Wall clock time and date at job start Tue Mar 31 2020 11:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47147 * 2 1 4 4 H 1.09008 * 109.46546 * 59.50404 * 3 2 1 5 5 C 1.50699 * 109.47100 * 179.49870 * 3 2 1 6 6 H 1.08000 * 119.99688 * 115.99303 * 5 3 2 7 7 C 1.37875 * 120.00250 * 295.99905 * 5 3 2 8 8 N 1.31515 * 119.99892 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00005 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47305 * 90.00065 * 9 7 5 11 11 H 1.48508 * 109.47014 * 209.99711 * 9 7 5 12 12 H 1.48500 * 109.46981 * 329.99477 * 9 7 5 13 13 N 1.46891 * 109.47352 * 299.50301 * 3 2 1 14 14 C 1.46902 * 111.00066 * 173.62685 * 13 3 2 15 15 C 1.53005 * 109.47500 * 187.90831 * 14 13 3 16 16 C 1.46897 * 111.00245 * 297.57957 * 13 3 2 17 17 H 1.08999 * 110.90269 * 29.10490 * 16 13 3 18 18 C 1.55146 * 110.99157 * 265.24004 * 16 13 3 19 19 C 1.54319 * 103.01911 * 206.25315 * 18 16 13 20 20 N 1.47445 * 107.23390 * 22.28124 * 19 18 16 21 21 C 1.46897 * 110.99715 * 123.25565 * 20 19 18 22 22 C 1.50698 * 109.47494 * 49.16021 * 21 20 19 23 23 C 1.38230 * 120.00033 * 269.72684 * 22 21 20 24 24 C 1.38233 * 120.00155 * 179.75850 * 23 22 21 25 25 C 1.38234 * 120.00137 * 0.48682 * 24 23 22 26 26 C 1.38241 * 119.99868 * 359.78876 * 25 24 23 27 27 C 1.38236 * 119.99680 * 359.95321 * 26 25 24 28 28 C 1.47851 * 108.56563 * 0.99292 * 20 19 18 29 29 H 1.09002 * 109.47267 * 305.10388 * 1 2 3 30 30 H 1.08997 * 109.47240 * 65.10486 * 1 2 3 31 31 H 1.09002 * 109.47172 * 185.10431 * 1 2 3 32 32 H 1.09007 * 109.46626 * 240.00490 * 2 1 3 33 33 H 1.08994 * 109.47374 * 120.00582 * 2 1 3 34 34 H 0.97005 * 119.99885 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.47193 * 307.90710 * 14 13 3 36 36 H 1.08997 * 109.47093 * 67.90142 * 14 13 3 37 37 H 1.09004 * 109.46571 * 290.84125 * 15 14 13 38 38 H 1.08999 * 109.46690 * 50.83712 * 15 14 13 39 39 H 1.08997 * 109.47364 * 170.83770 * 15 14 13 40 40 H 1.08992 * 110.70749 * 87.86507 * 18 16 13 41 41 H 1.09007 * 110.85048 * 324.70311 * 18 16 13 42 42 H 1.08995 * 109.88819 * 262.87756 * 19 18 16 43 43 H 1.09000 * 110.01989 * 141.76196 * 19 18 16 44 44 H 1.09003 * 109.46946 * 169.15977 * 21 20 19 45 45 H 1.09000 * 109.47695 * 289.15423 * 21 20 19 46 46 H 1.07998 * 120.00146 * 359.97438 * 23 22 21 47 47 H 1.08007 * 120.00243 * 180.24971 * 24 23 22 48 48 H 1.08000 * 120.00710 * 179.76200 * 25 24 23 49 49 H 1.07993 * 120.00336 * 179.97438 * 26 25 24 50 50 H 1.08000 * 119.99874 * 180.02562 * 27 26 25 51 51 H 1.08993 * 110.37482 * 94.73529 * 28 20 19 52 52 H 1.09008 * 110.36946 * 217.07551 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6693 1.9588 0.8856 5 6 3.5469 1.4425 0.0124 6 1 4.0938 1.8499 -0.8250 7 6 4.2275 0.9222 1.0928 8 7 3.5615 0.4264 2.1127 9 14 6.0954 0.9216 1.1078 10 1 6.5859 2.1817 1.7215 11 1 6.5837 -0.2368 1.8984 12 1 6.6016 0.8192 -0.2845 13 7 1.5602 2.1315 -1.2053 14 6 1.9027 3.5595 -1.1669 15 6 1.2217 4.2790 -2.3329 16 6 2.0879 1.4962 -2.4202 17 1 2.2674 0.4336 -2.2567 18 6 3.3774 2.2096 -2.9052 19 6 3.3879 1.9165 -4.4202 20 7 2.0013 1.6075 -4.8150 21 6 1.5450 2.5073 -5.8827 22 6 2.5783 2.5510 -6.9788 23 6 3.5879 3.4943 -6.9397 24 6 4.5386 3.5312 -7.9425 25 6 4.4739 2.6312 -8.9897 26 6 3.4610 1.6915 -9.0318 27 6 2.5133 1.6512 -8.0262 28 6 1.1359 1.7198 -3.6215 29 1 -0.3634 0.5910 0.8407 30 1 -0.3633 0.4326 -0.9321 31 1 -0.3633 -1.0236 0.0914 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.0403 0.0607 2.8730 35 1 1.5613 3.9898 -0.2253 36 1 2.9832 3.6764 -1.2490 37 1 1.6793 3.9644 -3.2709 38 1 0.1608 4.0288 -2.3444 39 1 1.3397 5.3560 -2.2142 40 1 4.2577 1.7835 -2.4241 41 1 3.3202 3.2823 -2.7205 42 1 4.0319 1.0621 -4.6282 43 1 3.7431 2.7902 -4.9668 44 1 0.6013 2.1416 -6.2874 45 1 1.4026 3.5091 -5.4775 46 1 3.6360 4.2003 -6.1238 47 1 5.3298 4.2657 -7.9098 48 1 5.2145 2.6625 -9.7752 49 1 3.4101 0.9886 -9.8501 50 1 1.7222 0.9167 -8.0589 51 1 0.6868 2.7115 -3.5704 52 1 0.3621 0.9523 -3.6404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:37 Heat of formation + Delta-G solvation = 45.285798 kcal Electronic energy + Delta-G solvation = -28210.706520 eV Core-core repulsion = 24789.302296 eV Total energy + Delta-G solvation = -3421.404224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.31887 -39.99100 -37.81452 -35.19461 -33.55816 -33.19374 -31.81138 -31.09517 -30.39242 -29.42466 -27.63183 -26.27344 -24.75519 -23.62011 -23.06651 -22.41890 -21.96868 -21.18664 -19.98233 -18.45276 -17.79919 -17.48570 -16.91697 -16.57766 -16.19075 -15.95617 -15.75177 -15.18274 -14.95937 -14.58315 -14.46686 -14.37575 -14.21080 -14.08231 -13.49385 -13.44067 -13.34791 -13.16528 -13.07603 -12.98880 -12.82787 -12.69461 -12.57735 -12.36437 -12.21323 -12.05738 -11.85602 -11.78219 -11.63140 -11.55491 -11.46547 -11.36095 -10.84143 -10.72150 -10.40001 -9.75179 -9.63848 -9.09130 -8.86070 -8.00679 -6.19638 0.45683 0.54644 1.34571 1.37899 1.44827 2.40851 2.80200 3.20048 3.21762 3.48387 3.84283 3.89764 3.98648 4.17432 4.18264 4.21386 4.31725 4.33415 4.41605 4.49395 4.55765 4.60575 4.65408 4.68154 4.73703 4.75279 4.79033 4.81331 4.83331 4.93234 5.01043 5.09186 5.14855 5.16231 5.19638 5.20632 5.21570 5.30954 5.38079 5.45086 5.52878 5.58589 5.59365 5.66254 5.70659 5.75208 5.82222 6.02464 6.09430 6.15330 6.23829 6.27642 6.47741 6.74640 7.02776 7.51073 8.96405 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.003865 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.852471 B = 7242.014096 C = 8079.138392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 C 0.222 3.778 4 H 0.003 0.997 5 C -0.551 4.551 6 H 0.072 0.928 7 C 0.021 3.979 8 N -0.915 5.915 9 Si 0.936 3.064 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.518 5.518 14 C 0.052 3.948 15 C -0.142 4.142 16 C 0.095 3.905 17 H 0.063 0.937 18 C -0.174 4.174 19 C 0.045 3.955 20 N -0.526 5.526 21 C 0.090 3.910 22 C -0.090 4.090 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.128 4.128 26 C -0.129 4.129 27 C -0.112 4.112 28 C 0.044 3.956 29 H 0.033 0.967 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.258 0.742 35 H 0.048 0.952 36 H 0.030 0.970 37 H 0.059 0.941 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.084 0.916 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.122 0.878 47 H 0.136 0.864 48 H 0.140 0.860 49 H 0.140 0.860 50 H 0.129 0.871 51 H 0.079 0.921 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.676 6.292 -20.167 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.140 4.140 3 C 0.114 3.886 4 H 0.021 0.979 5 C -0.590 4.590 6 H 0.090 0.910 7 C -0.178 4.178 8 N -0.555 5.555 9 Si 0.763 3.237 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.241 5.241 14 C -0.076 4.076 15 C -0.199 4.199 16 C -0.015 4.015 17 H 0.081 0.919 18 C -0.213 4.213 19 C -0.083 4.083 20 N -0.251 5.251 21 C -0.037 4.037 22 C -0.091 4.091 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.130 4.130 28 C -0.084 4.084 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.109 0.891 45 H 0.065 0.935 46 H 0.140 0.860 47 H 0.154 0.846 48 H 0.158 0.842 49 H 0.158 0.842 50 H 0.147 0.853 51 H 0.097 0.903 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.227 5.665 -20.180 21.207 hybrid contribution 2.247 0.473 1.250 2.615 sum -0.979 6.138 -18.930 19.924 Atomic orbital electron populations 1.21542 0.96080 0.99478 1.00969 1.21415 0.94599 0.98376 0.99576 1.19033 0.91463 0.90926 0.87131 0.97867 1.22466 0.93923 1.38980 1.03666 0.91044 1.25579 1.01312 0.95348 0.95595 1.70039 1.36251 1.41447 1.07782 0.85899 0.82493 0.77380 0.77920 1.20520 1.21346 1.19685 1.62457 1.57491 1.01958 1.02146 1.21998 0.97947 0.89097 0.98539 1.22094 1.01002 0.99559 0.97290 1.22480 0.91470 0.97818 0.89703 0.91914 1.23652 0.99710 1.01996 0.95925 1.22838 0.90855 1.00474 0.94135 1.63707 1.02036 1.50904 1.08432 1.21276 0.96930 0.95170 0.90368 1.19872 0.96837 0.96333 0.96013 1.21221 0.95242 0.99032 0.98971 1.21384 0.99104 0.99831 0.94488 1.21459 0.98828 0.95452 0.98870 1.21445 0.94870 0.99183 0.99149 1.21236 0.99730 0.98156 0.93926 1.23413 0.95284 1.02314 0.87355 0.94779 0.92182 0.93931 0.95074 0.93144 0.93285 0.93315 0.95175 0.92209 0.91594 0.91574 0.92879 0.89734 0.92755 0.90721 0.89100 0.93515 0.85980 0.84606 0.84170 0.84246 0.85334 0.90279 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 9.69 71.98 0.70 -4.18 16 2 C -0.10 -4.79 5.08 30.59 0.16 -4.63 16 3 C 0.22 10.78 1.69 44.17 0.07 10.85 16 4 H 0.00 0.19 8.03 -2.38 -0.02 0.17 16 5 C -0.55 -28.89 7.20 25.60 0.18 -28.70 16 6 H 0.07 3.66 3.77 -2.91 -0.01 3.65 16 7 C 0.02 1.15 5.32 84.65 0.45 1.60 16 8 N -0.92 -52.57 11.62 21.45 0.25 -52.32 16 9 Si 0.94 43.67 29.54 68.60 2.03 45.70 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.52 -20.54 3.88 -842.23 -3.27 -23.80 16 14 C 0.05 1.90 4.82 86.30 0.42 2.31 16 15 C -0.14 -3.84 7.96 71.98 0.57 -3.27 16 16 C 0.10 3.50 2.39 46.30 0.11 3.61 16 17 H 0.06 2.71 5.69 -2.39 -0.01 2.70 16 18 C -0.17 -6.07 4.18 31.78 0.13 -5.94 16 19 C 0.04 1.34 6.20 86.65 0.54 1.88 16 20 N -0.53 -14.56 5.31 -890.09 -4.73 -19.29 16 21 C 0.09 2.00 5.26 85.56 0.45 2.45 16 22 C -0.09 -1.96 4.63 -19.87 -0.09 -2.05 16 23 C -0.13 -2.61 7.80 22.27 0.17 -2.44 16 24 C -0.13 -2.38 10.05 22.27 0.22 -2.16 16 25 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 26 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 27 C -0.11 -2.27 9.70 22.27 0.22 -2.05 16 28 C 0.04 1.30 5.77 86.77 0.50 1.80 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.06 2.21 7.78 -2.39 -0.02 2.19 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.03 1.47 6.09 -2.38 -0.01 1.45 16 33 H 0.05 2.71 6.38 -2.39 -0.02 2.70 16 34 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 35 H 0.05 1.87 8.02 -2.38 -0.02 1.85 16 36 H 0.03 1.19 5.07 -2.39 -0.01 1.18 16 37 H 0.06 1.55 4.18 -2.39 -0.01 1.54 16 38 H 0.07 1.73 7.53 -2.39 -0.02 1.71 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 2.17 6.15 -2.39 -0.01 2.16 16 41 H 0.08 2.84 4.10 -2.38 -0.01 2.83 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 1.98 4.17 -2.39 -0.01 1.97 16 44 H 0.09 1.83 8.09 -2.39 -0.02 1.81 16 45 H 0.05 1.00 7.28 -2.39 -0.02 0.98 16 46 H 0.12 2.39 7.24 -2.91 -0.02 2.37 16 47 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 48 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 49 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 50 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 51 H 0.08 2.16 3.64 -2.39 -0.01 2.15 16 52 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -58.73 373.96 0.44 -58.29 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.91 Total: 26.33 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 5.25 Total: -34.90 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -7.74 Total: -95.42 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -58.73 0.44 -58.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.576 kcal (2) G-P(sol) polarization free energy of solvation -58.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds