Wall clock time and date at job start Tue Mar 31 2020 11:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.47083 * 2 1 4 4 H 1.09003 * 109.46406 * 299.53325 * 3 2 1 5 5 C 1.50699 * 109.47216 * 59.52858 * 3 2 1 6 6 H 1.07998 * 119.99824 * 54.60904 * 5 3 2 7 7 C 1.37878 * 120.00342 * 234.59983 * 5 3 2 8 8 N 1.31512 * 120.00048 * 145.29968 * 7 5 3 9 9 Si 1.86805 * 119.99968 * 325.30467 * 7 5 3 10 10 H 1.48497 * 109.47015 * 84.29393 * 9 7 5 11 11 H 1.48493 * 109.47034 * 204.29899 * 9 7 5 12 12 H 1.48499 * 109.46819 * 324.29619 * 9 7 5 13 13 N 1.46896 * 109.47208 * 179.53558 * 3 2 1 14 14 C 1.46963 * 110.99595 * 304.12804 * 13 3 2 15 15 C 1.53050 * 109.36146 * 183.18675 * 14 13 3 16 16 H 1.08996 * 109.49179 * 61.56947 * 15 14 13 17 17 C 1.53002 * 109.50487 * 181.62099 * 15 14 13 18 18 N 1.46952 * 109.36647 * 301.59918 * 15 14 13 19 19 C 1.46906 * 111.00158 * 183.19082 * 18 15 14 20 20 C 1.50694 * 109.47264 * 170.00280 * 19 18 15 21 21 C 1.38234 * 120.00359 * 89.99987 * 20 19 18 22 22 C 1.38235 * 120.00114 * 179.72212 * 21 20 19 23 23 C 1.38240 * 120.00089 * 0.26058 * 22 21 20 24 24 C 1.38233 * 119.99572 * 0.02562 * 23 22 21 25 25 C 1.38235 * 120.00603 * 359.96119 * 24 23 22 26 26 C 1.46956 * 110.88166 * 59.32544 * 18 15 14 27 27 C 1.46958 * 111.00109 * 67.92328 * 13 3 2 28 28 H 1.08997 * 109.49130 * 296.80462 * 27 13 3 29 29 C 1.53005 * 109.48664 * 56.85047 * 27 13 3 30 30 H 1.09004 * 109.46900 * 297.29655 * 1 2 3 31 31 H 1.09008 * 109.46759 * 57.29154 * 1 2 3 32 32 H 1.08991 * 109.47228 * 177.29221 * 1 2 3 33 33 H 1.08993 * 109.46933 * 239.99953 * 2 1 3 34 34 H 1.09004 * 109.46727 * 119.99561 * 2 1 3 35 35 H 0.97001 * 120.00364 * 180.02562 * 8 7 5 36 36 H 1.09003 * 109.48866 * 63.22430 * 14 13 3 37 37 H 1.08999 * 109.50662 * 303.16932 * 14 13 3 38 38 H 1.08997 * 109.47396 * 179.90416 * 17 15 14 39 39 H 1.09001 * 109.47370 * 299.90439 * 17 15 14 40 40 H 1.09002 * 109.47102 * 59.90133 * 17 15 14 41 41 H 1.09000 * 109.46866 * 49.99964 * 19 18 15 42 42 H 1.08996 * 109.46649 * 290.00253 * 19 18 15 43 43 H 1.08001 * 119.99797 * 0.02562 * 21 20 19 44 44 H 1.07993 * 119.99964 * 180.27382 * 22 21 20 45 45 H 1.07990 * 120.00087 * 179.97438 * 23 22 21 46 46 H 1.08001 * 119.99632 * 179.97438 * 24 23 22 47 47 H 1.08001 * 120.00210 * 180.02562 * 25 24 23 48 48 H 1.08994 * 109.49030 * 60.64357 * 26 18 15 49 49 H 1.08998 * 109.48818 * 180.71731 * 26 18 15 50 50 H 1.09003 * 109.46862 * 59.99551 * 29 27 13 51 51 H 1.08992 * 109.46860 * 179.97438 * 29 27 13 52 52 H 1.08995 * 109.46583 * 299.99870 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6835 1.9539 -0.8942 5 6 1.5282 2.1563 1.2246 6 1 1.7078 1.7421 2.2056 7 6 0.8308 3.3384 1.0925 8 7 -0.1511 3.6186 1.9213 9 14 1.2805 4.5417 -0.2637 10 1 0.5983 4.1467 -1.5222 11 1 0.8500 5.9087 0.1247 12 1 2.7507 4.5261 -0.4717 13 7 3.5090 1.4426 0.0112 14 6 4.0269 0.6759 1.1531 15 6 5.5545 0.7665 1.1741 16 1 5.8555 1.8068 1.2972 17 6 6.0996 -0.0638 2.3379 18 7 6.0909 0.2475 -0.0918 19 6 7.5599 0.2474 -0.0806 20 6 8.0714 -0.5101 -1.2786 21 6 8.3110 0.1550 -2.4665 22 6 8.7857 -0.5389 -3.5637 23 6 9.0157 -1.8991 -3.4747 24 6 8.7705 -2.5654 -2.2886 25 6 8.2961 -1.8714 -1.1912 26 6 5.5731 1.0142 -1.2336 27 6 4.0454 0.9235 -1.2547 28 1 3.7441 -0.1167 -1.3780 29 6 3.5008 1.7542 -2.4185 30 1 -0.3633 0.4713 0.9133 31 1 -0.3633 0.5554 -0.8648 32 1 -0.3633 -1.0264 -0.0485 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 -0.6421 4.4500 1.8282 36 1 3.7257 -0.3673 1.0572 37 1 3.6254 1.0867 2.0794 38 1 7.1876 -0.0003 2.3514 39 1 5.7015 0.3213 3.2767 40 1 5.7978 -1.1039 2.2149 41 1 7.9162 -0.2314 0.8315 42 1 7.9235 1.2743 -0.1177 43 1 8.1319 1.2179 -2.5358 44 1 8.9770 -0.0184 -4.4904 45 1 9.3862 -2.4413 -4.3320 46 1 8.9498 -3.6281 -2.2192 47 1 8.1049 -2.3919 -0.2644 48 1 5.8742 2.0573 -1.1378 49 1 5.9745 0.6030 -2.1598 50 1 3.8029 2.7942 -2.2952 51 1 3.8991 1.3692 -3.3572 52 1 2.4127 1.6910 -2.4320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255164871.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:10 Heat of formation + Delta-G solvation = 22.815560 kcal Electronic energy + Delta-G solvation = -28217.000533 eV Core-core repulsion = 24794.621927 eV Total energy + Delta-G solvation = -3422.378607 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.08153 -39.87986 -37.72367 -34.99076 -34.15010 -33.64186 -31.97366 -31.69642 -30.34479 -29.05707 -27.53474 -25.93159 -25.20831 -24.36670 -23.39428 -22.33303 -22.01072 -21.07566 -19.81892 -18.92360 -17.59679 -16.96787 -16.78352 -16.36214 -16.14613 -16.09813 -15.80657 -15.39635 -15.23969 -14.89001 -14.75284 -14.58656 -14.22825 -14.00551 -13.78091 -13.54065 -13.49055 -13.32811 -12.92146 -12.85010 -12.78967 -12.69666 -12.62646 -12.51416 -12.24188 -12.14551 -12.00129 -11.89827 -11.82729 -11.76374 -11.66957 -11.35873 -11.17468 -10.89417 -10.18535 -9.74067 -9.63924 -9.23542 -8.73475 -8.34907 -6.10569 0.48277 0.57473 1.32640 1.40925 1.59544 2.42315 2.75778 2.90991 3.20834 3.43160 3.82911 3.91472 4.00354 4.04893 4.21914 4.22840 4.31710 4.34591 4.35093 4.40065 4.43527 4.47671 4.49568 4.61891 4.69240 4.71139 4.73268 4.78754 4.80960 4.82431 4.87231 4.99263 5.02465 5.04752 5.11243 5.15210 5.16079 5.20072 5.23341 5.27446 5.35607 5.43472 5.51192 5.61254 5.62810 5.68500 5.77325 5.80204 6.09587 6.13746 6.19823 6.23906 6.64019 6.75771 6.90096 7.44064 8.81063 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018216 B = 0.003815 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.726770 B = 7336.975413 C = 7614.380874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.131 4.131 3 C 0.190 3.810 4 H 0.042 0.958 5 C -0.503 4.503 6 H 0.034 0.966 7 C 0.048 3.952 8 N -0.909 5.909 9 Si 0.906 3.094 10 H -0.272 1.272 11 H -0.295 1.295 12 H -0.257 1.257 13 N -0.542 5.542 14 C 0.080 3.920 15 C 0.087 3.913 16 H 0.030 0.970 17 C -0.137 4.137 18 N -0.528 5.528 19 C 0.089 3.911 20 C -0.084 4.084 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.128 4.128 25 C -0.111 4.111 26 C 0.074 3.926 27 C 0.075 3.925 28 H 0.035 0.965 29 C -0.143 4.143 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.028 0.972 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.037 0.963 43 H 0.119 0.881 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.139 0.861 47 H 0.127 0.873 48 H 0.025 0.975 49 H 0.087 0.913 50 H 0.047 0.953 51 H 0.080 0.920 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.655 -10.544 -9.619 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.171 4.171 3 C 0.084 3.916 4 H 0.060 0.940 5 C -0.541 4.541 6 H 0.052 0.948 7 C -0.154 4.154 8 N -0.546 5.546 9 Si 0.731 3.269 10 H -0.197 1.197 11 H -0.222 1.222 12 H -0.181 1.181 13 N -0.266 5.266 14 C -0.048 4.048 15 C -0.021 4.021 16 H 0.048 0.952 17 C -0.195 4.195 18 N -0.253 5.253 19 C -0.037 4.037 20 C -0.084 4.084 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.129 4.129 26 C -0.054 4.054 27 C -0.033 4.033 28 H 0.053 0.947 29 C -0.201 4.201 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.117 0.883 42 H 0.055 0.945 43 H 0.137 0.863 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.157 0.843 47 H 0.145 0.855 48 H 0.044 0.956 49 H 0.105 0.895 50 H 0.067 0.933 51 H 0.099 0.901 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 18.520 -10.394 -9.540 23.281 hybrid contribution -0.438 1.161 -0.109 1.245 sum 18.081 -9.233 -9.649 22.478 Atomic orbital electron populations 1.21454 0.95868 0.99847 1.01063 1.21978 0.96649 0.99204 0.99261 1.19655 0.83706 0.92344 0.95894 0.93991 1.20615 1.33546 1.07407 0.92534 0.94817 1.25489 0.92859 0.99418 0.97635 1.70297 1.17410 1.24642 1.42220 0.86419 0.80598 0.78833 0.81054 1.19739 1.22170 1.18066 1.62928 1.09656 1.52625 1.01387 1.21872 0.93135 0.95084 0.94719 1.21652 0.94032 0.96437 0.89997 0.95216 1.21820 1.01304 1.00143 0.96194 1.62201 1.06906 1.53839 1.02341 1.21165 0.87001 0.98226 0.97340 1.19807 0.98995 0.94610 0.95008 1.21220 0.99983 1.00160 0.93166 1.21372 0.99397 0.95034 0.98812 1.21447 1.00044 0.94688 0.98444 1.21429 0.99254 1.00829 0.93108 1.21194 0.98655 0.93480 0.99601 1.22130 0.93666 0.95151 0.94494 1.21675 0.94270 0.96415 0.90988 0.94667 1.21854 1.00669 0.99938 0.97663 0.94062 0.94296 0.92584 0.93361 0.93706 0.92661 0.95430 0.92403 0.90697 0.92028 0.91823 0.88321 0.94477 0.86347 0.84561 0.84184 0.84346 0.85508 0.95648 0.89456 0.93348 0.90101 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 9.61 71.98 0.69 -4.43 16 2 C -0.13 -5.44 4.73 30.60 0.14 -5.30 16 3 C 0.19 8.74 1.39 44.17 0.06 8.80 16 4 H 0.04 2.00 3.87 -2.39 -0.01 1.99 16 5 C -0.50 -27.56 6.78 25.60 0.17 -27.38 16 6 H 0.03 2.05 7.19 -2.91 -0.02 2.03 16 7 C 0.05 2.72 5.42 84.66 0.46 3.18 16 8 N -0.91 -54.56 13.96 21.45 0.30 -54.26 16 9 Si 0.91 44.38 27.42 68.60 1.88 46.26 16 10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 12 H -0.26 -12.48 7.11 99.48 0.71 -11.78 16 13 N -0.54 -22.39 4.48 -849.74 -3.81 -26.20 16 14 C 0.08 3.09 4.10 86.31 0.35 3.45 16 15 C 0.09 2.72 2.56 44.92 0.12 2.84 16 16 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 17 C -0.14 -3.36 8.89 71.98 0.64 -2.72 16 18 N -0.53 -14.88 4.52 -875.04 -3.95 -18.83 16 19 C 0.09 2.05 4.88 85.55 0.42 2.47 16 20 C -0.08 -1.81 4.89 -19.87 -0.10 -1.91 16 21 C -0.13 -2.59 7.92 22.27 0.18 -2.42 16 22 C -0.13 -2.26 10.05 22.27 0.22 -2.03 16 23 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 24 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 25 C -0.11 -2.20 9.70 22.27 0.22 -1.99 16 26 C 0.07 2.21 4.54 86.31 0.39 2.60 16 27 C 0.08 2.62 2.25 44.92 0.10 2.72 16 28 H 0.04 1.27 6.69 -2.39 -0.02 1.25 16 29 C -0.14 -4.69 8.89 71.98 0.64 -4.05 16 30 H 0.04 1.96 7.30 -2.38 -0.02 1.95 16 31 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.82 6.70 -2.39 -0.02 1.80 16 34 H 0.04 1.90 6.39 -2.38 -0.02 1.88 16 35 H 0.26 15.00 8.31 -92.71 -0.77 14.22 16 36 H 0.03 1.07 6.42 -2.39 -0.02 1.06 16 37 H 0.06 2.54 6.61 -2.39 -0.02 2.52 16 38 H 0.07 1.50 6.15 -2.39 -0.01 1.48 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.10 1.99 5.67 -2.39 -0.01 1.98 16 42 H 0.04 0.87 8.06 -2.39 -0.02 0.85 16 43 H 0.12 2.33 7.99 -2.91 -0.02 2.31 16 44 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.14 1.58 8.06 -2.92 -0.02 1.56 16 46 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 47 H 0.13 2.28 8.06 -2.91 -0.02 2.26 16 48 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.09 2.36 5.95 -2.39 -0.01 2.35 16 50 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 51 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 52 H 0.05 1.68 6.19 -2.39 -0.01 1.66 16 Total: -1.00 -62.39 385.27 0.45 -61.94 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.88 Total: 21.11 kcal Atomic # 6 Polarization: -35.18 SS G_CDS: 5.16 Total: -30.02 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -7.46 Total: -99.29 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Total: -62.39 0.45 -61.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255164871.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.757 kcal (2) G-P(sol) polarization free energy of solvation -62.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds