = 24794.621927 eV Total energy + Delta-G solvation = -3421.690263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.88787 -38.81176 -36.31499 -33.32109 -32.89039 -31.83367 -30.98098 -30.66722 -29.06523 -27.52034 -26.01651 -24.56753 -23.87628 -22.79758 -22.50562 -21.16236 -20.72758 -19.70969 -18.18583 -17.06031 -16.70886 -15.68932 -15.56129 -15.25079 -14.77761 -14.70421 -14.37163 -13.94286 -13.86846 -13.49981 -13.43982 -13.19640 -12.84432 -12.68791 -12.58202 -12.49864 -12.27544 -11.78231 -11.68140 -11.47473 -11.39933 -11.24455 -11.12315 -11.00904 -10.92580 -10.76530 -10.55816 -10.52564 -10.40736 -10.09544 -9.99699 -9.69261 -9.48336 -9.11849 -8.95976 -8.80027 -8.09023 -8.03672 -7.08713 -6.20715 -3.96062 1.28006 1.34887 3.33711 3.45296 3.61735 3.65312 4.26810 4.51051 4.73491 4.74393 4.80672 4.93084 5.03824 5.18908 5.20323 5.32106 5.37267 5.44034 5.46930 5.61571 5.68143 5.70410 5.76342 5.83068 5.93896 5.97782 6.00541 6.03412 6.05076 6.11338 6.16054 6.19566 6.28649 6.37655 6.41837 6.43316 6.43907 6.48445 6.57056 6.60151 6.70219 6.73954 6.81591 6.88207 6.93777 7.07197 7.24428 7.31878 7.40541 7.41400 7.76728 8.09456 8.34145 8.65575 8.99674 9.58452 10.91253 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.003815 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.726770 B = 7336.975413 C = 7614.380874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.138 4.138 3 C 0.184 3.816 4 H 0.049 0.951 5 C -0.510 4.510 6 H 0.069 0.931 7 C 0.095 3.905 8 N -0.865 5.865 9 Si 0.849 3.151 10 H -0.282 1.282 11 H -0.294 1.294 12 H -0.256 1.256 13 N -0.526 5.526 14 C 0.074 3.926 15 C 0.081 3.919 16 H 0.046 0.954 17 C -0.145 4.145 18 N -0.527 5.527 19 C 0.085 3.915 20 C -0.068 4.068 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.099 4.099 26 C 0.064 3.936 27 C 0.075 3.925 28 H 0.040 0.960 29 C -0.146 4.146 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.025 0.975 33 H 0.028 0.972 34 H 0.050 0.950 35 H 0.263 0.737 36 H 0.031 0.969 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.087 0.913 42 H 0.038 0.962 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.035 0.965 49 H 0.071 0.929 50 H 0.057 0.943 51 H 0.048 0.952 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.423 -9.080 -7.323 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.178 4.178 3 C 0.079 3.921 4 H 0.067 0.933 5 C -0.548 4.548 6 H 0.087 0.913 7 C -0.111 4.111 8 N -0.499 5.499 9 Si 0.675 3.325 10 H -0.208 1.208 11 H -0.221 1.221 12 H -0.180 1.180 13 N -0.251 5.251 14 C -0.054 4.054 15 C -0.027 4.027 16 H 0.064 0.936 17 C -0.203 4.203 18 N -0.252 5.252 19 C -0.042 4.042 20 C -0.069 4.069 21 C -0.133 4.133 22 C -0.140 4.140 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.118 4.118 26 C -0.064 4.064 27 C -0.034 4.034 28 H 0.058 0.942 29 C -0.204 4.204 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.106 0.894 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.057 0.943 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.053 0.947 49 H 0.089 0.911 50 H 0.076 0.924 51 H 0.067 0.933 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.265 -8.923 -7.232 19.912 hybrid contribution 0.194 0.812 -0.828 1.176 sum 16.460 -8.112 -8.060 20.042 Atomic orbital electron populations 1.21543 0.96058 0.98321 1.02914 1.22087 0.96567 1.00420 0.98713 1.19854 0.82149 0.91828 0.98271 0.93265 1.20490 1.34146 1.07573 0.92554 0.91292 1.24891 0.92835 0.97967 0.95396 1.70213 1.15962 1.23998 1.39775 0.87330 0.81147 0.80885 0.83121 1.20780 1.22082 1.18001 1.63183 1.11040 1.51343 0.99523 1.21968 0.90841 0.96030 0.96582 1.21782 0.96283 0.96539 0.88114 0.93615 1.21883 0.99977 1.00761 0.97654 1.62202 1.05102 1.54540 1.03356 1.21148 0.88985 0.97934 0.96136 1.19820 0.97814 0.94176 0.95076 1.21098 0.99402 0.99922 0.92835 1.21094 0.99938 0.94579 0.98433 1.21101 1.00885 0.94669 0.97756 1.21129 0.99920 0.99716 0.93355 1.21018 0.98378 0.93617 0.98792 1.22247 0.95389 0.95411 0.93315 1.21604 0.92731 0.96798 0.92310 0.94236 1.21865 1.01521 1.00490 0.96489 0.90588 0.94362 0.95591 0.95305 0.93100 0.92714 0.95077 0.89444 0.93004 0.91936 0.92075 0.89532 0.94342 0.86399 0.86354 0.86469 0.86330 0.86090 0.94652 0.91071 0.92364 0.93286 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.61 37.16 0.36 -2.34 16 2 C -0.14 -2.88 4.73 -26.73 -0.13 -3.01 16 3 C 0.18 4.19 1.39 -68.86 -0.10 4.10 16 4 H 0.05 1.18 3.87 -51.93 -0.20 0.98 16 5 C -0.51 -13.47 6.78 -34.44 -0.23 -13.71 16 6 H 0.07 1.97 7.19 -52.49 -0.38 1.60 16 7 C 0.10 2.62 5.42 -17.82 -0.10 2.53 16 8 N -0.87 -25.07 13.96 55.43 0.77 -24.30 16 9 Si 0.85 21.10 27.42 -169.99 -4.66 16.44 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.26 -6.38 7.11 56.52 0.40 -5.97 16 13 N -0.53 -10.87 4.48 -219.93 -0.99 -11.85 16 14 C 0.07 1.41 4.10 -3.76 -0.02 1.39 16 15 C 0.08 1.28 2.56 -67.66 -0.17 1.11 16 16 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.14 -1.87 8.89 37.16 0.33 -1.54 16 18 N -0.53 -7.84 4.52 -227.93 -1.03 -8.87 16 19 C 0.09 1.06 4.88 -4.98 -0.02 1.04 16 20 C -0.07 -0.82 4.89 -104.62 -0.51 -1.33 16 21 C -0.11 -1.30 7.92 -39.58 -0.31 -1.61 16 22 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 23 C -0.13 -1.23 10.05 -39.58 -0.40 -1.63 16 24 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 25 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 26 C 0.06 1.02 4.54 -3.76 -0.02 1.00 16 27 C 0.07 1.35 2.25 -67.65 -0.15 1.20 16 28 H 0.04 0.75 6.69 -51.93 -0.35 0.40 16 29 C -0.15 -2.52 8.89 37.16 0.33 -2.19 16 30 H 0.08 1.77 7.30 -51.93 -0.38 1.39 16 31 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.03 0.56 6.70 -51.93 -0.35 0.22 16 34 H 0.05 1.07 6.39 -51.93 -0.33 0.74 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.03 0.60 6.42 -51.93 -0.33 0.27 16 37 H 0.09 1.82 6.61 -51.93 -0.34 1.48 16 38 H 0.05 0.58 6.15 -51.93 -0.32 0.26 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.98 5.67 -51.93 -0.29 0.69 16 42 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 43 H 0.12 1.27 7.99 -52.49 -0.42 0.85 16 44 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 47 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 48 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 1.05 5.95 -51.93 -0.31 0.74 16 50 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 52 H 0.06 1.14 6.19 -51.93 -0.32 0.82 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -28.30 385.27 -11.37 -39.67 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.95 Total: 2.89 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -2.32 Total: -19.79 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -1.24 Total: -45.02 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.66 Total: 16.44 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.30 -11.37 -39.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164871.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.358 kcal (2) G-P(sol) polarization free energy of solvation -28.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds