Wall clock time and date at job start Tue Mar 31 2020 11:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47121 * 2 1 4 4 H 1.08993 * 109.47290 * 304.21807 * 3 2 1 5 5 C 1.50706 * 109.46938 * 184.21935 * 3 2 1 6 6 H 1.07995 * 119.99772 * 239.06471 * 5 3 2 7 7 C 1.37878 * 119.99791 * 59.06653 * 5 3 2 8 8 N 1.31507 * 120.00319 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99519 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47578 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46757 * 120.00411 * 9 7 5 12 12 H 1.48496 * 109.47281 * 239.99903 * 9 7 5 13 13 N 1.46900 * 109.46815 * 64.22124 * 3 2 1 14 14 C 1.46901 * 110.99960 * 270.45729 * 13 3 2 15 15 C 1.53004 * 109.46622 * 287.97533 * 14 13 3 16 16 C 1.46897 * 111.00049 * 34.41281 * 13 3 2 17 17 H 1.08993 * 110.28913 * 309.94380 * 16 13 3 18 18 C 1.54259 * 110.32602 * 72.07599 * 16 13 3 19 19 C 1.54375 * 105.06470 * 118.99639 * 18 16 13 20 20 N 1.48567 * 104.59322 * 23.85069 * 19 18 16 21 21 C 1.46898 * 110.99843 * 200.95962 * 20 19 18 22 22 C 1.50700 * 109.47322 * 290.12678 * 21 20 19 23 23 C 1.38237 * 119.99985 * 269.72856 * 22 21 20 24 24 C 1.38231 * 119.99574 * 179.76653 * 23 22 21 25 25 C 1.38236 * 120.00635 * 0.50567 * 24 23 22 26 26 C 1.38239 * 119.99681 * 359.74865 * 25 24 23 27 27 C 1.38236 * 119.99802 * 359.97438 * 26 25 24 28 28 C 1.48560 * 104.22023 * 320.51898 * 20 19 18 29 29 H 1.09010 * 109.47160 * 51.04862 * 1 2 3 30 30 H 1.08997 * 109.47243 * 171.04248 * 1 2 3 31 31 H 1.08998 * 109.47255 * 291.04622 * 1 2 3 32 32 H 1.09007 * 109.47341 * 239.99854 * 2 1 3 33 33 H 1.09001 * 109.47215 * 120.00374 * 2 1 3 34 34 H 0.97004 * 119.99960 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47015 * 47.97588 * 14 13 3 36 36 H 1.08994 * 109.47290 * 167.98050 * 14 13 3 37 37 H 1.08997 * 109.47050 * 66.25440 * 15 14 13 38 38 H 1.09010 * 109.46662 * 186.24385 * 15 14 13 39 39 H 1.09000 * 109.47582 * 306.24657 * 15 14 13 40 40 H 1.09004 * 110.32201 * 237.89664 * 18 16 13 41 41 H 1.08999 * 110.32368 * 0.09612 * 18 16 13 42 42 H 1.08999 * 110.41301 * 142.63194 * 19 18 16 43 43 H 1.09001 * 110.41023 * 265.07524 * 19 18 16 44 44 H 1.09003 * 109.46929 * 50.12902 * 21 20 19 45 45 H 1.08998 * 109.47372 * 170.12639 * 21 20 19 46 46 H 1.07994 * 120.00055 * 359.97438 * 23 22 21 47 47 H 1.08005 * 119.99635 * 180.23108 * 24 23 22 48 48 H 1.07991 * 120.00617 * 179.72711 * 25 24 23 49 49 H 1.07991 * 120.00483 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.99959 * 179.97438 * 27 26 25 51 51 H 1.09002 * 110.40822 * 280.70108 * 28 20 19 52 52 H 1.09001 * 110.40997 * 158.26572 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6163 1.9777 -0.8497 5 6 3.5434 1.4438 -0.1045 6 1 4.1381 1.9052 0.6699 7 6 4.1595 0.8558 -1.1889 8 7 3.4353 0.2935 -2.1316 9 14 6.0230 0.8580 -1.3187 10 1 6.6007 1.5483 -0.1377 11 1 6.5175 -0.5415 -1.3645 12 1 6.4320 1.5683 -2.5570 13 7 1.6353 2.1049 1.2472 14 6 0.3210 2.7447 1.1010 15 6 0.4528 3.9829 0.2118 16 6 1.6381 1.1586 2.3707 17 1 1.0842 0.2576 2.1074 18 6 3.0855 0.8013 2.7668 19 6 3.2286 1.2712 4.2303 20 7 1.8391 1.2870 4.7560 21 6 1.7319 2.1579 5.9341 22 6 2.4588 1.5266 7.0934 23 6 1.7850 0.6789 7.9527 24 6 2.4531 0.0961 9.0133 25 6 3.7922 0.3690 9.2208 26 6 4.4647 1.2209 8.3645 27 6 3.7981 1.7993 7.3006 28 6 1.0284 1.8143 3.6283 29 1 -0.3634 0.6461 -0.7993 30 1 -0.3633 -1.0151 -0.1600 31 1 -0.3634 0.3690 0.9591 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8688 -0.1198 -2.8947 35 1 -0.3763 2.0422 0.6447 36 1 -0.0505 3.0400 2.0822 37 1 0.7171 3.6768 -0.8003 38 1 -0.4961 4.5192 0.1930 39 1 1.2308 4.6346 0.6093 40 1 3.2422 -0.2752 2.6977 41 1 3.7939 1.3295 2.1286 42 1 3.8413 0.5698 4.7966 43 1 3.6607 2.2712 4.2680 44 1 2.1768 3.1276 5.7107 45 1 0.6815 2.2912 6.1930 46 1 0.7376 0.4694 7.7935 47 1 1.9276 -0.5692 9.6825 48 1 4.3130 -0.0828 10.0519 49 1 5.5108 1.4345 8.5268 50 1 4.3233 2.4651 6.6318 51 1 1.1161 2.8993 3.5719 52 1 -0.0156 1.5219 3.7414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174669.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:28 Heat of formation + Delta-G solvation = 52.663875 kcal Electronic energy + Delta-G solvation = -27866.549933 eV Core-core repulsion = 24445.465647 eV Total energy + Delta-G solvation = -3421.084286 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.75203 -38.90282 -36.72021 -33.09875 -32.65669 -31.22463 -30.93918 -30.09176 -28.79685 -28.09022 -25.98178 -24.97826 -23.23738 -22.61140 -21.66450 -21.06678 -20.45174 -20.11369 -18.29594 -16.82833 -16.66196 -15.94304 -15.51405 -15.15776 -15.10772 -14.81833 -14.23029 -13.84170 -13.68375 -13.42485 -13.40095 -13.18263 -12.80042 -12.62242 -12.46781 -12.24884 -11.89351 -11.77995 -11.37910 -11.33479 -11.22993 -11.02125 -10.93289 -10.88056 -10.79429 -10.77496 -10.57657 -10.47033 -10.28368 -9.98394 -9.90845 -9.51306 -9.37376 -8.94714 -8.82766 -8.73455 -8.27940 -8.19562 -6.99908 -5.96787 -3.99140 1.30605 1.37506 3.31196 3.39886 3.43316 3.69462 4.35528 4.45481 4.73295 4.82183 4.95209 5.05666 5.06839 5.17163 5.27593 5.33111 5.43124 5.46544 5.62184 5.68234 5.72264 5.77249 5.80268 5.96842 5.99300 6.00846 6.01208 6.08604 6.13177 6.16932 6.23975 6.36947 6.41060 6.44510 6.44786 6.45998 6.56603 6.60537 6.64487 6.78871 6.82714 6.90976 6.95924 7.02386 7.05051 7.20197 7.25229 7.33591 7.52229 7.80744 7.94909 8.30535 8.46058 8.63794 9.06366 9.64688 11.08953 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013988 B = 0.003744 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.191881 B = 7475.976109 C = 8609.518474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.155 4.155 3 C 0.217 3.783 4 H 0.037 0.963 5 C -0.488 4.488 6 H 0.067 0.933 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.523 5.523 14 C 0.033 3.967 15 C -0.141 4.141 16 C 0.084 3.916 17 H 0.060 0.940 18 C -0.119 4.119 19 C 0.037 3.963 20 N -0.506 5.506 21 C 0.081 3.919 22 C -0.068 4.068 23 C -0.101 4.101 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.112 4.112 28 C 0.035 3.965 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.258 0.742 35 H 0.039 0.961 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.070 0.930 43 H 0.039 0.961 44 H 0.044 0.956 45 H 0.078 0.922 46 H 0.121 0.879 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.052 0.948 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 2.279 17.034 17.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.194 4.194 3 C 0.111 3.889 4 H 0.055 0.945 5 C -0.527 4.527 6 H 0.085 0.915 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.248 5.248 14 C -0.095 4.095 15 C -0.199 4.199 16 C -0.025 4.025 17 H 0.077 0.923 18 C -0.157 4.157 19 C -0.091 4.091 20 N -0.230 5.230 21 C -0.047 4.047 22 C -0.069 4.069 23 C -0.120 4.120 24 C -0.142 4.142 25 C -0.144 4.144 26 C -0.140 4.140 27 C -0.130 4.130 28 C -0.093 4.093 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.128 0.872 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.096 0.904 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.070 0.930 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.797 2.043 17.125 17.660 hybrid contribution 0.659 0.035 -0.557 0.864 sum -3.138 2.078 16.568 16.990 Atomic orbital electron populations 1.22104 0.99773 0.99408 0.99641 1.22269 0.91401 1.02410 1.03333 1.19345 0.95327 0.88614 0.85594 0.94502 1.21284 0.90927 1.34778 1.05664 0.91471 1.24927 0.97864 0.95755 0.95867 1.69869 1.34585 1.38444 1.10532 0.86568 0.86161 0.77518 0.77934 1.19771 1.21279 1.21269 1.62568 1.24413 1.31699 1.06148 1.22332 0.92271 0.96296 0.98632 1.21729 0.99949 0.97591 1.00610 1.22299 0.96136 0.94601 0.89438 0.92251 1.22624 0.98283 1.01208 0.93611 1.23174 0.89685 0.99550 0.96688 1.65424 1.08014 1.45960 1.03554 1.21189 0.99806 0.93892 0.89792 1.19772 0.93984 0.97423 0.95714 1.21016 1.00068 0.96404 0.94495 1.21121 0.94822 1.00079 0.98146 1.21108 0.94829 0.98836 0.99649 1.21106 0.99749 0.97750 0.95384 1.21104 0.94124 1.00167 0.97637 1.23300 0.97098 0.98137 0.90755 0.93719 0.94895 0.94121 0.88283 0.93671 0.93206 0.94301 0.92666 0.92403 0.94005 0.92495 0.92251 0.87161 0.91162 0.94255 0.93832 0.90355 0.86125 0.86330 0.86451 0.86295 0.86303 0.93023 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.02 37.15 0.30 -2.66 16 2 C -0.15 -3.53 4.68 -26.73 -0.13 -3.65 16 3 C 0.22 5.08 1.74 -68.86 -0.12 4.96 16 4 H 0.04 0.96 6.27 -51.93 -0.33 0.64 16 5 C -0.49 -12.57 7.38 -34.44 -0.25 -12.83 16 6 H 0.07 1.75 5.75 -52.49 -0.30 1.45 16 7 C 0.06 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.89 -24.68 11.22 55.43 0.62 -24.06 16 9 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.52 -10.44 4.15 -218.46 -0.91 -11.35 16 14 C 0.03 0.58 4.94 -3.82 -0.02 0.56 16 15 C -0.14 -2.38 9.89 37.16 0.37 -2.01 16 16 C 0.08 1.55 1.90 -66.33 -0.13 1.42 16 17 H 0.06 1.17 4.27 -51.93 -0.22 0.95 16 18 C -0.12 -2.24 5.60 -25.35 -0.14 -2.38 16 19 C 0.04 0.59 5.47 -2.18 -0.01 0.57 16 20 N -0.51 -7.55 5.36 -231.41 -1.24 -8.79 16 21 C 0.08 1.03 4.97 -4.98 -0.02 1.00 16 22 C -0.07 -0.84 5.10 -104.62 -0.53 -1.37 16 23 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 24 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 25 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 26 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 27 C -0.11 -1.32 8.73 -39.58 -0.35 -1.66 16 28 C 0.03 0.54 4.57 -2.18 -0.01 0.53 16 29 H 0.04 0.87 7.72 -51.92 -0.40 0.47 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.04 0.73 4.97 -51.93 -0.26 0.47 16 32 H 0.10 2.58 5.89 -51.93 -0.31 2.27 16 33 H 0.04 1.03 5.39 -51.93 -0.28 0.75 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.04 0.69 4.49 -51.93 -0.23 0.46 16 36 H 0.05 0.87 5.77 -51.93 -0.30 0.57 16 37 H 0.06 1.08 6.76 -51.93 -0.35 0.73 16 38 H 0.04 0.59 8.14 -51.92 -0.42 0.16 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.06 1.15 7.92 -51.93 -0.41 0.74 16 41 H 0.11 2.36 4.64 -51.93 -0.24 2.12 16 42 H 0.07 1.10 7.81 -51.93 -0.41 0.69 16 43 H 0.04 0.62 7.82 -51.93 -0.41 0.21 16 44 H 0.04 0.55 7.83 -51.93 -0.41 0.14 16 45 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 46 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 47 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 48 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 50 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 51 H 0.05 0.82 6.99 -51.93 -0.36 0.45 16 52 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 379.25 15.07 5.72 5.72 Total: -1.00 -26.86 379.25 -12.12 -38.98 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.57 Total: 6.30 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -2.72 Total: -22.67 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: -1.52 Total: -44.20 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -26.86 -12.12 -38.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174669.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.641 kcal (2) G-P(sol) polarization free energy of solvation -26.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds