Wall clock time and date at job start Tue Mar 31 2020 11:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46866 * 2 1 4 4 H 1.09000 * 109.47325 * 52.75021 * 3 2 1 5 5 C 1.50700 * 109.47077 * 172.75299 * 3 2 1 6 6 H 1.08005 * 120.00124 * 115.80035 * 5 3 2 7 7 C 1.37870 * 120.00097 * 295.79423 * 5 3 2 8 8 N 1.31519 * 120.00239 * 349.22686 * 7 5 3 9 9 Si 1.86805 * 120.00188 * 169.50067 * 7 5 3 10 10 H 1.48495 * 109.47383 * 179.72571 * 9 7 5 11 11 H 1.48493 * 109.46898 * 299.72888 * 9 7 5 12 12 H 1.48503 * 109.46698 * 59.72773 * 9 7 5 13 13 N 1.46905 * 109.47072 * 292.75233 * 3 2 1 14 14 C 1.46897 * 110.99857 * 318.26871 * 13 3 2 15 15 C 1.53006 * 109.46686 * 198.29272 * 14 13 3 16 16 C 1.46896 * 111.00068 * 82.22475 * 13 3 2 17 17 H 1.09000 * 110.62781 * 289.27039 * 16 13 3 18 18 C 1.55146 * 110.70616 * 52.36753 * 16 13 3 19 19 C 1.55111 * 101.55742 * 153.90944 * 18 16 13 20 20 N 1.47851 * 104.90796 * 323.15984 * 19 18 16 21 21 C 1.46896 * 110.99978 * 146.24233 * 20 19 18 22 22 C 1.50700 * 109.47287 * 69.15821 * 21 20 19 23 23 C 1.38233 * 119.99897 * 269.72199 * 22 21 20 24 24 C 1.38242 * 119.99595 * 179.76454 * 23 22 21 25 25 C 1.38228 * 120.00099 * 0.51240 * 24 23 22 26 26 C 1.38241 * 120.00162 * 359.74305 * 25 24 23 27 27 C 1.38236 * 119.99754 * 0.02562 * 26 25 24 28 28 C 1.47439 * 108.56239 * 23.97325 * 20 19 18 29 29 H 1.08997 * 109.47057 * 317.80690 * 1 2 3 30 30 H 1.08991 * 109.47423 * 77.80822 * 1 2 3 31 31 H 1.09003 * 109.46969 * 197.80924 * 1 2 3 32 32 H 1.08996 * 109.46824 * 240.00356 * 2 1 3 33 33 H 1.08993 * 109.47666 * 120.00131 * 2 1 3 34 34 H 0.97000 * 119.99436 * 359.02654 * 8 7 5 35 35 H 1.08995 * 109.47417 * 318.28966 * 14 13 3 36 36 H 1.08998 * 109.47418 * 78.29925 * 14 13 3 37 37 H 1.08997 * 109.47537 * 293.81876 * 15 14 13 38 38 H 1.08997 * 109.47162 * 53.82223 * 15 14 13 39 39 H 1.08999 * 109.46872 * 173.81702 * 15 14 13 40 40 H 1.09003 * 110.99329 * 272.12636 * 18 16 13 41 41 H 1.09003 * 110.99038 * 35.94896 * 18 16 13 42 42 H 1.09009 * 110.42590 * 204.24004 * 19 18 16 43 43 H 1.09000 * 110.21742 * 81.97237 * 19 18 16 44 44 H 1.08999 * 109.46566 * 189.15917 * 21 20 19 45 45 H 1.08997 * 109.47352 * 309.15380 * 21 20 19 46 46 H 1.07996 * 120.00037 * 0.02562 * 23 22 21 47 47 H 1.08002 * 119.99559 * 180.22968 * 24 23 22 48 48 H 1.07999 * 120.00034 * 179.72449 * 25 24 23 49 49 H 1.07991 * 120.00106 * 179.97438 * 26 25 24 50 50 H 1.07999 * 119.99947 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.88784 * 239.60484 * 28 20 19 52 52 H 1.08998 * 110.02301 * 118.49876 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5746 1.9924 0.8180 5 6 3.5362 1.4464 0.1792 6 1 4.1736 1.8191 -0.6090 7 6 4.0916 0.9742 1.3495 8 7 3.3233 0.7199 2.3862 9 14 5.9362 0.7030 1.4652 10 1 6.2788 0.2011 2.8201 11 1 6.3546 -0.2942 0.4475 12 1 6.6415 1.9865 1.2197 13 7 1.6981 2.0827 -1.2773 14 6 1.9233 1.1658 -2.4026 15 6 2.0046 1.9661 -3.7041 16 6 0.3133 2.5728 -1.2665 17 1 -0.3891 1.7397 -1.2929 18 6 0.0575 3.4668 -0.0246 19 6 -1.0963 4.3737 -0.5269 20 7 -0.7883 4.6276 -1.9505 21 6 -2.0196 4.7378 -2.7439 22 6 -2.7454 6.0049 -2.3718 23 6 -3.6827 5.9916 -1.3558 24 6 -4.3450 7.1551 -1.0112 25 6 -4.0776 8.3294 -1.6896 26 6 -3.1441 8.3416 -2.7091 27 6 -2.4784 7.1792 -3.0506 28 6 0.0652 3.5334 -2.4485 29 1 -0.3633 0.7614 0.6902 30 1 -0.3634 0.2170 -1.0044 31 1 -0.3633 -0.9785 0.3143 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.3678 0.8779 2.3321 35 1 2.8573 0.6252 -2.2495 36 1 1.0984 0.4559 -2.4636 37 1 1.0353 2.4183 -3.9138 38 1 2.7564 2.7489 -3.6029 39 1 2.2803 1.3014 -4.5227 40 1 -0.2570 2.8675 0.8299 41 1 0.9399 4.0586 0.2190 42 1 -1.1142 5.3103 0.0305 43 1 -2.0509 3.8562 -0.4316 44 1 -1.7676 4.7613 -3.8041 45 1 -2.6602 3.8793 -2.5418 46 1 -3.8945 5.0732 -0.8286 47 1 -5.0746 7.1455 -0.2150 48 1 -4.5983 9.2374 -1.4233 49 1 -2.9356 9.2589 -3.2394 50 1 -1.7494 7.1885 -3.8473 51 1 1.0136 3.9356 -2.8047 52 1 -0.4399 3.0044 -3.2566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:35 Heat of formation + Delta-G solvation = 45.029505 kcal Electronic energy + Delta-G solvation = -27771.470253 eV Core-core repulsion = 24350.054915 eV Total energy + Delta-G solvation = -3421.415338 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.91509 -38.99975 -36.92693 -33.53975 -32.62004 -31.48054 -31.00198 -30.21506 -28.76848 -28.24060 -25.93301 -24.96793 -23.03940 -22.69295 -21.96402 -21.47793 -20.64140 -20.06557 -18.97406 -17.00384 -16.75642 -15.97166 -15.78851 -15.32025 -15.11458 -14.56753 -14.19375 -14.06796 -13.74319 -13.69095 -13.50071 -13.21066 -12.89600 -12.74232 -12.71323 -12.32856 -12.10097 -12.01851 -11.80554 -11.45586 -11.42963 -11.22199 -11.01521 -10.89481 -10.78875 -10.73733 -10.63181 -10.56009 -10.36724 -10.11264 -10.04504 -9.94448 -9.59547 -9.01033 -8.88776 -8.61804 -8.21131 -8.11282 -7.17425 -6.31101 -3.98311 1.24005 1.31248 3.47305 3.48089 3.62183 3.66820 4.24266 4.53409 4.64670 4.74351 4.80173 4.88907 4.95540 5.04450 5.12645 5.22183 5.37121 5.38908 5.45031 5.51339 5.54930 5.56067 5.66679 5.70965 5.80420 5.89255 5.89948 5.93249 5.94894 5.99482 6.10642 6.15665 6.16358 6.28287 6.31925 6.34714 6.39973 6.44437 6.52900 6.55790 6.60130 6.70206 6.73195 6.77978 6.89638 6.97795 7.12131 7.17362 7.21104 7.36471 7.98168 8.13787 8.40467 8.67920 8.93779 9.69674 11.05880 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.003086 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.002929 B = 9070.752882 C = 9323.231310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.156 4.156 3 C 0.205 3.795 4 H 0.036 0.964 5 C -0.578 4.578 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 1.064 2.936 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.509 5.509 14 C 0.057 3.943 15 C -0.157 4.157 16 C 0.053 3.947 17 H 0.050 0.950 18 C -0.118 4.118 19 C 0.046 3.954 20 N -0.521 5.521 21 C 0.087 3.913 22 C -0.070 4.070 23 C -0.113 4.113 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.100 4.100 28 C 0.049 3.951 29 H 0.047 0.953 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.268 0.732 35 H 0.079 0.921 36 H 0.020 0.980 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.040 0.960 46 H 0.117 0.883 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.094 0.906 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.224 8.953 -10.230 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.196 4.196 3 C 0.098 3.902 4 H 0.054 0.946 5 C -0.617 4.617 6 H 0.073 0.927 7 C -0.184 4.184 8 N -0.549 5.549 9 Si 0.893 3.107 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.215 1.215 13 N -0.232 5.232 14 C -0.071 4.071 15 C -0.215 4.215 16 C -0.057 4.057 17 H 0.068 0.932 18 C -0.156 4.156 19 C -0.082 4.082 20 N -0.245 5.245 21 C -0.041 4.041 22 C -0.071 4.071 23 C -0.132 4.132 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.141 4.141 27 C -0.118 4.118 28 C -0.078 4.078 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.038 0.962 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.057 0.943 44 H 0.098 0.902 45 H 0.058 0.942 46 H 0.135 0.865 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.113 0.887 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.422 9.306 -9.328 18.108 hybrid contribution -2.259 -1.012 -0.805 2.603 sum -14.681 8.294 -10.133 19.672 Atomic orbital electron populations 1.22142 0.99024 1.00036 0.99873 1.22398 0.92293 1.02761 1.02139 1.19532 0.96699 0.87834 0.86132 0.94585 1.21884 0.90740 1.44945 1.04111 0.92660 1.25692 1.06500 0.94217 0.92005 1.70816 1.07128 1.46629 1.30368 0.83608 0.74769 0.76498 0.75825 1.21027 1.21633 1.21490 1.62328 1.17974 1.38471 1.04474 1.21965 1.00689 0.93747 0.90681 1.22169 1.01968 1.00627 0.96743 1.23128 0.92079 0.95990 0.94483 0.93217 1.22811 0.98513 0.97262 0.97018 1.23076 0.97044 0.99155 0.88922 1.63710 1.14418 1.44017 1.02342 1.21249 0.90788 0.93688 0.98360 1.19782 0.95913 0.95340 0.96050 1.21078 0.96678 0.98329 0.97095 1.21100 1.00084 0.92926 0.99894 1.21117 0.98618 0.97965 0.96638 1.21139 0.96948 0.98099 0.97880 1.21029 0.98823 0.92095 0.99865 1.23270 0.97796 0.90463 0.96250 0.93436 0.93760 0.94476 0.93148 0.91227 0.92065 0.90217 0.96216 0.92653 0.91986 0.93739 0.91278 0.89445 0.90602 0.94291 0.90190 0.94153 0.86478 0.86304 0.86397 0.86243 0.86021 0.88750 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.31 37.16 0.31 -2.55 16 2 C -0.16 -3.47 4.61 -26.73 -0.12 -3.59 16 3 C 0.20 4.82 1.35 -68.86 -0.09 4.73 16 4 H 0.04 0.92 5.09 -51.93 -0.26 0.66 16 5 C -0.58 -15.64 8.04 -34.44 -0.28 -15.92 16 6 H 0.06 1.54 7.84 -52.48 -0.41 1.13 16 7 C 0.02 0.55 5.11 -17.82 -0.09 0.45 16 8 N -0.91 -26.59 12.89 55.43 0.71 -25.88 16 9 Si 1.06 24.98 29.92 -169.99 -5.09 19.90 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.51 -10.29 4.21 -217.93 -0.92 -11.21 16 14 C 0.06 1.06 4.10 -3.82 -0.02 1.05 16 15 C -0.16 -2.41 8.73 37.16 0.32 -2.08 16 16 C 0.05 0.91 1.82 -65.89 -0.12 0.79 16 17 H 0.05 0.87 4.57 -51.93 -0.24 0.63 16 18 C -0.12 -2.03 4.99 -24.48 -0.12 -2.16 16 19 C 0.05 0.66 5.62 -2.18 -0.01 0.65 16 20 N -0.52 -7.39 5.15 -232.56 -1.20 -8.59 16 21 C 0.09 1.03 4.73 -4.98 -0.02 1.01 16 22 C -0.07 -0.81 5.09 -104.62 -0.53 -1.35 16 23 C -0.11 -1.24 8.94 -39.58 -0.35 -1.59 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 25 C -0.13 -1.19 10.05 -39.58 -0.40 -1.58 16 26 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 27 C -0.10 -1.08 9.70 -39.58 -0.38 -1.47 16 28 C 0.05 0.74 4.54 -2.84 -0.01 0.73 16 29 H 0.05 0.88 6.64 -51.93 -0.35 0.53 16 30 H 0.04 0.77 4.88 -51.93 -0.25 0.51 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 1.11 5.97 -51.93 -0.31 0.80 16 33 H 0.07 1.75 6.40 -51.93 -0.33 1.42 16 34 H 0.27 7.76 6.30 -40.82 -0.26 7.50 16 35 H 0.08 1.65 6.93 -51.93 -0.36 1.29 16 36 H 0.02 0.35 6.09 -51.93 -0.32 0.04 16 37 H 0.05 0.77 4.55 -51.93 -0.24 0.54 16 38 H 0.06 1.01 8.07 -51.93 -0.42 0.59 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 1.21 6.60 -51.93 -0.34 0.87 16 41 H 0.09 1.73 8.12 -51.93 -0.42 1.31 16 42 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 43 H 0.04 0.52 7.01 -51.93 -0.36 0.15 16 44 H 0.08 0.87 7.98 -51.93 -0.41 0.46 16 45 H 0.04 0.47 7.79 -51.93 -0.40 0.06 16 46 H 0.12 1.19 7.50 -52.49 -0.39 0.79 16 47 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 48 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 49 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 50 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 51 H 0.09 1.56 6.59 -51.93 -0.34 1.22 16 52 H 0.05 0.63 6.39 -51.93 -0.33 0.30 16 LS Contribution 377.26 15.07 5.69 5.69 Total: -1.00 -28.69 377.26 -12.04 -40.73 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -8.51 Total: 5.45 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -2.72 Total: -26.09 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: -1.40 Total: -45.68 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.09 Total: 19.90 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.69 -12.04 -40.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.755 kcal (2) G-P(sol) polarization free energy of solvation -28.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds