Wall clock time and date at job start Tue Mar 31 2020 11:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47374 * 2 1 4 4 H 1.09004 * 109.46763 * 303.53473 * 3 2 1 5 5 C 1.50694 * 109.47300 * 183.52744 * 3 2 1 6 6 H 1.08001 * 120.00100 * 245.74308 * 5 3 2 7 7 C 1.37875 * 119.99508 * 66.02303 * 5 3 2 8 8 N 1.31522 * 119.99880 * 190.67577 * 7 5 3 9 9 Si 1.86799 * 120.00572 * 10.67824 * 7 5 3 10 10 H 1.48502 * 109.47275 * 94.89229 * 9 7 5 11 11 H 1.48491 * 109.47245 * 214.89278 * 9 7 5 12 12 H 1.48500 * 109.46857 * 334.89383 * 9 7 5 13 13 N 1.46903 * 109.47090 * 63.52515 * 3 2 1 14 14 C 1.46904 * 110.99765 * 39.21180 * 13 3 2 15 15 C 1.53001 * 109.47098 * 66.95921 * 14 13 3 16 16 C 1.46892 * 111.00245 * 275.25743 * 13 3 2 17 17 H 1.09005 * 110.64630 * 64.37843 * 16 13 3 18 18 C 1.54595 * 110.72526 * 301.22604 * 16 13 3 19 19 C 1.54002 * 105.14164 * 219.68336 * 18 16 13 20 20 N 1.47902 * 107.05487 * 358.77725 * 19 18 16 21 21 C 1.46897 * 111.00030 * 145.84713 * 20 19 18 22 22 C 1.50701 * 109.47502 * 69.86610 * 21 20 19 23 23 C 1.38234 * 120.00048 * 269.73093 * 22 21 20 24 24 C 1.38233 * 119.99676 * 179.76580 * 23 22 21 25 25 C 1.38241 * 120.00106 * 0.48439 * 24 23 22 26 26 C 1.38234 * 119.99978 * 359.79156 * 25 24 23 27 27 C 1.38235 * 119.99629 * 90.00326 * 22 21 20 28 28 C 1.48531 * 105.82563 * 25.32615 * 20 19 18 29 29 H 1.09004 * 109.47312 * 165.72790 * 1 2 3 30 30 H 1.09007 * 109.47578 * 285.72451 * 1 2 3 31 31 H 1.08996 * 109.46989 * 45.72311 * 1 2 3 32 32 H 1.08996 * 109.47468 * 239.99435 * 2 1 3 33 33 H 1.09012 * 109.46698 * 119.99444 * 2 1 3 34 34 H 0.97000 * 120.00350 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46693 * 186.95718 * 14 13 3 36 36 H 1.08996 * 109.47425 * 306.95380 * 14 13 3 37 37 H 1.08998 * 109.47222 * 173.21586 * 15 14 13 38 38 H 1.08996 * 109.47128 * 293.21715 * 15 14 13 39 39 H 1.08998 * 109.47033 * 53.21333 * 15 14 13 40 40 H 1.09001 * 110.31123 * 338.60119 * 18 16 13 41 41 H 1.09001 * 110.31185 * 100.77177 * 18 16 13 42 42 H 1.09003 * 109.91464 * 118.12581 * 19 18 16 43 43 H 1.08998 * 109.91891 * 239.22453 * 19 18 16 44 44 H 1.08994 * 109.47158 * 189.87401 * 21 20 19 45 45 H 1.09001 * 109.47001 * 309.86926 * 21 20 19 46 46 H 1.07993 * 119.99924 * 359.97438 * 23 22 21 47 47 H 1.08004 * 120.00086 * 180.24983 * 24 23 22 48 48 H 1.07998 * 120.00148 * 179.76979 * 25 24 23 49 49 H 1.07997 * 120.00288 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.99965 * 0.02562 * 27 22 21 51 51 H 1.08995 * 110.67145 * 202.36290 * 28 20 19 52 52 H 1.09009 * 110.66327 * 79.22730 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6259 1.9743 -0.8567 5 6 3.5444 1.4434 -0.0874 6 1 4.1332 1.8104 0.7403 7 6 4.1690 0.9810 -1.2263 8 7 5.4692 0.7834 -1.2292 9 14 3.1685 0.6353 -2.7655 10 1 3.2015 1.8241 -3.6548 11 1 3.7450 -0.5326 -3.4787 12 1 1.7634 0.3396 -2.3864 13 7 1.6212 2.1100 1.2398 14 6 1.7199 1.1985 2.3876 15 6 3.1905 0.8703 2.6532 16 6 0.2615 2.6512 1.1128 17 1 -0.4613 1.8467 0.9770 18 6 0.1816 3.6613 -0.0549 19 6 -0.7239 4.7970 0.4569 20 7 -1.1523 4.4277 1.8235 21 6 -1.2864 5.6187 2.6730 22 6 -2.4743 6.4279 2.2200 23 6 -2.3143 7.4164 1.2670 24 6 -3.4048 8.1553 0.8480 25 6 -4.6535 7.9125 1.3892 26 6 -4.8124 6.9278 2.3463 27 6 -3.7228 6.1853 2.7615 28 6 -0.1013 3.5172 2.3454 29 1 -0.3634 -0.9960 -0.2534 30 1 -0.3634 0.2785 0.9892 31 1 -0.3633 0.7174 -0.7358 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8902 34 1 5.9086 0.4577 -2.0303 35 1 1.2893 1.6753 3.2682 36 1 1.1761 0.2794 2.1696 37 1 3.2734 0.2934 3.5743 38 1 3.5885 0.2876 1.8225 39 1 3.7573 1.7961 2.7520 40 1 1.1737 4.0458 -0.2911 41 1 -0.2615 3.1907 -0.9326 42 1 -0.1664 5.7333 0.4828 43 1 -1.5930 4.9003 -0.1927 44 1 -1.4295 5.3117 3.7090 45 1 -0.3833 6.2241 2.5950 46 1 -1.3380 7.6090 0.8475 47 1 -3.2806 8.9249 0.1005 48 1 -5.5048 8.4923 1.0645 49 1 -5.7878 6.7384 2.7695 50 1 -3.8468 5.4163 3.5096 51 1 -0.4953 2.8957 3.1495 52 1 0.7651 4.0846 2.6854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:31 Heat of formation + Delta-G solvation = 56.193283 kcal Electronic energy + Delta-G solvation = -27736.081754 eV Core-core repulsion = 24315.150514 eV Total energy + Delta-G solvation = -3420.931240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.86875 -39.02336 -37.15613 -33.24481 -32.35066 -31.52387 -31.02539 -30.35351 -29.03655 -28.36001 -26.52504 -25.01346 -22.77468 -22.57973 -22.23002 -21.34523 -20.30894 -20.10319 -18.58217 -17.06157 -16.80015 -16.14377 -15.77299 -15.61536 -15.23494 -15.00499 -14.22079 -13.91903 -13.79123 -13.52916 -13.34078 -13.14345 -12.85968 -12.68662 -12.55792 -12.50867 -12.24364 -11.86100 -11.74573 -11.57664 -11.41957 -11.21787 -11.13156 -10.96683 -10.89423 -10.78237 -10.70069 -10.53139 -10.37081 -10.20667 -9.83788 -9.63243 -9.27035 -9.03297 -8.97306 -8.90026 -8.36457 -8.30722 -7.19310 -6.03516 -3.96124 1.21785 1.29042 3.28242 3.37878 3.41085 3.59605 4.18346 4.44832 4.61847 4.72689 4.85723 4.86757 4.95843 4.98198 5.13142 5.20195 5.24954 5.37131 5.43838 5.53841 5.54590 5.61165 5.76511 5.83572 5.86775 5.88394 5.91548 5.92788 5.95894 6.06159 6.09470 6.15491 6.26903 6.32354 6.34588 6.37818 6.40187 6.49667 6.53175 6.55047 6.60643 6.66283 6.80530 6.86897 6.90557 6.99310 7.06191 7.09987 7.24813 7.49388 7.73462 8.02980 8.18389 8.73066 9.10607 9.61537 11.08868 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.003240 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.522408 B = 8640.102736 C = 9121.239969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.163 4.163 3 C 0.189 3.811 4 H 0.034 0.966 5 C -0.497 4.497 6 H 0.090 0.910 7 C 0.071 3.929 8 N -0.898 5.898 9 Si 0.853 3.147 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.250 1.250 13 N -0.511 5.511 14 C 0.055 3.945 15 C -0.147 4.147 16 C 0.066 3.934 17 H 0.064 0.936 18 C -0.125 4.125 19 C 0.043 3.957 20 N -0.512 5.512 21 C 0.084 3.916 22 C -0.070 4.070 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.100 4.100 28 C 0.045 3.955 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.261 0.739 35 H 0.048 0.952 36 H 0.035 0.965 37 H 0.029 0.971 38 H 0.091 0.909 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.121 0.879 51 H 0.074 0.926 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.596 9.818 7.005 21.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.202 4.202 3 C 0.082 3.918 4 H 0.052 0.948 5 C -0.535 4.535 6 H 0.108 0.892 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.681 3.319 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.175 1.175 13 N -0.236 5.236 14 C -0.073 4.073 15 C -0.205 4.205 16 C -0.043 4.043 17 H 0.081 0.919 18 C -0.163 4.163 19 C -0.085 4.085 20 N -0.236 5.236 21 C -0.044 4.044 22 C -0.071 4.071 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.119 4.119 28 C -0.083 4.083 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.048 0.952 38 H 0.109 0.891 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.092 0.908 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.611 9.899 6.980 21.374 hybrid contribution -0.237 -0.445 -1.212 1.313 sum -17.849 9.454 5.768 21.005 Atomic orbital electron populations 1.22164 0.98606 1.00087 1.00590 1.22732 0.92882 1.02407 1.02152 1.19741 0.96719 0.87860 0.87494 0.94834 1.21138 0.88718 1.40813 1.02793 0.89228 1.24894 0.94585 0.95231 0.98287 1.69922 1.09015 1.46129 1.28603 0.87396 0.82137 0.77934 0.84463 1.20927 1.21604 1.17461 1.62401 1.19574 1.36643 1.04957 1.22042 0.97940 0.94658 0.92701 1.22027 0.95762 1.01882 1.00791 1.22806 0.91964 0.96053 0.93497 0.91885 1.22478 1.00315 0.95578 0.97911 1.22840 0.97901 0.97351 0.90433 1.64753 1.43472 1.13298 1.02110 1.21199 0.94741 0.90900 0.97575 1.19779 0.94992 0.95677 0.96628 1.21105 0.98955 0.95973 0.97082 1.21112 0.92919 0.99875 1.00085 1.21121 0.97270 0.98456 0.97513 1.21133 0.98660 0.96420 0.97929 1.21025 0.92059 0.98852 0.99970 1.23235 0.92686 0.94837 0.97546 0.94322 0.92884 0.93452 0.92229 0.91566 0.92864 0.93309 0.94744 0.95206 0.89053 0.92578 0.89693 0.91828 0.93929 0.91025 0.90078 0.93607 0.86315 0.86271 0.86413 0.86285 0.86071 0.90792 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 8.06 37.16 0.30 -2.45 16 2 C -0.16 -3.36 4.04 -26.73 -0.11 -3.47 16 3 C 0.19 4.16 1.20 -68.87 -0.08 4.08 16 4 H 0.03 0.77 5.03 -51.93 -0.26 0.51 16 5 C -0.50 -13.02 7.03 -34.44 -0.24 -13.26 16 6 H 0.09 2.56 6.05 -52.49 -0.32 2.25 16 7 C 0.07 1.96 5.39 -17.82 -0.10 1.87 16 8 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 9 Si 0.85 20.61 25.76 -169.99 -4.38 16.23 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.25 -5.66 5.24 56.52 0.30 -5.36 16 13 N -0.51 -9.84 4.26 -217.88 -0.93 -10.77 16 14 C 0.05 0.97 4.85 -3.82 -0.02 0.95 16 15 C -0.15 -2.83 8.28 37.16 0.31 -2.52 16 16 C 0.07 1.09 2.20 -65.85 -0.14 0.95 16 17 H 0.06 1.07 4.34 -51.93 -0.23 0.84 16 18 C -0.12 -2.02 5.10 -25.37 -0.13 -2.14 16 19 C 0.04 0.59 5.63 -2.75 -0.02 0.58 16 20 N -0.51 -6.85 5.25 -231.89 -1.22 -8.07 16 21 C 0.08 0.96 4.92 -4.98 -0.02 0.94 16 22 C -0.07 -0.78 5.10 -104.62 -0.53 -1.32 16 23 C -0.11 -1.20 8.95 -39.58 -0.35 -1.55 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.13 -1.15 10.05 -39.58 -0.40 -1.54 16 26 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 27 C -0.10 -1.04 9.70 -39.58 -0.38 -1.43 16 28 C 0.04 0.64 5.05 -1.90 -0.01 0.63 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.87 4.91 -51.93 -0.25 0.61 16 31 H 0.05 0.83 7.72 -51.93 -0.40 0.43 16 32 H 0.06 1.32 4.68 -51.93 -0.24 1.08 16 33 H 0.07 1.36 5.14 -51.92 -0.27 1.10 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.05 0.77 6.71 -51.93 -0.35 0.43 16 36 H 0.03 0.61 4.52 -51.93 -0.23 0.38 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 2.05 5.14 -51.93 -0.27 1.78 16 39 H 0.06 1.14 7.62 -51.93 -0.40 0.74 16 40 H 0.08 1.54 7.79 -51.93 -0.40 1.13 16 41 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 42 H 0.04 0.56 6.94 -51.93 -0.36 0.20 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 0.85 8.06 -51.93 -0.42 0.43 16 45 H 0.05 0.53 7.76 -51.93 -0.40 0.13 16 46 H 0.12 1.19 7.50 -52.49 -0.39 0.79 16 47 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 50 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 51 H 0.07 1.00 7.75 -51.93 -0.40 0.60 16 52 H 0.06 0.85 8.02 -51.92 -0.42 0.43 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -28.39 373.03 -11.49 -39.88 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.63 Total: 5.77 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -2.73 Total: -22.82 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -1.37 Total: -44.69 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.38 Total: 16.23 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.39 -11.49 -39.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.077 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds