Wall clock time and date at job start Tue Mar 31 2020 11:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47171 * 2 1 4 4 H 1.09000 * 109.46777 * 53.84660 * 3 2 1 5 5 C 1.50703 * 109.47100 * 173.84473 * 3 2 1 6 6 H 1.08001 * 119.99695 * 120.00414 * 5 3 2 7 7 C 1.37875 * 120.00088 * 300.00194 * 5 3 2 8 8 N 1.31508 * 120.00287 * 180.02562 * 7 5 3 9 9 Si 1.86808 * 119.99835 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47088 * 90.00199 * 9 7 5 11 11 H 1.48500 * 109.46673 * 209.99952 * 9 7 5 12 12 H 1.48496 * 109.47259 * 329.99907 * 9 7 5 13 13 N 1.46902 * 109.47341 * 293.84669 * 3 2 1 14 14 C 1.46899 * 111.00060 * 140.62912 * 13 3 2 15 15 C 1.52996 * 109.52246 * 54.64809 * 14 13 3 16 16 C 1.53119 * 109.52253 * 294.51753 * 14 13 3 17 17 C 1.53046 * 109.27152 * 182.50204 * 16 14 13 18 18 N 1.46849 * 109.57391 * 59.09151 * 17 16 14 19 19 C 1.46901 * 110.99615 * 174.18942 * 18 17 16 20 20 C 1.50696 * 109.47137 * 294.20677 * 19 18 17 21 21 C 1.38243 * 119.99876 * 269.73026 * 20 19 18 22 22 C 1.38230 * 119.99820 * 179.79217 * 21 20 19 23 23 C 1.38231 * 120.00113 * 0.43732 * 22 21 20 24 24 C 1.38232 * 120.00197 * 359.81503 * 23 22 21 25 25 C 1.38227 * 120.00206 * 90.00331 * 20 19 18 26 26 C 1.46842 * 111.19430 * 298.28338 * 18 17 16 27 27 C 1.53040 * 109.52290 * 61.74513 * 26 18 17 28 28 H 1.09001 * 109.46814 * 306.22064 * 1 2 3 29 29 H 1.08997 * 109.47159 * 66.21999 * 1 2 3 30 30 H 1.08998 * 109.47142 * 186.22763 * 1 2 3 31 31 H 1.09006 * 109.46720 * 240.00180 * 2 1 3 32 32 H 1.09000 * 109.47280 * 120.00143 * 2 1 3 33 33 H 0.96995 * 120.00562 * 179.97438 * 8 7 5 34 34 H 1.00898 * 110.99619 * 16.67245 * 13 3 2 35 35 H 1.09001 * 109.47236 * 57.44910 * 15 14 13 36 36 H 1.08993 * 109.47227 * 177.44866 * 15 14 13 37 37 H 1.09007 * 109.47326 * 297.44904 * 15 14 13 38 38 H 1.08997 * 109.50684 * 302.38342 * 16 14 13 39 39 H 1.09006 * 109.50163 * 62.50528 * 16 14 13 40 40 H 1.08996 * 109.41094 * 299.06710 * 17 16 14 41 41 H 1.09006 * 109.46010 * 179.13486 * 17 16 14 42 42 H 1.09000 * 109.47232 * 54.20990 * 19 18 17 43 43 H 1.09005 * 109.46874 * 174.20523 * 19 18 17 44 44 H 1.08004 * 119.99534 * 359.97438 * 21 20 19 45 45 H 1.08002 * 119.99642 * 180.27426 * 22 21 20 46 46 H 1.08007 * 120.00428 * 179.83879 * 23 22 21 47 47 H 1.08003 * 120.00457 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.00106 * 359.97438 * 25 20 19 49 49 H 1.08999 * 109.46680 * 301.72794 * 26 18 17 50 50 H 1.09005 * 109.45572 * 181.75306 * 26 18 17 51 51 H 1.09001 * 109.50037 * 180.87673 * 27 26 18 52 52 H 1.09002 * 109.53692 * 60.77968 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5895 1.9871 0.8298 5 6 3.5393 1.4452 0.1523 6 1 4.1593 1.8846 -0.6151 7 6 4.1196 0.8867 1.2714 8 7 5.4279 0.8895 1.4047 9 14 3.0472 0.1273 2.5992 10 1 2.8310 -1.3108 2.2986 11 1 3.7202 0.2621 3.9161 12 1 1.7380 0.8271 2.6385 13 7 1.6754 2.0909 -1.2668 14 6 1.2624 3.4832 -1.0458 15 6 2.3638 4.2293 -0.2901 16 6 -0.0297 3.5095 -0.2246 17 6 -0.4884 4.9592 -0.0510 18 7 -0.7114 5.5659 -1.3695 19 6 -1.2840 6.9125 -1.2393 20 6 -2.6654 6.8156 -0.6450 21 6 -3.7658 6.6848 -1.4715 22 6 -5.0325 6.5917 -0.9262 23 6 -5.1998 6.6384 0.4452 24 6 -4.1000 6.7744 1.2715 25 6 -2.8328 6.8633 0.7263 26 6 0.5277 5.5948 -2.1570 27 6 1.0160 4.1640 -2.3949 28 1 -0.3633 0.6073 0.8291 29 1 -0.3633 0.4144 -0.9404 30 1 -0.3633 -1.0216 0.1115 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 5.8361 0.4970 2.1921 34 1 0.9543 1.5712 -1.7444 35 1 3.2942 4.1732 -0.8552 36 1 2.0763 5.2733 -0.1663 37 1 2.5056 3.7729 0.6896 38 1 -0.8029 2.9438 -0.7445 39 1 0.1518 3.0646 0.7538 40 1 0.2788 5.5205 0.4822 41 1 -1.4166 4.9805 0.5202 42 1 -0.6501 7.5155 -0.5891 43 1 -1.3434 7.3787 -2.2228 44 1 -3.6354 6.6525 -2.5431 45 1 -5.8918 6.4850 -1.5717 46 1 -6.1898 6.5682 0.8712 47 1 -4.2307 6.8113 2.3429 48 1 -1.9735 6.9695 1.3718 49 1 1.2902 6.1532 -1.6141 50 1 0.3375 6.0777 -3.1156 51 1 1.9440 4.1865 -2.9661 52 1 0.2602 3.6085 -2.9502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:25 Heat of formation + Delta-G solvation = 33.265421 kcal Electronic energy + Delta-G solvation = -27887.356795 eV Core-core repulsion = 24465.431329 eV Total energy + Delta-G solvation = -3421.925467 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.04120 -39.01859 -36.65414 -34.12876 -32.04782 -31.58553 -31.12732 -30.53527 -29.34948 -27.32763 -27.03687 -25.03185 -23.25898 -22.69706 -22.49230 -21.84051 -20.92823 -19.70498 -17.96889 -16.91519 -16.70566 -16.26506 -15.49624 -15.42048 -15.05475 -14.71543 -14.45609 -14.11584 -14.01965 -13.83109 -13.57419 -13.33453 -12.93201 -12.76937 -12.66325 -12.48950 -12.23249 -11.98534 -11.79523 -11.74612 -11.38844 -11.24473 -11.17412 -11.07437 -11.04378 -10.79408 -10.68735 -10.49459 -10.33304 -10.10807 -9.92107 -9.74848 -9.31299 -9.11395 -9.02861 -8.91766 -8.47419 -8.19112 -7.24119 -5.98874 -3.93517 1.18869 1.26645 3.27203 3.37491 3.39607 3.55107 4.13211 4.44045 4.61188 4.69692 4.85457 4.88594 4.96103 5.09183 5.12564 5.25117 5.29110 5.35244 5.38336 5.45550 5.52557 5.54611 5.67802 5.74172 5.76474 5.85481 5.85583 5.89540 5.93259 5.95540 5.98755 6.01700 6.20551 6.31185 6.34858 6.36100 6.42041 6.45545 6.49593 6.51388 6.56923 6.64384 6.72218 6.82566 6.84967 6.93755 7.09550 7.17388 7.24360 7.26941 7.81252 8.06219 8.38352 8.83014 9.15862 9.65146 11.14739 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.003488 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.883392 B = 8024.850430 C = 8526.359137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.143 4.143 3 C 0.188 3.812 4 H 0.013 0.987 5 C -0.483 4.483 6 H 0.081 0.919 7 C 0.064 3.936 8 N -0.904 5.904 9 Si 0.878 3.122 10 H -0.280 1.280 11 H -0.299 1.299 12 H -0.269 1.269 13 N -0.664 5.664 14 C 0.121 3.879 15 C -0.130 4.130 16 C -0.142 4.142 17 C 0.056 3.944 18 N -0.530 5.530 19 C 0.091 3.909 20 C -0.072 4.072 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.114 4.114 26 C 0.057 3.943 27 C -0.099 4.099 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.261 0.739 34 H 0.320 0.680 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.041 0.959 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.119 0.881 49 H 0.038 0.962 50 H 0.070 0.930 51 H 0.074 0.926 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.859 12.467 -4.311 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.181 4.181 3 C 0.080 3.920 4 H 0.031 0.969 5 C -0.522 4.522 6 H 0.099 0.901 7 C -0.136 4.136 8 N -0.543 5.543 9 Si 0.709 3.291 10 H -0.208 1.208 11 H -0.227 1.227 12 H -0.194 1.194 13 N -0.293 5.293 14 C 0.030 3.970 15 C -0.188 4.188 16 C -0.182 4.182 17 C -0.072 4.072 18 N -0.255 5.255 19 C -0.036 4.036 20 C -0.072 4.072 21 C -0.118 4.118 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.132 4.132 26 C -0.071 4.071 27 C -0.137 4.137 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.138 0.862 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.099 0.901 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.057 0.943 50 H 0.088 0.912 51 H 0.092 0.908 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.346 12.273 -4.614 22.550 hybrid contribution -0.861 -0.316 1.794 2.015 sum -19.207 11.958 -2.819 22.800 Atomic orbital electron populations 1.21924 0.98174 1.00404 1.00774 1.22268 0.92979 1.01115 1.01721 1.19687 0.96759 0.88593 0.86986 0.96932 1.21090 0.89294 1.36506 1.05300 0.90084 1.24958 0.94656 0.96228 0.97802 1.69878 1.09127 1.46378 1.28927 0.87021 0.80877 0.79829 0.81412 1.20757 1.22670 1.19419 1.60735 1.43435 1.00650 1.24506 1.20834 0.92100 0.90745 0.93370 1.21882 0.98240 0.96842 1.01798 1.22407 0.98729 0.95438 1.01612 1.22161 0.99792 0.95706 0.89528 1.61981 1.27962 1.18760 1.16806 1.21031 0.91642 0.90537 1.00385 1.19771 0.95015 0.99112 0.93322 1.21016 0.91986 0.99040 0.99769 1.21138 0.97226 1.00548 0.95187 1.21126 0.98656 1.00634 0.93829 1.21118 0.92685 1.00462 0.99726 1.21101 0.97295 1.00193 0.94646 1.22156 0.89749 0.98031 0.97167 1.21553 1.00841 0.93942 0.97380 0.93589 0.93206 0.93811 0.91588 0.92877 0.92897 0.86192 0.91732 0.94627 0.91309 0.91950 0.91307 0.94610 0.91097 0.94127 0.90062 0.86045 0.86250 0.86376 0.86248 0.86338 0.94349 0.91199 0.90778 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.70 37.16 0.36 -2.32 16 2 C -0.14 -3.02 4.88 -26.73 -0.13 -3.15 16 3 C 0.19 4.24 0.80 -68.86 -0.06 4.18 16 4 H 0.01 0.31 4.12 -51.93 -0.21 0.10 16 5 C -0.48 -13.22 7.97 -34.44 -0.27 -13.49 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.05 16 7 C 0.06 1.82 5.45 -17.82 -0.10 1.73 16 8 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 9 Si 0.88 21.85 24.42 -169.99 -4.15 17.70 16 10 H -0.28 -6.86 6.82 56.52 0.39 -6.47 16 11 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.27 -6.41 6.53 56.52 0.37 -6.04 16 13 N -0.66 -13.01 5.94 -94.13 -0.56 -13.56 16 14 C 0.12 2.06 0.69 -131.48 -0.09 1.97 16 15 C -0.13 -2.43 6.96 37.16 0.26 -2.17 16 16 C -0.14 -2.26 4.77 -26.65 -0.13 -2.39 16 17 C 0.06 0.78 4.91 -3.83 -0.02 0.76 16 18 N -0.53 -6.63 4.65 -236.11 -1.10 -7.73 16 19 C 0.09 0.97 5.12 -4.98 -0.03 0.94 16 20 C -0.07 -0.77 4.89 -104.63 -0.51 -1.28 16 21 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 22 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 23 C -0.12 -1.14 10.05 -39.59 -0.40 -1.54 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.11 -1.20 7.88 -39.58 -0.31 -1.51 16 26 C 0.06 0.71 5.21 -3.83 -0.02 0.69 16 27 C -0.10 -1.43 5.19 -26.65 -0.14 -1.57 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.77 6.82 -51.93 -0.35 0.42 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.05 1.22 3.22 -51.93 -0.17 1.05 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.32 5.78 6.68 -39.29 -0.26 5.51 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.03 0.57 4.93 -51.93 -0.26 0.32 16 37 H 0.07 1.48 6.23 -51.93 -0.32 1.16 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 1.22 6.41 -51.93 -0.33 0.88 16 40 H 0.04 0.51 6.57 -51.93 -0.34 0.17 16 41 H 0.07 0.96 5.75 -51.93 -0.30 0.66 16 42 H 0.04 0.43 8.07 -51.93 -0.42 0.01 16 43 H 0.08 0.76 7.93 -51.93 -0.41 0.35 16 44 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.84 8.06 -52.48 -0.42 0.41 16 47 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 48 H 0.12 1.17 7.95 -52.49 -0.42 0.76 16 49 H 0.04 0.50 6.46 -51.93 -0.34 0.16 16 50 H 0.07 0.76 8.02 -51.93 -0.42 0.34 16 51 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 378.39 15.07 5.70 5.70 Total: -1.00 -29.70 378.39 -10.90 -40.60 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -8.81 Total: 7.76 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -2.76 Total: -23.66 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.88 Total: -48.11 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.15 Total: 17.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.70 -10.90 -40.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.867 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds