Wall clock time and date at job start Tue Mar 31 2020 11:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47374 * 2 1 4 4 H 1.09004 * 109.46763 * 303.53473 * 3 2 1 5 5 C 1.50694 * 109.47300 * 183.52744 * 3 2 1 6 6 H 1.08001 * 120.00100 * 245.74308 * 5 3 2 7 7 C 1.37875 * 119.99508 * 66.02303 * 5 3 2 8 8 N 1.31522 * 119.99880 * 190.67577 * 7 5 3 9 9 Si 1.86799 * 120.00572 * 10.67824 * 7 5 3 10 10 H 1.48502 * 109.47275 * 94.89229 * 9 7 5 11 11 H 1.48491 * 109.47245 * 214.89278 * 9 7 5 12 12 H 1.48500 * 109.46857 * 334.89383 * 9 7 5 13 13 N 1.46903 * 109.47090 * 63.52515 * 3 2 1 14 14 C 1.46904 * 110.99765 * 39.21180 * 13 3 2 15 15 C 1.53001 * 109.47098 * 66.95921 * 14 13 3 16 16 C 1.46892 * 111.00245 * 275.25743 * 13 3 2 17 17 H 1.09005 * 110.64630 * 64.37843 * 16 13 3 18 18 C 1.54595 * 110.72526 * 301.22604 * 16 13 3 19 19 C 1.54002 * 105.14164 * 219.68336 * 18 16 13 20 20 N 1.47902 * 107.05487 * 358.77725 * 19 18 16 21 21 C 1.46897 * 111.00030 * 145.84713 * 20 19 18 22 22 C 1.50701 * 109.47502 * 69.86610 * 21 20 19 23 23 C 1.38234 * 120.00048 * 269.73093 * 22 21 20 24 24 C 1.38233 * 119.99676 * 179.76580 * 23 22 21 25 25 C 1.38241 * 120.00106 * 0.48439 * 24 23 22 26 26 C 1.38234 * 119.99978 * 359.79156 * 25 24 23 27 27 C 1.38235 * 119.99629 * 90.00326 * 22 21 20 28 28 C 1.48531 * 105.82563 * 25.32615 * 20 19 18 29 29 H 1.09004 * 109.47312 * 165.72790 * 1 2 3 30 30 H 1.09007 * 109.47578 * 285.72451 * 1 2 3 31 31 H 1.08996 * 109.46989 * 45.72311 * 1 2 3 32 32 H 1.08996 * 109.47468 * 239.99435 * 2 1 3 33 33 H 1.09012 * 109.46698 * 119.99444 * 2 1 3 34 34 H 0.97000 * 120.00350 * 179.97438 * 8 7 5 35 35 H 1.09003 * 109.46693 * 186.95718 * 14 13 3 36 36 H 1.08996 * 109.47425 * 306.95380 * 14 13 3 37 37 H 1.08998 * 109.47222 * 173.21586 * 15 14 13 38 38 H 1.08996 * 109.47128 * 293.21715 * 15 14 13 39 39 H 1.08998 * 109.47033 * 53.21333 * 15 14 13 40 40 H 1.09001 * 110.31123 * 338.60119 * 18 16 13 41 41 H 1.09001 * 110.31185 * 100.77177 * 18 16 13 42 42 H 1.09003 * 109.91464 * 118.12581 * 19 18 16 43 43 H 1.08998 * 109.91891 * 239.22453 * 19 18 16 44 44 H 1.08994 * 109.47158 * 189.87401 * 21 20 19 45 45 H 1.09001 * 109.47001 * 309.86926 * 21 20 19 46 46 H 1.07993 * 119.99924 * 359.97438 * 23 22 21 47 47 H 1.08004 * 120.00086 * 180.24983 * 24 23 22 48 48 H 1.07998 * 120.00148 * 179.76979 * 25 24 23 49 49 H 1.07997 * 120.00288 * 179.97438 * 26 25 24 50 50 H 1.08001 * 119.99965 * 0.02562 * 27 22 21 51 51 H 1.08995 * 110.67145 * 202.36290 * 28 20 19 52 52 H 1.09009 * 110.66327 * 79.22730 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6259 1.9743 -0.8567 5 6 3.5444 1.4434 -0.0874 6 1 4.1332 1.8104 0.7403 7 6 4.1690 0.9810 -1.2263 8 7 5.4692 0.7834 -1.2292 9 14 3.1685 0.6353 -2.7655 10 1 3.2015 1.8241 -3.6548 11 1 3.7450 -0.5326 -3.4787 12 1 1.7634 0.3396 -2.3864 13 7 1.6212 2.1100 1.2398 14 6 1.7199 1.1985 2.3876 15 6 3.1905 0.8703 2.6532 16 6 0.2615 2.6512 1.1128 17 1 -0.4613 1.8467 0.9770 18 6 0.1816 3.6613 -0.0549 19 6 -0.7239 4.7970 0.4569 20 7 -1.1523 4.4277 1.8235 21 6 -1.2864 5.6187 2.6730 22 6 -2.4743 6.4279 2.2200 23 6 -2.3143 7.4164 1.2670 24 6 -3.4048 8.1553 0.8480 25 6 -4.6535 7.9125 1.3892 26 6 -4.8124 6.9278 2.3463 27 6 -3.7228 6.1853 2.7615 28 6 -0.1013 3.5172 2.3454 29 1 -0.3634 -0.9960 -0.2534 30 1 -0.3634 0.2785 0.9892 31 1 -0.3633 0.7174 -0.7358 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8902 34 1 5.9086 0.4577 -2.0303 35 1 1.2893 1.6753 3.2682 36 1 1.1761 0.2794 2.1696 37 1 3.2734 0.2934 3.5743 38 1 3.5885 0.2876 1.8225 39 1 3.7573 1.7961 2.7520 40 1 1.1737 4.0458 -0.2911 41 1 -0.2615 3.1907 -0.9326 42 1 -0.1664 5.7333 0.4828 43 1 -1.5930 4.9003 -0.1927 44 1 -1.4295 5.3117 3.7090 45 1 -0.3833 6.2241 2.5950 46 1 -1.3380 7.6090 0.8475 47 1 -3.2806 8.9249 0.1005 48 1 -5.5048 8.4923 1.0645 49 1 -5.7878 6.7384 2.7695 50 1 -3.8468 5.4163 3.5096 51 1 -0.4953 2.8957 3.1495 52 1 0.7651 4.0846 2.6854 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174670.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:30 Heat of formation + Delta-G solvation = 39.279513 kcal Electronic energy + Delta-G solvation = -27736.815190 eV Core-core repulsion = 24315.150514 eV Total energy + Delta-G solvation = -3421.664676 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01151 -40.05156 -38.40725 -34.74627 -33.85660 -33.13511 -31.74143 -31.46634 -30.31650 -29.99816 -27.92221 -26.09239 -24.43082 -23.63513 -23.39793 -22.29780 -21.61676 -21.33020 -20.12096 -18.91004 -17.66892 -17.54838 -16.98687 -16.87154 -16.16901 -15.98908 -15.93182 -15.18780 -14.92782 -14.76646 -14.52262 -14.29672 -14.21157 -14.14412 -13.79888 -13.65395 -13.39203 -13.36168 -13.14882 -12.94383 -12.79947 -12.68012 -12.55780 -12.36933 -12.26847 -12.03411 -11.83990 -11.81148 -11.71092 -11.66032 -11.46318 -11.23559 -11.00758 -10.87708 -10.44371 -9.76051 -9.68978 -9.34405 -8.71662 -8.17720 -6.12128 0.47638 0.56688 1.33456 1.39501 1.46001 2.40879 2.76397 3.12312 3.16215 3.48870 3.70327 3.77329 3.99389 4.03365 4.13472 4.22316 4.26415 4.32854 4.38408 4.41334 4.42115 4.45221 4.53416 4.60288 4.64093 4.66617 4.70886 4.76852 4.81892 4.87829 4.89543 4.98432 5.00518 5.04782 5.11195 5.15453 5.16972 5.22225 5.22549 5.25531 5.31793 5.44688 5.59727 5.61589 5.67611 5.73253 5.77022 5.81817 5.90918 6.04857 6.18559 6.23108 6.62767 6.85936 6.94413 7.48755 8.98237 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.003240 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.522408 B = 8640.102736 C = 9121.239969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.161 4.161 3 C 0.196 3.804 4 H 0.028 0.972 5 C -0.484 4.484 6 H 0.053 0.947 7 C 0.013 3.987 8 N -0.950 5.950 9 Si 0.910 3.090 10 H -0.285 1.285 11 H -0.295 1.295 12 H -0.223 1.223 13 N -0.526 5.526 14 C 0.057 3.943 15 C -0.139 4.139 16 C 0.066 3.934 17 H 0.070 0.930 18 C -0.126 4.126 19 C 0.053 3.947 20 N -0.511 5.511 21 C 0.086 3.914 22 C -0.085 4.085 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.111 4.111 28 C 0.053 3.947 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.259 0.741 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.042 0.958 46 H 0.118 0.882 47 H 0.135 0.865 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.130 0.870 51 H 0.090 0.910 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.409 10.169 7.681 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.200 4.200 3 C 0.088 3.912 4 H 0.046 0.954 5 C -0.522 4.522 6 H 0.072 0.928 7 C -0.183 4.183 8 N -0.592 5.592 9 Si 0.736 3.264 10 H -0.212 1.212 11 H -0.221 1.221 12 H -0.146 1.146 13 N -0.251 5.251 14 C -0.070 4.070 15 C -0.196 4.196 16 C -0.043 4.043 17 H 0.087 0.913 18 C -0.164 4.164 19 C -0.075 4.075 20 N -0.235 5.235 21 C -0.041 4.041 22 C -0.085 4.085 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.130 4.130 28 C -0.075 4.075 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.111 0.889 45 H 0.060 0.940 46 H 0.136 0.864 47 H 0.153 0.847 48 H 0.158 0.842 49 H 0.158 0.842 50 H 0.148 0.852 51 H 0.108 0.892 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.461 10.262 7.675 24.996 hybrid contribution 0.963 -0.469 -1.309 1.692 sum -20.498 9.793 6.366 23.592 Atomic orbital electron populations 1.22061 0.95547 1.01371 1.01577 1.22597 0.95538 1.00637 1.01245 1.19490 0.93705 0.89185 0.88810 0.95386 1.21402 0.91172 1.38474 1.01171 0.92845 1.25614 0.95365 0.95844 1.01440 1.70073 1.11004 1.48745 1.29345 0.86470 0.82128 0.77253 0.80543 1.21215 1.22123 1.14601 1.62259 1.21863 1.36805 1.04150 1.22067 0.96778 0.95068 0.93115 1.21873 0.96654 1.00527 1.00562 1.22854 0.90218 0.96362 0.94826 0.91293 1.22446 0.99436 0.96382 0.98132 1.22726 0.97540 0.96396 0.90888 1.64788 1.42573 1.14146 1.01983 1.21213 0.94954 0.90162 0.97796 1.19798 0.95149 0.96186 0.97417 1.21228 0.99433 0.96442 0.97434 1.21381 0.92929 1.00079 1.00409 1.21459 0.97803 0.98378 0.97051 1.21443 0.99362 0.96046 0.97764 1.21218 0.92088 0.99376 1.00277 1.23141 0.92721 0.94742 0.96849 0.92441 0.91439 0.93394 0.93949 0.91821 0.93171 0.90590 0.93916 0.92434 0.92908 0.94657 0.92319 0.91776 0.93719 0.90464 0.88936 0.94026 0.86418 0.84701 0.84194 0.84197 0.85238 0.89180 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 8.06 71.98 0.58 -4.13 16 2 C -0.16 -6.42 4.04 30.59 0.12 -6.30 16 3 C 0.20 8.58 1.20 44.17 0.05 8.63 16 4 H 0.03 1.27 5.03 -2.38 -0.01 1.26 16 5 C -0.48 -26.22 7.03 25.60 0.18 -26.04 16 6 H 0.05 3.23 6.05 -2.91 -0.02 3.21 16 7 C 0.01 0.77 5.39 84.65 0.46 1.22 16 8 N -0.95 -58.87 13.96 21.45 0.30 -58.57 16 9 Si 0.91 43.28 25.76 68.60 1.77 45.05 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 12 H -0.22 -9.53 5.24 99.48 0.52 -9.01 16 13 N -0.53 -19.85 4.26 -843.26 -3.59 -23.44 16 14 C 0.06 1.94 4.85 86.30 0.42 2.36 16 15 C -0.14 -5.35 8.28 71.98 0.60 -4.76 16 16 C 0.07 2.06 2.20 46.12 0.10 2.16 16 17 H 0.07 2.11 4.34 -2.38 -0.01 2.10 16 18 C -0.13 -3.93 5.10 31.48 0.16 -3.77 16 19 C 0.05 1.37 5.63 86.45 0.49 1.86 16 20 N -0.51 -12.53 5.25 -887.55 -4.66 -17.19 16 21 C 0.09 1.82 4.92 85.56 0.42 2.24 16 22 C -0.09 -1.74 5.10 -19.87 -0.10 -1.84 16 23 C -0.13 -2.52 8.95 22.27 0.20 -2.32 16 24 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 25 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 26 C -0.13 -2.05 10.05 22.27 0.22 -1.83 16 27 C -0.11 -2.05 9.70 22.27 0.22 -1.83 16 28 C 0.05 1.41 5.05 86.65 0.44 1.85 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 1.95 4.91 -2.38 -0.01 1.94 16 31 H 0.05 1.52 7.72 -2.39 -0.02 1.50 16 32 H 0.04 1.82 4.68 -2.39 -0.01 1.81 16 33 H 0.06 2.55 5.14 -2.38 -0.01 2.54 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.08 2.19 6.71 -2.39 -0.02 2.18 16 36 H 0.04 1.40 4.52 -2.39 -0.01 1.39 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 2.44 5.14 -2.39 -0.01 2.43 16 39 H 0.03 1.47 7.62 -2.39 -0.02 1.45 16 40 H 0.06 2.14 7.79 -2.39 -0.02 2.12 16 41 H 0.06 1.97 8.08 -2.39 -0.02 1.95 16 42 H 0.04 1.14 6.94 -2.39 -0.02 1.12 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.09 1.73 8.06 -2.39 -0.02 1.71 16 45 H 0.04 0.91 7.76 -2.39 -0.02 0.89 16 46 H 0.12 2.25 7.50 -2.91 -0.02 2.23 16 47 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 48 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 49 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 50 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 51 H 0.09 2.11 7.75 -2.39 -0.02 2.10 16 52 H 0.04 1.29 8.02 -2.38 -0.02 1.27 16 Total: -1.00 -63.40 373.03 -0.48 -63.88 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.71 Total: 26.56 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 5.00 Total: -36.28 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -7.96 Total: -99.20 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.77 Total: 45.05 kcal Total: -63.40 -0.48 -63.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174670.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.161 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds