Wall clock time and date at job start Tue Mar 31 2020 11:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47121 * 2 1 4 4 H 1.08993 * 109.47290 * 304.21807 * 3 2 1 5 5 C 1.50706 * 109.46938 * 184.21935 * 3 2 1 6 6 H 1.07995 * 119.99772 * 239.06471 * 5 3 2 7 7 C 1.37878 * 119.99791 * 59.06653 * 5 3 2 8 8 N 1.31507 * 120.00319 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99519 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47578 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46757 * 120.00411 * 9 7 5 12 12 H 1.48496 * 109.47281 * 239.99903 * 9 7 5 13 13 N 1.46900 * 109.46815 * 64.22124 * 3 2 1 14 14 C 1.46901 * 110.99960 * 270.45729 * 13 3 2 15 15 C 1.53004 * 109.46622 * 287.97533 * 14 13 3 16 16 C 1.46897 * 111.00049 * 34.41281 * 13 3 2 17 17 H 1.08993 * 110.28913 * 309.94380 * 16 13 3 18 18 C 1.54259 * 110.32602 * 72.07599 * 16 13 3 19 19 C 1.54375 * 105.06470 * 118.99639 * 18 16 13 20 20 N 1.48567 * 104.59322 * 23.85069 * 19 18 16 21 21 C 1.46898 * 110.99843 * 200.95962 * 20 19 18 22 22 C 1.50700 * 109.47322 * 290.12678 * 21 20 19 23 23 C 1.38237 * 119.99985 * 269.72856 * 22 21 20 24 24 C 1.38231 * 119.99574 * 179.76653 * 23 22 21 25 25 C 1.38236 * 120.00635 * 0.50567 * 24 23 22 26 26 C 1.38239 * 119.99681 * 359.74865 * 25 24 23 27 27 C 1.38236 * 119.99802 * 359.97438 * 26 25 24 28 28 C 1.48560 * 104.22023 * 320.51898 * 20 19 18 29 29 H 1.09010 * 109.47160 * 51.04862 * 1 2 3 30 30 H 1.08997 * 109.47243 * 171.04248 * 1 2 3 31 31 H 1.08998 * 109.47255 * 291.04622 * 1 2 3 32 32 H 1.09007 * 109.47341 * 239.99854 * 2 1 3 33 33 H 1.09001 * 109.47215 * 120.00374 * 2 1 3 34 34 H 0.97004 * 119.99960 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47015 * 47.97588 * 14 13 3 36 36 H 1.08994 * 109.47290 * 167.98050 * 14 13 3 37 37 H 1.08997 * 109.47050 * 66.25440 * 15 14 13 38 38 H 1.09010 * 109.46662 * 186.24385 * 15 14 13 39 39 H 1.09000 * 109.47582 * 306.24657 * 15 14 13 40 40 H 1.09004 * 110.32201 * 237.89664 * 18 16 13 41 41 H 1.08999 * 110.32368 * 0.09612 * 18 16 13 42 42 H 1.08999 * 110.41301 * 142.63194 * 19 18 16 43 43 H 1.09001 * 110.41023 * 265.07524 * 19 18 16 44 44 H 1.09003 * 109.46929 * 50.12902 * 21 20 19 45 45 H 1.08998 * 109.47372 * 170.12639 * 21 20 19 46 46 H 1.07994 * 120.00055 * 359.97438 * 23 22 21 47 47 H 1.08005 * 119.99635 * 180.23108 * 24 23 22 48 48 H 1.07991 * 120.00617 * 179.72711 * 25 24 23 49 49 H 1.07991 * 120.00483 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.99959 * 179.97438 * 27 26 25 51 51 H 1.09002 * 110.40822 * 280.70108 * 28 20 19 52 52 H 1.09001 * 110.40997 * 158.26572 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6163 1.9777 -0.8497 5 6 3.5434 1.4438 -0.1045 6 1 4.1381 1.9052 0.6699 7 6 4.1595 0.8558 -1.1889 8 7 3.4353 0.2935 -2.1316 9 14 6.0230 0.8580 -1.3187 10 1 6.6007 1.5483 -0.1377 11 1 6.5175 -0.5415 -1.3645 12 1 6.4320 1.5683 -2.5570 13 7 1.6353 2.1049 1.2472 14 6 0.3210 2.7447 1.1010 15 6 0.4528 3.9829 0.2118 16 6 1.6381 1.1586 2.3707 17 1 1.0842 0.2576 2.1074 18 6 3.0855 0.8013 2.7668 19 6 3.2286 1.2712 4.2303 20 7 1.8391 1.2870 4.7560 21 6 1.7319 2.1579 5.9341 22 6 2.4588 1.5266 7.0934 23 6 1.7850 0.6789 7.9527 24 6 2.4531 0.0961 9.0133 25 6 3.7922 0.3690 9.2208 26 6 4.4647 1.2209 8.3645 27 6 3.7981 1.7993 7.3006 28 6 1.0284 1.8143 3.6283 29 1 -0.3634 0.6461 -0.7993 30 1 -0.3633 -1.0151 -0.1600 31 1 -0.3634 0.3690 0.9591 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8688 -0.1198 -2.8947 35 1 -0.3763 2.0422 0.6447 36 1 -0.0505 3.0400 2.0822 37 1 0.7171 3.6768 -0.8003 38 1 -0.4961 4.5192 0.1930 39 1 1.2308 4.6346 0.6093 40 1 3.2422 -0.2752 2.6977 41 1 3.7939 1.3295 2.1286 42 1 3.8413 0.5698 4.7966 43 1 3.6607 2.2712 4.2680 44 1 2.1768 3.1276 5.7107 45 1 0.6815 2.2912 6.1930 46 1 0.7376 0.4694 7.7935 47 1 1.9276 -0.5692 9.6825 48 1 4.3130 -0.0828 10.0519 49 1 5.5108 1.4345 8.5268 50 1 4.3233 2.4651 6.6318 51 1 1.1161 2.8993 3.5719 52 1 -0.0156 1.5219 3.7414 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174669.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:27 Heat of formation + Delta-G solvation = 38.536248 kcal Electronic energy + Delta-G solvation = -27867.162553 eV Core-core repulsion = 24445.465647 eV Total energy + Delta-G solvation = -3421.696906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.99926 -39.99395 -38.07881 -34.90972 -33.80078 -32.95965 -31.73556 -31.33804 -30.16503 -29.70178 -27.56074 -26.12110 -25.01952 -23.44254 -22.93271 -22.21124 -22.09444 -21.35066 -19.87800 -18.61503 -17.58856 -17.37232 -16.74985 -16.68595 -16.17129 -16.02764 -15.77477 -15.32324 -15.00611 -14.73862 -14.45243 -14.30309 -14.22088 -14.02388 -13.64043 -13.47250 -13.26159 -13.19086 -13.06155 -12.82274 -12.65162 -12.57499 -12.54577 -12.26138 -12.23922 -12.06975 -11.93115 -11.78520 -11.74918 -11.55071 -11.47583 -11.31261 -11.05395 -10.64003 -10.29855 -9.76126 -9.69291 -9.34107 -8.62605 -8.00796 -6.08244 0.48061 0.56776 1.40860 1.44551 1.54050 2.46854 2.80411 3.20681 3.27547 3.58505 3.76430 3.85014 4.00461 4.13755 4.21089 4.28378 4.34165 4.35194 4.43263 4.44817 4.50273 4.55310 4.59639 4.64554 4.67383 4.72000 4.73812 4.76960 4.82331 4.88190 4.98522 5.04759 5.10855 5.15660 5.17968 5.18912 5.22224 5.29906 5.31359 5.42296 5.48280 5.56218 5.62008 5.67277 5.67762 5.74615 5.85160 5.95550 5.98436 6.09659 6.19370 6.43808 6.70640 6.88118 7.05297 7.58994 9.03335 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013988 B = 0.003744 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.191881 B = 7475.976109 C = 8609.518474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.147 4.147 3 C 0.227 3.773 4 H 0.007 0.993 5 C -0.492 4.492 6 H 0.061 0.939 7 C 0.011 3.989 8 N -0.921 5.921 9 Si 0.944 3.056 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.530 5.530 14 C 0.031 3.969 15 C -0.136 4.136 16 C 0.085 3.915 17 H 0.048 0.952 18 C -0.120 4.120 19 C 0.051 3.949 20 N -0.508 5.508 21 C 0.085 3.915 22 C -0.085 4.085 23 C -0.112 4.112 24 C -0.129 4.129 25 C -0.129 4.129 26 C -0.130 4.130 27 C -0.127 4.127 28 C 0.046 3.954 29 H 0.039 0.961 30 H 0.045 0.955 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.256 0.744 35 H 0.038 0.962 36 H 0.082 0.918 37 H 0.029 0.971 38 H 0.073 0.927 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.043 0.957 45 H 0.093 0.907 46 H 0.130 0.870 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.135 0.865 50 H 0.117 0.883 51 H 0.054 0.946 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.763 2.581 19.588 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.186 4.186 3 C 0.120 3.880 4 H 0.024 0.976 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.187 4.187 8 N -0.562 5.562 9 Si 0.771 3.229 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.255 5.255 14 C -0.097 4.097 15 C -0.193 4.193 16 C -0.024 4.024 17 H 0.066 0.934 18 C -0.158 4.158 19 C -0.077 4.077 20 N -0.232 5.232 21 C -0.043 4.043 22 C -0.085 4.085 23 C -0.131 4.131 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.148 4.148 27 C -0.145 4.145 28 C -0.082 4.082 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.112 0.888 46 H 0.147 0.853 47 H 0.158 0.842 48 H 0.159 0.841 49 H 0.153 0.847 50 H 0.135 0.865 51 H 0.072 0.928 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.588 2.357 19.698 20.363 hybrid contribution 0.908 -0.057 -1.280 1.571 sum -3.680 2.301 18.418 18.923 Atomic orbital electron populations 1.21960 0.97022 1.00285 1.00449 1.22071 0.93832 1.01450 1.01257 1.19025 0.93908 0.88792 0.86266 0.97565 1.21580 0.92497 1.33878 1.05154 0.92122 1.25570 1.01370 0.95881 0.95872 1.70004 1.35818 1.39416 1.10965 0.85717 0.82074 0.77311 0.77797 1.19258 1.21253 1.21256 1.62470 1.26328 1.31639 1.05028 1.22437 0.90856 0.96190 1.00196 1.21684 1.01437 0.97501 0.98705 1.22286 0.95826 0.94174 0.90162 0.93420 1.22494 0.98101 0.99922 0.95257 1.22972 0.90677 0.99429 0.94645 1.65424 1.06893 1.46904 1.03937 1.21215 1.00900 0.93365 0.88822 1.19810 0.94298 0.98370 0.96062 1.21222 1.00679 0.96396 0.94780 1.21444 0.95130 0.99998 0.98063 1.21456 0.94969 0.98283 0.99997 1.21381 1.00690 0.97648 0.95109 1.21227 0.94288 1.00710 0.98322 1.23190 0.97781 0.97881 0.89343 0.94178 0.93605 0.92295 0.91779 0.94168 0.93478 0.94366 0.89991 0.95188 0.90782 0.93090 0.93662 0.90025 0.90949 0.94168 0.93856 0.88829 0.85253 0.84150 0.84129 0.84697 0.86493 0.92823 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 8.02 71.98 0.58 -4.80 16 2 C -0.15 -6.83 4.68 30.59 0.14 -6.69 16 3 C 0.23 10.91 1.74 44.17 0.08 10.99 16 4 H 0.01 0.35 6.27 -2.39 -0.01 0.34 16 5 C -0.49 -26.15 7.38 25.60 0.19 -25.96 16 6 H 0.06 3.26 5.75 -2.91 -0.02 3.24 16 7 C 0.01 0.58 5.29 84.66 0.45 1.02 16 8 N -0.92 -52.54 11.22 21.45 0.24 -52.30 16 9 Si 0.94 43.89 29.54 68.60 2.03 45.92 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 13 N -0.53 -21.07 4.15 -845.08 -3.50 -24.58 16 14 C 0.03 1.03 4.94 86.30 0.43 1.46 16 15 C -0.14 -4.44 9.89 71.98 0.71 -3.72 16 16 C 0.08 3.05 1.90 45.81 0.09 3.13 16 17 H 0.05 1.85 4.27 -2.39 -0.01 1.84 16 18 C -0.12 -4.54 5.60 31.49 0.18 -4.36 16 19 C 0.05 1.58 5.47 86.45 0.47 2.05 16 20 N -0.51 -14.22 5.36 -886.04 -4.75 -18.97 16 21 C 0.08 1.95 4.97 85.56 0.42 2.38 16 22 C -0.08 -1.93 5.10 -19.86 -0.10 -2.03 16 23 C -0.11 -2.31 9.70 22.27 0.22 -2.10 16 24 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 25 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 26 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 27 C -0.13 -2.82 8.73 22.27 0.19 -2.62 16 28 C 0.05 1.33 4.57 86.45 0.39 1.72 16 29 H 0.04 1.55 7.72 -2.38 -0.02 1.53 16 30 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 2.03 4.97 -2.39 -0.01 2.02 16 32 H 0.06 3.46 5.89 -2.38 -0.01 3.45 16 33 H 0.04 1.87 5.39 -2.39 -0.01 1.86 16 34 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 35 H 0.04 1.30 4.49 -2.39 -0.01 1.29 16 36 H 0.08 2.32 5.77 -2.39 -0.01 2.30 16 37 H 0.03 1.13 6.76 -2.39 -0.02 1.11 16 38 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.04 1.79 7.92 -2.39 -0.02 1.78 16 41 H 0.08 3.59 4.64 -2.39 -0.01 3.58 16 42 H 0.07 2.22 7.81 -2.39 -0.02 2.20 16 43 H 0.04 1.24 7.82 -2.39 -0.02 1.22 16 44 H 0.04 1.01 7.83 -2.39 -0.02 0.99 16 45 H 0.09 1.87 8.07 -2.39 -0.02 1.85 16 46 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 47 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 48 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 49 H 0.14 2.07 8.06 -2.92 -0.02 2.04 16 50 H 0.12 2.54 8.06 -2.91 -0.02 2.51 16 51 H 0.05 1.55 6.99 -2.39 -0.02 1.53 16 52 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -59.14 379.25 0.02 -59.12 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.89 Total: 26.76 kcal Atomic # 6 Polarization: -41.06 SS G_CDS: 5.11 Total: -35.95 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -8.01 Total: -95.85 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -59.14 0.02 -59.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174669.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.656 kcal (2) G-P(sol) polarization free energy of solvation -59.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds