Wall clock time and date at job start Tue Mar 31 2020 11:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47171 * 2 1 4 4 H 1.09000 * 109.46777 * 53.84660 * 3 2 1 5 5 C 1.50703 * 109.47100 * 173.84473 * 3 2 1 6 6 H 1.08001 * 119.99695 * 120.00414 * 5 3 2 7 7 C 1.37875 * 120.00088 * 300.00194 * 5 3 2 8 8 N 1.31508 * 120.00287 * 180.02562 * 7 5 3 9 9 Si 1.86808 * 119.99835 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47088 * 90.00199 * 9 7 5 11 11 H 1.48500 * 109.46673 * 209.99952 * 9 7 5 12 12 H 1.48496 * 109.47259 * 329.99907 * 9 7 5 13 13 N 1.46902 * 109.47341 * 293.84669 * 3 2 1 14 14 C 1.46899 * 111.00060 * 140.62912 * 13 3 2 15 15 C 1.52996 * 109.52246 * 54.64809 * 14 13 3 16 16 C 1.53119 * 109.52253 * 294.51753 * 14 13 3 17 17 C 1.53046 * 109.27152 * 182.50204 * 16 14 13 18 18 N 1.46849 * 109.57391 * 59.09151 * 17 16 14 19 19 C 1.46901 * 110.99615 * 174.18942 * 18 17 16 20 20 C 1.50696 * 109.47137 * 294.20677 * 19 18 17 21 21 C 1.38243 * 119.99876 * 269.73026 * 20 19 18 22 22 C 1.38230 * 119.99820 * 179.79217 * 21 20 19 23 23 C 1.38231 * 120.00113 * 0.43732 * 22 21 20 24 24 C 1.38232 * 120.00197 * 359.81503 * 23 22 21 25 25 C 1.38227 * 120.00206 * 90.00331 * 20 19 18 26 26 C 1.46842 * 111.19430 * 298.28338 * 18 17 16 27 27 C 1.53040 * 109.52290 * 61.74513 * 26 18 17 28 28 H 1.09001 * 109.46814 * 306.22064 * 1 2 3 29 29 H 1.08997 * 109.47159 * 66.21999 * 1 2 3 30 30 H 1.08998 * 109.47142 * 186.22763 * 1 2 3 31 31 H 1.09006 * 109.46720 * 240.00180 * 2 1 3 32 32 H 1.09000 * 109.47280 * 120.00143 * 2 1 3 33 33 H 0.96995 * 120.00562 * 179.97438 * 8 7 5 34 34 H 1.00898 * 110.99619 * 16.67245 * 13 3 2 35 35 H 1.09001 * 109.47236 * 57.44910 * 15 14 13 36 36 H 1.08993 * 109.47227 * 177.44866 * 15 14 13 37 37 H 1.09007 * 109.47326 * 297.44904 * 15 14 13 38 38 H 1.08997 * 109.50684 * 302.38342 * 16 14 13 39 39 H 1.09006 * 109.50163 * 62.50528 * 16 14 13 40 40 H 1.08996 * 109.41094 * 299.06710 * 17 16 14 41 41 H 1.09006 * 109.46010 * 179.13486 * 17 16 14 42 42 H 1.09000 * 109.47232 * 54.20990 * 19 18 17 43 43 H 1.09005 * 109.46874 * 174.20523 * 19 18 17 44 44 H 1.08004 * 119.99534 * 359.97438 * 21 20 19 45 45 H 1.08002 * 119.99642 * 180.27426 * 22 21 20 46 46 H 1.08007 * 120.00428 * 179.83879 * 23 22 21 47 47 H 1.08003 * 120.00457 * 179.97438 * 24 23 22 48 48 H 1.07999 * 120.00106 * 359.97438 * 25 20 19 49 49 H 1.08999 * 109.46680 * 301.72794 * 26 18 17 50 50 H 1.09005 * 109.45572 * 181.75306 * 26 18 17 51 51 H 1.09001 * 109.50037 * 180.87673 * 27 26 18 52 52 H 1.09002 * 109.53692 * 60.77968 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5895 1.9871 0.8298 5 6 3.5393 1.4452 0.1523 6 1 4.1593 1.8846 -0.6151 7 6 4.1196 0.8867 1.2714 8 7 5.4279 0.8895 1.4047 9 14 3.0472 0.1273 2.5992 10 1 2.8310 -1.3108 2.2986 11 1 3.7202 0.2621 3.9161 12 1 1.7380 0.8271 2.6385 13 7 1.6754 2.0909 -1.2668 14 6 1.2624 3.4832 -1.0458 15 6 2.3638 4.2293 -0.2901 16 6 -0.0297 3.5095 -0.2246 17 6 -0.4884 4.9592 -0.0510 18 7 -0.7114 5.5659 -1.3695 19 6 -1.2840 6.9125 -1.2393 20 6 -2.6654 6.8156 -0.6450 21 6 -3.7658 6.6848 -1.4715 22 6 -5.0325 6.5917 -0.9262 23 6 -5.1998 6.6384 0.4452 24 6 -4.1000 6.7744 1.2715 25 6 -2.8328 6.8633 0.7263 26 6 0.5277 5.5948 -2.1570 27 6 1.0160 4.1640 -2.3949 28 1 -0.3633 0.6073 0.8291 29 1 -0.3633 0.4144 -0.9404 30 1 -0.3633 -1.0216 0.1115 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 5.8361 0.4970 2.1921 34 1 0.9543 1.5712 -1.7444 35 1 3.2942 4.1732 -0.8552 36 1 2.0763 5.2733 -0.1663 37 1 2.5056 3.7729 0.6896 38 1 -0.8029 2.9438 -0.7445 39 1 0.1518 3.0646 0.7538 40 1 0.2788 5.5205 0.4822 41 1 -1.4166 4.9805 0.5202 42 1 -0.6501 7.5155 -0.5891 43 1 -1.3434 7.3787 -2.2228 44 1 -3.6354 6.6525 -2.5431 45 1 -5.8918 6.4850 -1.5717 46 1 -6.1898 6.5682 0.8712 47 1 -4.2307 6.8113 2.3429 48 1 -1.9735 6.9695 1.3718 49 1 1.2902 6.1532 -1.6141 50 1 0.3375 6.0777 -3.1156 51 1 1.9440 4.1865 -2.9661 52 1 0.2602 3.6085 -2.9502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165110.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:24 Heat of formation + Delta-G solvation = 14.730545 kcal Electronic energy + Delta-G solvation = -27888.160528 eV Core-core repulsion = 24465.431329 eV Total energy + Delta-G solvation = -3422.729199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13588 -39.96504 -38.01944 -35.51052 -34.05864 -32.64132 -31.95732 -31.55353 -30.66159 -29.10163 -28.45352 -26.12397 -24.45894 -24.26659 -23.36950 -22.96114 -21.77241 -21.39644 -19.33807 -18.76209 -17.64172 -17.55850 -16.74129 -16.32435 -16.28284 -16.00706 -15.80369 -15.52559 -15.22934 -15.00997 -14.83320 -14.52464 -14.24375 -14.14866 -13.73246 -13.59087 -13.54442 -13.39113 -13.04054 -12.99806 -12.82271 -12.62312 -12.59490 -12.41778 -12.28503 -12.11376 -11.99096 -11.83370 -11.68655 -11.58188 -11.50020 -11.40640 -11.04709 -10.94066 -10.62622 -9.75713 -9.66042 -9.18296 -8.86620 -8.21728 -6.19621 0.46842 0.55870 1.27455 1.32469 1.41686 2.33317 2.76220 3.11051 3.22409 3.45767 3.81373 3.91848 3.96278 4.01704 4.18117 4.20706 4.25592 4.29573 4.33180 4.34422 4.41619 4.43764 4.48503 4.53279 4.62720 4.67289 4.73236 4.75588 4.81532 4.83656 4.88836 4.96586 5.01463 5.05601 5.05893 5.12695 5.13572 5.16489 5.21596 5.23097 5.33858 5.43953 5.55059 5.61007 5.61718 5.67391 5.75507 5.78515 6.12470 6.13533 6.18564 6.21013 6.68646 6.87057 7.02279 7.43326 8.95875 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017541 B = 0.003488 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.883392 B = 8024.850430 C = 8526.359137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.144 4.144 3 C 0.198 3.802 4 H 0.008 0.992 5 C -0.476 4.476 6 H 0.033 0.967 7 C 0.005 3.995 8 N -0.955 5.955 9 Si 0.940 3.060 10 H -0.269 1.269 11 H -0.304 1.304 12 H -0.251 1.251 13 N -0.675 5.675 14 C 0.120 3.880 15 C -0.120 4.120 16 C -0.132 4.132 17 C 0.064 3.936 18 N -0.530 5.530 19 C 0.094 3.906 20 C -0.085 4.085 21 C -0.109 4.109 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.132 4.132 25 C -0.129 4.129 26 C 0.061 3.939 27 C -0.092 4.092 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.261 0.739 34 H 0.333 0.667 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.048 0.952 40 H 0.028 0.972 41 H 0.077 0.923 42 H 0.041 0.959 43 H 0.097 0.903 44 H 0.132 0.868 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.133 0.867 48 H 0.118 0.882 49 H 0.033 0.967 50 H 0.095 0.905 51 H 0.066 0.934 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.648 12.910 -4.861 26.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.182 4.182 3 C 0.089 3.911 4 H 0.025 0.975 5 C -0.515 4.515 6 H 0.052 0.948 7 C -0.190 4.190 8 N -0.597 5.597 9 Si 0.768 3.232 10 H -0.196 1.196 11 H -0.232 1.232 12 H -0.175 1.175 13 N -0.305 5.305 14 C 0.029 3.971 15 C -0.177 4.177 16 C -0.172 4.172 17 C -0.064 4.064 18 N -0.255 5.255 19 C -0.033 4.033 20 C -0.085 4.085 21 C -0.128 4.128 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.150 4.150 25 C -0.147 4.147 26 C -0.067 4.067 27 C -0.130 4.130 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.153 0.847 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.095 0.905 42 H 0.059 0.941 43 H 0.116 0.884 44 H 0.150 0.850 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.151 0.849 48 H 0.136 0.864 49 H 0.051 0.949 50 H 0.113 0.887 51 H 0.084 0.916 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.172 12.727 -5.189 26.086 hybrid contribution 0.343 -0.360 1.873 1.938 sum -21.829 12.367 -3.316 25.307 Atomic orbital electron populations 1.21832 0.94560 1.02090 1.01851 1.22164 0.96198 0.99116 1.00723 1.19386 0.93348 0.90135 0.88208 0.97472 1.21330 0.91816 1.34726 1.03656 0.94848 1.25734 0.95736 0.97182 1.00375 1.70044 1.11249 1.48472 1.29958 0.85992 0.79678 0.79559 0.77951 1.19553 1.23196 1.17462 1.60564 1.44727 1.01998 1.23261 1.20906 0.91965 0.89142 0.95085 1.21761 0.97899 0.98476 0.99592 1.22251 0.97852 0.96977 1.00127 1.22024 0.99701 0.94265 0.90446 1.61966 1.27634 1.20137 1.15765 1.21071 0.91537 0.89328 1.01387 1.19839 0.95199 0.99981 0.93524 1.21228 0.92170 0.98999 1.00357 1.21447 0.97704 0.99857 0.95645 1.21444 0.99488 0.99872 0.93967 1.21373 0.92630 1.00287 1.00709 1.21229 0.97791 1.00851 0.94847 1.22130 0.89684 0.96466 0.98401 1.21477 1.00868 0.95216 0.95456 0.93558 0.91346 0.91594 0.91972 0.94552 0.93021 0.84746 0.94548 0.92145 0.94739 0.91266 0.93288 0.95397 0.90504 0.94123 0.88423 0.85010 0.84257 0.84380 0.84937 0.86446 0.94921 0.88680 0.91582 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.56 9.70 71.98 0.70 -3.87 16 2 C -0.14 -5.90 4.88 30.60 0.15 -5.75 16 3 C 0.20 8.97 0.80 44.17 0.04 9.00 16 4 H 0.01 0.37 4.12 -2.39 -0.01 0.36 16 5 C -0.48 -27.14 7.97 25.60 0.20 -26.94 16 6 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 7 C 0.01 0.31 5.45 84.66 0.46 0.77 16 8 N -0.96 -60.94 13.96 21.45 0.30 -60.64 16 9 Si 0.94 45.82 24.42 68.60 1.68 47.49 16 10 H -0.27 -12.55 6.82 99.48 0.68 -11.87 16 11 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 12 H -0.25 -11.33 6.53 99.48 0.65 -10.68 16 13 N -0.67 -26.28 5.94 -451.71 -2.68 -28.97 16 14 C 0.12 4.02 0.69 3.60 0.00 4.03 16 15 C -0.12 -4.60 6.96 71.98 0.50 -4.10 16 16 C -0.13 -4.00 4.77 30.65 0.15 -3.86 16 17 C 0.06 1.66 4.91 86.33 0.42 2.08 16 18 N -0.53 -11.90 4.65 -900.90 -4.19 -16.09 16 19 C 0.09 1.75 5.12 85.56 0.44 2.19 16 20 C -0.08 -1.64 4.89 -19.87 -0.10 -1.73 16 21 C -0.11 -1.91 9.70 22.27 0.22 -1.70 16 22 C -0.13 -2.03 10.05 22.27 0.22 -1.80 16 23 C -0.13 -2.04 10.05 22.27 0.22 -1.81 16 24 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 25 C -0.13 -2.49 7.88 22.27 0.18 -2.32 16 26 C 0.06 1.38 5.21 86.33 0.45 1.83 16 27 C -0.09 -2.52 5.19 30.65 0.16 -2.36 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.87 6.82 -2.39 -0.02 1.86 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 2.56 8.14 -2.38 -0.02 2.54 16 32 H 0.04 1.61 3.22 -2.39 -0.01 1.60 16 33 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.33 11.47 6.68 -89.70 -0.60 10.87 16 35 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.97 4.93 -2.39 -0.01 1.96 16 37 H 0.03 1.53 6.23 -2.38 -0.01 1.51 16 38 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.05 1.68 6.41 -2.38 -0.02 1.66 16 40 H 0.03 0.76 6.57 -2.39 -0.02 0.75 16 41 H 0.08 1.93 5.75 -2.38 -0.01 1.92 16 42 H 0.04 0.77 8.07 -2.39 -0.02 0.75 16 43 H 0.10 1.51 7.93 -2.38 -0.02 1.49 16 44 H 0.13 1.95 8.06 -2.91 -0.02 1.93 16 45 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 47 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 48 H 0.12 2.20 7.95 -2.91 -0.02 2.17 16 49 H 0.03 0.78 6.46 -2.39 -0.02 0.77 16 50 H 0.09 1.73 8.02 -2.38 -0.02 1.71 16 51 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 52 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -67.06 378.39 -0.05 -67.11 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.21 Total: 29.49 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 4.63 Total: -38.40 kcal Atomic # 7 Polarization: -99.12 SS G_CDS: -6.57 Total: -105.70 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.68 Total: 47.49 kcal Total: -67.06 -0.05 -67.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165110.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.844 kcal (2) G-P(sol) polarization free energy of solvation -67.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds