Wall clock time and date at job start Tue Mar 31 2020 11:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47147 * 2 1 4 4 H 1.09008 * 109.46546 * 59.50404 * 3 2 1 5 5 C 1.50699 * 109.47100 * 179.49870 * 3 2 1 6 6 H 1.08000 * 119.99688 * 115.99303 * 5 3 2 7 7 C 1.37875 * 120.00250 * 295.99905 * 5 3 2 8 8 N 1.31515 * 119.99892 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00005 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47305 * 90.00065 * 9 7 5 11 11 H 1.48508 * 109.47014 * 209.99711 * 9 7 5 12 12 H 1.48500 * 109.46981 * 329.99477 * 9 7 5 13 13 N 1.46891 * 109.47352 * 299.50301 * 3 2 1 14 14 C 1.46902 * 111.00066 * 173.62685 * 13 3 2 15 15 C 1.53005 * 109.47500 * 187.90831 * 14 13 3 16 16 C 1.46897 * 111.00245 * 297.57957 * 13 3 2 17 17 H 1.08999 * 110.90269 * 29.10490 * 16 13 3 18 18 C 1.55146 * 110.99157 * 265.24004 * 16 13 3 19 19 C 1.54319 * 103.01911 * 206.25315 * 18 16 13 20 20 N 1.47445 * 107.23390 * 22.28124 * 19 18 16 21 21 C 1.46897 * 110.99715 * 123.25565 * 20 19 18 22 22 C 1.50698 * 109.47494 * 49.16021 * 21 20 19 23 23 C 1.38230 * 120.00033 * 269.72684 * 22 21 20 24 24 C 1.38233 * 120.00155 * 179.75850 * 23 22 21 25 25 C 1.38234 * 120.00137 * 0.48682 * 24 23 22 26 26 C 1.38241 * 119.99868 * 359.78876 * 25 24 23 27 27 C 1.38236 * 119.99680 * 359.95321 * 26 25 24 28 28 C 1.47851 * 108.56563 * 0.99292 * 20 19 18 29 29 H 1.09002 * 109.47267 * 305.10388 * 1 2 3 30 30 H 1.08997 * 109.47240 * 65.10486 * 1 2 3 31 31 H 1.09002 * 109.47172 * 185.10431 * 1 2 3 32 32 H 1.09007 * 109.46626 * 240.00490 * 2 1 3 33 33 H 1.08994 * 109.47374 * 120.00582 * 2 1 3 34 34 H 0.97005 * 119.99885 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.47193 * 307.90710 * 14 13 3 36 36 H 1.08997 * 109.47093 * 67.90142 * 14 13 3 37 37 H 1.09004 * 109.46571 * 290.84125 * 15 14 13 38 38 H 1.08999 * 109.46690 * 50.83712 * 15 14 13 39 39 H 1.08997 * 109.47364 * 170.83770 * 15 14 13 40 40 H 1.08992 * 110.70749 * 87.86507 * 18 16 13 41 41 H 1.09007 * 110.85048 * 324.70311 * 18 16 13 42 42 H 1.08995 * 109.88819 * 262.87756 * 19 18 16 43 43 H 1.09000 * 110.01989 * 141.76196 * 19 18 16 44 44 H 1.09003 * 109.46946 * 169.15977 * 21 20 19 45 45 H 1.09000 * 109.47695 * 289.15423 * 21 20 19 46 46 H 1.07998 * 120.00146 * 359.97438 * 23 22 21 47 47 H 1.08007 * 120.00243 * 180.24971 * 24 23 22 48 48 H 1.08000 * 120.00710 * 179.76200 * 25 24 23 49 49 H 1.07993 * 120.00336 * 179.97438 * 26 25 24 50 50 H 1.08000 * 119.99874 * 180.02562 * 27 26 25 51 51 H 1.08993 * 110.37482 * 94.73529 * 28 20 19 52 52 H 1.09008 * 110.36946 * 217.07551 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6693 1.9588 0.8856 5 6 3.5469 1.4425 0.0124 6 1 4.0938 1.8499 -0.8250 7 6 4.2275 0.9222 1.0928 8 7 3.5615 0.4264 2.1127 9 14 6.0954 0.9216 1.1078 10 1 6.5859 2.1817 1.7215 11 1 6.5837 -0.2368 1.8984 12 1 6.6016 0.8192 -0.2845 13 7 1.5602 2.1315 -1.2053 14 6 1.9027 3.5595 -1.1669 15 6 1.2217 4.2790 -2.3329 16 6 2.0879 1.4962 -2.4202 17 1 2.2674 0.4336 -2.2567 18 6 3.3774 2.2096 -2.9052 19 6 3.3879 1.9165 -4.4202 20 7 2.0013 1.6075 -4.8150 21 6 1.5450 2.5073 -5.8827 22 6 2.5783 2.5510 -6.9788 23 6 3.5879 3.4943 -6.9397 24 6 4.5386 3.5312 -7.9425 25 6 4.4739 2.6312 -8.9897 26 6 3.4610 1.6915 -9.0318 27 6 2.5133 1.6512 -8.0262 28 6 1.1359 1.7198 -3.6215 29 1 -0.3634 0.5910 0.8407 30 1 -0.3633 0.4326 -0.9321 31 1 -0.3633 -1.0236 0.0914 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.0403 0.0607 2.8730 35 1 1.5613 3.9898 -0.2253 36 1 2.9832 3.6764 -1.2490 37 1 1.6793 3.9644 -3.2709 38 1 0.1608 4.0288 -2.3444 39 1 1.3397 5.3560 -2.2142 40 1 4.2577 1.7835 -2.4241 41 1 3.3202 3.2823 -2.7205 42 1 4.0319 1.0621 -4.6282 43 1 3.7431 2.7902 -4.9668 44 1 0.6013 2.1416 -6.2874 45 1 1.4026 3.5091 -5.4775 46 1 3.6360 4.2003 -6.1238 47 1 5.3298 4.2657 -7.9098 48 1 5.2145 2.6625 -9.7752 49 1 3.4101 0.9886 -9.8501 50 1 1.7222 0.9167 -8.0589 51 1 0.6868 2.7115 -3.5704 52 1 0.3621 0.9523 -3.6404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:38 Heat of formation + Delta-G solvation = 59.113179 kcal Electronic energy + Delta-G solvation = -28210.106920 eV Core-core repulsion = 24789.302296 eV Total energy + Delta-G solvation = -3420.804624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09299 -38.93213 -36.40443 -33.53094 -32.17146 -31.58060 -31.02698 -29.84707 -28.95988 -28.00698 -25.85985 -25.16887 -23.06590 -22.71138 -21.74967 -21.35940 -20.41974 -19.85123 -18.42022 -16.74372 -16.57991 -16.26277 -15.52197 -15.30147 -15.19692 -14.62293 -14.28612 -13.85307 -13.48816 -13.45843 -13.26502 -13.05435 -12.78510 -12.67684 -12.44768 -12.22644 -12.14252 -11.73379 -11.52199 -11.42078 -11.31740 -11.13022 -11.02338 -10.87827 -10.86073 -10.73208 -10.56141 -10.38879 -10.28401 -9.98390 -9.74091 -9.57104 -9.20993 -8.95447 -8.88759 -8.79226 -8.35964 -7.92490 -7.14576 -5.99077 -4.10084 1.26084 1.33343 3.25749 3.33803 3.35780 3.66453 4.38665 4.40026 4.68767 4.77879 4.91514 4.98918 5.05195 5.19438 5.27427 5.31116 5.41942 5.54392 5.57149 5.65545 5.68296 5.69627 5.83371 5.92092 5.94374 5.96751 5.98073 6.10844 6.16147 6.33801 6.34383 6.37607 6.42379 6.44970 6.47457 6.49416 6.58563 6.61018 6.66701 6.74314 6.83970 6.91659 6.92999 7.12929 7.18958 7.25752 7.34831 7.40197 7.64719 7.76898 7.99932 8.17028 8.33512 8.47675 9.00729 9.57579 11.02388 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.003865 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.852471 B = 7242.014096 C = 8079.138392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 C 0.215 3.785 4 H 0.040 0.960 5 C -0.549 4.549 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.882 3.118 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.524 5.524 14 C 0.054 3.946 15 C -0.156 4.156 16 C 0.096 3.904 17 H 0.093 0.907 18 C -0.180 4.180 19 C 0.034 3.966 20 N -0.522 5.522 21 C 0.088 3.912 22 C -0.075 4.075 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.100 4.100 28 C 0.031 3.969 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.024 0.976 32 H 0.035 0.965 33 H 0.083 0.917 34 H 0.260 0.740 35 H 0.061 0.939 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.123 0.877 51 H 0.066 0.934 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.541 5.288 -17.452 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C 0.108 3.892 4 H 0.058 0.942 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.525 5.525 9 Si 0.710 3.290 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.246 5.246 14 C -0.074 4.074 15 C -0.213 4.213 16 C -0.014 4.014 17 H 0.111 0.889 18 C -0.219 4.219 19 C -0.094 4.094 20 N -0.246 5.246 21 C -0.040 4.040 22 C -0.075 4.075 23 C -0.131 4.131 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.118 4.118 28 C -0.097 4.097 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.059 0.941 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.141 0.859 51 H 0.084 0.916 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.089 4.650 -17.442 18.313 hybrid contribution 2.188 0.773 0.471 2.368 sum -0.902 5.424 -16.971 17.839 Atomic orbital electron populations 1.21688 0.98731 0.98318 1.00644 1.21590 0.92289 0.99232 1.01499 1.19302 0.92510 0.90650 0.86712 0.94197 1.22108 0.92587 1.40167 1.03955 0.91333 1.24916 0.97722 0.95129 0.95575 1.69910 1.35039 1.40249 1.07254 0.86763 0.86676 0.77545 0.78020 1.20854 1.21255 1.20034 1.62481 1.57822 1.01296 1.03032 1.21940 0.98459 0.89802 0.97247 1.22226 1.01208 0.98743 0.99108 1.22546 0.89896 0.99652 0.89284 0.88907 1.23784 1.01571 1.02106 0.94435 1.22985 0.90291 1.00287 0.95841 1.63749 1.02754 1.49644 1.08481 1.21237 0.96269 0.95429 0.91067 1.19851 0.96482 0.95494 0.95723 1.21091 0.94877 0.98827 0.98328 1.21100 0.98955 0.99345 0.94660 1.21115 0.98570 0.96043 0.98551 1.21139 0.95263 0.98841 0.98909 1.21041 0.99076 0.98032 0.93659 1.23573 0.95996 1.01614 0.88503 0.94215 0.93382 0.95685 0.94625 0.89872 0.93004 0.92016 0.93620 0.92782 0.92254 0.93761 0.89851 0.90390 0.91431 0.92469 0.90208 0.94118 0.86220 0.86279 0.86409 0.86262 0.85928 0.91563 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.69 37.16 0.36 -2.35 16 2 C -0.11 -2.47 5.08 -26.73 -0.14 -2.61 16 3 C 0.21 5.04 1.69 -68.87 -0.12 4.92 16 4 H 0.04 1.07 8.03 -51.92 -0.42 0.65 16 5 C -0.55 -13.96 7.20 -34.44 -0.25 -14.21 16 6 H 0.07 1.71 3.77 -52.49 -0.20 1.51 16 7 C 0.07 1.83 5.32 -17.82 -0.09 1.74 16 8 N -0.89 -24.57 11.62 55.43 0.64 -23.93 16 9 Si 0.88 20.83 29.54 -169.99 -5.02 15.81 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.52 -10.32 3.88 -217.56 -0.84 -11.16 16 14 C 0.05 0.98 4.82 -3.82 -0.02 0.97 16 15 C -0.16 -2.29 7.96 37.16 0.30 -1.99 16 16 C 0.10 1.78 2.39 -65.57 -0.16 1.62 16 17 H 0.09 1.96 5.69 -51.93 -0.30 1.67 16 18 C -0.18 -3.16 4.18 -24.90 -0.10 -3.27 16 19 C 0.03 0.52 6.20 -2.83 -0.02 0.50 16 20 N -0.52 -7.67 5.31 -232.69 -1.24 -8.91 16 21 C 0.09 1.09 5.26 -4.98 -0.03 1.06 16 22 C -0.08 -0.90 4.63 -104.63 -0.48 -1.38 16 23 C -0.11 -1.29 7.80 -39.59 -0.31 -1.60 16 24 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 25 C -0.12 -1.23 10.05 -39.58 -0.40 -1.62 16 26 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 27 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 28 C 0.03 0.48 5.77 -2.30 -0.01 0.47 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.91 7.78 -51.93 -0.40 0.50 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.82 6.09 -51.92 -0.32 0.50 16 33 H 0.08 2.15 6.38 -51.93 -0.33 1.82 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.06 1.18 8.02 -51.93 -0.42 0.76 16 36 H 0.05 0.90 5.07 -51.93 -0.26 0.63 16 37 H 0.05 0.78 4.18 -51.93 -0.22 0.56 16 38 H 0.06 0.87 7.53 -51.93 -0.39 0.47 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 1.67 6.15 -51.93 -0.32 1.35 16 41 H 0.08 1.34 4.10 -51.92 -0.21 1.13 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.81 4.17 -51.93 -0.22 0.59 16 44 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 45 H 0.04 0.50 7.28 -51.93 -0.38 0.12 16 46 H 0.12 1.30 7.24 -52.49 -0.38 0.92 16 47 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 50 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 51 H 0.07 1.00 3.64 -51.93 -0.19 0.81 16 52 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 LS Contribution 373.96 15.07 5.64 5.64 Total: -1.00 -26.58 373.96 -11.77 -38.35 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -8.31 Total: 6.76 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -2.65 Total: -22.56 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -1.44 Total: -44.00 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -26.58 -11.77 -38.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.465 kcal (2) G-P(sol) polarization free energy of solvation -26.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds