Wall clock time and date at job start Tue Mar 31 2020 11:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46866 * 2 1 4 4 H 1.09000 * 109.47325 * 52.75021 * 3 2 1 5 5 C 1.50700 * 109.47077 * 172.75299 * 3 2 1 6 6 H 1.08005 * 120.00124 * 115.80035 * 5 3 2 7 7 C 1.37870 * 120.00097 * 295.79423 * 5 3 2 8 8 N 1.31519 * 120.00239 * 349.22686 * 7 5 3 9 9 Si 1.86805 * 120.00188 * 169.50067 * 7 5 3 10 10 H 1.48495 * 109.47383 * 179.72571 * 9 7 5 11 11 H 1.48493 * 109.46898 * 299.72888 * 9 7 5 12 12 H 1.48503 * 109.46698 * 59.72773 * 9 7 5 13 13 N 1.46905 * 109.47072 * 292.75233 * 3 2 1 14 14 C 1.46897 * 110.99857 * 318.26871 * 13 3 2 15 15 C 1.53006 * 109.46686 * 198.29272 * 14 13 3 16 16 C 1.46896 * 111.00068 * 82.22475 * 13 3 2 17 17 H 1.09000 * 110.62781 * 289.27039 * 16 13 3 18 18 C 1.55146 * 110.70616 * 52.36753 * 16 13 3 19 19 C 1.55111 * 101.55742 * 153.90944 * 18 16 13 20 20 N 1.47851 * 104.90796 * 323.15984 * 19 18 16 21 21 C 1.46896 * 110.99978 * 146.24233 * 20 19 18 22 22 C 1.50700 * 109.47287 * 69.15821 * 21 20 19 23 23 C 1.38233 * 119.99897 * 269.72199 * 22 21 20 24 24 C 1.38242 * 119.99595 * 179.76454 * 23 22 21 25 25 C 1.38228 * 120.00099 * 0.51240 * 24 23 22 26 26 C 1.38241 * 120.00162 * 359.74305 * 25 24 23 27 27 C 1.38236 * 119.99754 * 0.02562 * 26 25 24 28 28 C 1.47439 * 108.56239 * 23.97325 * 20 19 18 29 29 H 1.08997 * 109.47057 * 317.80690 * 1 2 3 30 30 H 1.08991 * 109.47423 * 77.80822 * 1 2 3 31 31 H 1.09003 * 109.46969 * 197.80924 * 1 2 3 32 32 H 1.08996 * 109.46824 * 240.00356 * 2 1 3 33 33 H 1.08993 * 109.47666 * 120.00131 * 2 1 3 34 34 H 0.97000 * 119.99436 * 359.02654 * 8 7 5 35 35 H 1.08995 * 109.47417 * 318.28966 * 14 13 3 36 36 H 1.08998 * 109.47418 * 78.29925 * 14 13 3 37 37 H 1.08997 * 109.47537 * 293.81876 * 15 14 13 38 38 H 1.08997 * 109.47162 * 53.82223 * 15 14 13 39 39 H 1.08999 * 109.46872 * 173.81702 * 15 14 13 40 40 H 1.09003 * 110.99329 * 272.12636 * 18 16 13 41 41 H 1.09003 * 110.99038 * 35.94896 * 18 16 13 42 42 H 1.09009 * 110.42590 * 204.24004 * 19 18 16 43 43 H 1.09000 * 110.21742 * 81.97237 * 19 18 16 44 44 H 1.08999 * 109.46566 * 189.15917 * 21 20 19 45 45 H 1.08997 * 109.47352 * 309.15380 * 21 20 19 46 46 H 1.07996 * 120.00037 * 0.02562 * 23 22 21 47 47 H 1.08002 * 119.99559 * 180.22968 * 24 23 22 48 48 H 1.07999 * 120.00034 * 179.72449 * 25 24 23 49 49 H 1.07991 * 120.00106 * 179.97438 * 26 25 24 50 50 H 1.07999 * 119.99947 * 179.97438 * 27 26 25 51 51 H 1.09000 * 109.88784 * 239.60484 * 28 20 19 52 52 H 1.08998 * 110.02301 * 118.49876 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5746 1.9924 0.8180 5 6 3.5362 1.4464 0.1792 6 1 4.1736 1.8191 -0.6090 7 6 4.0916 0.9742 1.3495 8 7 3.3233 0.7199 2.3862 9 14 5.9362 0.7030 1.4652 10 1 6.2788 0.2011 2.8201 11 1 6.3546 -0.2942 0.4475 12 1 6.6415 1.9865 1.2197 13 7 1.6981 2.0827 -1.2773 14 6 1.9233 1.1658 -2.4026 15 6 2.0046 1.9661 -3.7041 16 6 0.3133 2.5728 -1.2665 17 1 -0.3891 1.7397 -1.2929 18 6 0.0575 3.4668 -0.0246 19 6 -1.0963 4.3737 -0.5269 20 7 -0.7883 4.6276 -1.9505 21 6 -2.0196 4.7378 -2.7439 22 6 -2.7454 6.0049 -2.3718 23 6 -3.6827 5.9916 -1.3558 24 6 -4.3450 7.1551 -1.0112 25 6 -4.0776 8.3294 -1.6896 26 6 -3.1441 8.3416 -2.7091 27 6 -2.4784 7.1792 -3.0506 28 6 0.0652 3.5334 -2.4485 29 1 -0.3633 0.7614 0.6902 30 1 -0.3634 0.2170 -1.0044 31 1 -0.3633 -0.9785 0.3143 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.3678 0.8779 2.3321 35 1 2.8573 0.6252 -2.2495 36 1 1.0984 0.4559 -2.4636 37 1 1.0353 2.4183 -3.9138 38 1 2.7564 2.7489 -3.6029 39 1 2.2803 1.3014 -4.5227 40 1 -0.2570 2.8675 0.8299 41 1 0.9399 4.0586 0.2190 42 1 -1.1142 5.3103 0.0305 43 1 -2.0509 3.8562 -0.4316 44 1 -1.7676 4.7613 -3.8041 45 1 -2.6602 3.8793 -2.5418 46 1 -3.8945 5.0732 -0.8286 47 1 -5.0746 7.1455 -0.2150 48 1 -4.5983 9.2374 -1.4233 49 1 -2.9356 9.2589 -3.2394 50 1 -1.7494 7.1885 -3.8473 51 1 1.0136 3.9356 -2.8047 52 1 -0.4399 3.0044 -3.2566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:33 Heat of formation + Delta-G solvation = 29.059593 kcal Electronic energy + Delta-G solvation = -27772.162760 eV Core-core repulsion = 24350.054915 eV Total energy + Delta-G solvation = -3422.107845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13008 -40.02782 -38.28727 -35.29225 -33.72956 -33.22773 -31.74669 -31.43504 -30.16819 -29.59878 -27.52028 -26.15205 -24.93015 -23.48266 -23.38888 -22.53735 -21.81744 -21.39665 -20.64111 -18.78183 -17.73561 -17.34696 -16.98776 -16.36967 -16.05862 -15.99291 -15.66606 -15.54106 -15.30486 -14.87791 -14.51394 -14.31049 -14.21793 -14.06978 -13.80183 -13.72773 -13.58952 -13.34227 -13.22609 -12.76352 -12.73325 -12.54531 -12.46020 -12.40955 -12.22172 -12.14424 -12.01849 -11.95293 -11.80559 -11.71258 -11.48241 -11.45092 -11.25675 -10.61467 -10.28129 -9.76678 -9.67453 -9.25390 -8.79546 -8.51908 -6.19327 0.46686 0.55650 1.53929 1.60562 1.79712 2.59171 2.77448 3.15116 3.24034 3.31648 3.62214 3.83479 3.91191 3.98705 4.07973 4.15320 4.20223 4.24640 4.30707 4.32519 4.36115 4.38112 4.42291 4.46109 4.58259 4.62292 4.67454 4.72251 4.73185 4.80460 4.85932 4.88249 4.93699 5.00321 5.03711 5.09322 5.14757 5.16288 5.20072 5.21831 5.28487 5.37319 5.48448 5.56170 5.60251 5.66503 5.73717 5.97695 6.06696 6.11183 6.18784 6.20150 6.61767 6.63234 6.86781 7.55746 8.84933 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019576 B = 0.003086 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.002929 B = 9070.752882 C = 9323.231310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.147 4.147 3 C 0.211 3.789 4 H 0.012 0.988 5 C -0.588 4.588 6 H 0.040 0.960 7 C -0.027 4.027 8 N -0.936 5.936 9 Si 1.106 2.894 10 H -0.287 1.287 11 H -0.274 1.274 12 H -0.277 1.277 13 N -0.522 5.522 14 C 0.059 3.941 15 C -0.147 4.147 16 C 0.055 3.945 17 H 0.057 0.943 18 C -0.117 4.117 19 C 0.060 3.940 20 N -0.529 5.529 21 C 0.090 3.910 22 C -0.087 4.087 23 C -0.125 4.125 24 C -0.130 4.130 25 C -0.129 4.129 26 C -0.129 4.129 27 C -0.113 4.113 28 C 0.060 3.940 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.034 0.966 34 H 0.258 0.742 35 H 0.050 0.950 36 H 0.029 0.971 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.121 0.879 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.127 0.873 51 H 0.080 0.920 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.779 9.625 -12.031 22.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.187 4.187 3 C 0.104 3.896 4 H 0.030 0.970 5 C -0.626 4.626 6 H 0.059 0.941 7 C -0.225 4.225 8 N -0.574 5.574 9 Si 0.929 3.071 10 H -0.212 1.212 11 H -0.200 1.200 12 H -0.203 1.203 13 N -0.246 5.246 14 C -0.069 4.069 15 C -0.204 4.204 16 C -0.055 4.055 17 H 0.074 0.926 18 C -0.156 4.156 19 C -0.067 4.067 20 N -0.253 5.253 21 C -0.038 4.038 22 C -0.087 4.087 23 C -0.144 4.144 24 C -0.148 4.148 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.132 4.132 28 C -0.067 4.067 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.065 0.935 46 H 0.139 0.861 47 H 0.154 0.846 48 H 0.158 0.842 49 H 0.157 0.843 50 H 0.145 0.855 51 H 0.098 0.902 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.996 9.988 -11.159 20.498 hybrid contribution -1.818 -1.145 -0.262 2.165 sum -15.814 8.843 -11.421 21.418 Atomic orbital electron populations 1.21998 0.95930 1.00930 1.00979 1.22202 0.95010 1.01175 1.00304 1.19248 0.94601 0.88555 0.87243 0.97007 1.22207 0.92815 1.44152 1.03434 0.94141 1.26913 1.09847 0.93867 0.91883 1.70917 1.06763 1.48516 1.31185 0.83059 0.70764 0.77234 0.75994 1.21246 1.19974 1.20281 1.62246 1.20323 1.38590 1.03440 1.21966 0.99475 0.94017 0.91474 1.22071 1.02661 1.00248 0.95414 1.23168 0.90297 0.96438 0.95571 0.92599 1.22703 0.98355 0.97406 0.97095 1.22920 0.96296 0.98428 0.89105 1.63665 1.15887 1.43514 1.02283 1.21284 0.89720 0.94244 0.98506 1.19835 0.96579 0.95439 0.96847 1.21236 0.96938 0.99026 0.97203 1.21394 1.00263 0.92797 1.00341 1.21458 0.98366 0.98741 0.96163 1.21438 0.96686 0.98558 0.98042 1.21221 0.99296 0.92420 1.00226 1.23107 0.97793 0.90154 0.95664 0.93759 0.91905 0.92912 0.93200 0.94679 0.93192 0.93136 0.95314 0.90852 0.93283 0.91541 0.92240 0.92838 0.90856 0.92605 0.89044 0.93485 0.86067 0.84558 0.84198 0.84339 0.85504 0.90180 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 8.31 71.98 0.60 -4.54 16 2 C -0.15 -6.66 4.61 30.59 0.14 -6.52 16 3 C 0.21 10.26 1.35 44.17 0.06 10.32 16 4 H 0.01 0.65 5.09 -2.39 -0.01 0.64 16 5 C -0.59 -32.86 8.04 25.60 0.21 -32.66 16 6 H 0.04 2.33 7.84 -2.91 -0.02 2.30 16 7 C -0.03 -1.52 5.11 84.65 0.43 -1.09 16 8 N -0.94 -56.37 12.89 21.45 0.28 -56.10 16 9 Si 1.11 51.15 29.92 68.60 2.05 53.20 16 10 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 13 N -0.52 -21.31 4.21 -843.41 -3.55 -24.86 16 14 C 0.06 2.13 4.10 86.31 0.35 2.48 16 15 C -0.15 -4.21 8.73 71.98 0.63 -3.58 16 16 C 0.05 1.84 1.82 46.10 0.08 1.93 16 17 H 0.06 1.84 4.57 -2.39 -0.01 1.83 16 18 C -0.12 -4.11 4.99 32.05 0.16 -3.95 16 19 C 0.06 1.68 5.62 86.84 0.49 2.17 16 20 N -0.53 -14.14 5.15 -889.67 -4.59 -18.73 16 21 C 0.09 1.91 4.73 85.56 0.40 2.32 16 22 C -0.09 -1.84 5.09 -19.87 -0.10 -1.94 16 23 C -0.13 -2.51 8.94 22.27 0.20 -2.32 16 24 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 25 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 26 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 27 C -0.11 -2.26 9.70 22.27 0.22 -2.05 16 28 C 0.06 1.70 4.54 86.65 0.39 2.10 16 29 H 0.04 1.62 6.64 -2.39 -0.02 1.61 16 30 H 0.06 2.04 4.88 -2.39 -0.01 2.03 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.05 2.21 5.97 -2.39 -0.01 2.20 16 33 H 0.03 1.81 6.40 -2.39 -0.02 1.80 16 34 H 0.26 15.63 6.30 -92.71 -0.58 15.04 16 35 H 0.05 2.11 6.93 -2.39 -0.02 2.10 16 36 H 0.03 0.98 6.09 -2.39 -0.01 0.97 16 37 H 0.07 1.84 4.55 -2.39 -0.01 1.82 16 38 H 0.05 1.54 8.07 -2.39 -0.02 1.52 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 2.16 6.60 -2.39 -0.02 2.14 16 41 H 0.05 2.22 8.12 -2.39 -0.02 2.20 16 42 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.06 1.38 7.01 -2.39 -0.02 1.36 16 44 H 0.09 1.73 7.98 -2.39 -0.02 1.71 16 45 H 0.05 0.95 7.79 -2.39 -0.02 0.93 16 46 H 0.12 2.23 7.50 -2.91 -0.02 2.21 16 47 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 48 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 49 H 0.14 1.79 8.06 -2.92 -0.02 1.76 16 50 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 51 H 0.08 2.54 6.59 -2.39 -0.02 2.52 16 52 H 0.07 1.65 6.39 -2.39 -0.02 1.64 16 Total: -1.00 -63.89 377.26 0.20 -63.69 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 1.08 Total: 26.14 kcal Atomic # 6 Polarization: -48.28 SS G_CDS: 4.93 Total: -43.35 kcal Atomic # 7 Polarization: -91.83 SS G_CDS: -7.86 Total: -99.69 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.20 kcal Total: -63.89 0.20 -63.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.750 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds