Wall clock time and date at job start Tue Mar 31 2020 11:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47356 * 2 1 4 4 H 1.09000 * 109.46781 * 305.00004 * 3 2 1 5 5 C 1.50700 * 109.47040 * 184.99950 * 3 2 1 6 6 H 1.08002 * 119.99930 * 245.54419 * 5 3 2 7 7 C 1.37879 * 120.00110 * 65.55466 * 5 3 2 8 8 N 1.31515 * 119.99948 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00048 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47256 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47482 * 119.99398 * 9 7 5 12 12 H 1.48500 * 109.47330 * 239.99314 * 9 7 5 13 13 N 1.46896 * 109.47099 * 64.99962 * 3 2 1 14 14 C 1.46953 * 111.00152 * 71.09347 * 13 3 2 15 15 C 1.53052 * 109.36708 * 183.19070 * 14 13 3 16 16 H 1.09000 * 109.49011 * 61.55920 * 15 14 13 17 17 C 1.52999 * 109.49276 * 181.63251 * 15 14 13 18 18 N 1.46958 * 109.36230 * 301.59752 * 15 14 13 19 19 C 1.46900 * 111.00527 * 183.18714 * 18 15 14 20 20 C 1.50696 * 109.46798 * 302.24917 * 19 18 15 21 21 C 1.38238 * 120.00173 * 269.71927 * 20 19 18 22 22 C 1.38236 * 120.00043 * 179.79005 * 21 20 19 23 23 C 1.38234 * 120.00044 * 0.44202 * 22 21 20 24 24 C 1.38236 * 119.99998 * 359.81158 * 23 22 21 25 25 C 1.38233 * 120.00198 * 359.97438 * 24 23 22 26 26 C 1.46963 * 110.87993 * 59.31993 * 18 15 14 27 27 C 1.46958 * 111.00025 * 194.89267 * 13 3 2 28 28 H 1.08999 * 109.49125 * 56.84254 * 27 13 3 29 29 C 1.52995 * 109.48929 * 296.77880 * 27 13 3 30 30 H 1.08996 * 109.46755 * 300.00529 * 1 2 3 31 31 H 1.08997 * 109.46654 * 60.00081 * 1 2 3 32 32 H 1.08994 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47354 * 239.99931 * 2 1 3 34 34 H 1.09005 * 109.47429 * 119.99657 * 2 1 3 35 35 H 0.97000 * 120.00077 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.49020 * 303.15359 * 14 13 3 37 37 H 1.08998 * 109.49002 * 63.22338 * 14 13 3 38 38 H 1.08995 * 109.47230 * 179.88996 * 17 15 14 39 39 H 1.08996 * 109.46670 * 299.88854 * 17 15 14 40 40 H 1.09003 * 109.46936 * 59.88568 * 17 15 14 41 41 H 1.09000 * 109.46742 * 62.24374 * 19 18 15 42 42 H 1.08993 * 109.47355 * 182.24541 * 19 18 15 43 43 H 1.08000 * 119.99673 * 0.02562 * 21 20 19 44 44 H 1.08006 * 119.99658 * 180.27958 * 22 21 20 45 45 H 1.08001 * 119.99593 * 179.83608 * 23 22 21 46 46 H 1.08001 * 119.99897 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.00186 * 179.97438 * 25 24 23 48 48 H 1.08993 * 109.48966 * 60.64946 * 26 18 15 49 49 H 1.09001 * 109.48749 * 180.69212 * 26 18 15 50 50 H 1.09006 * 109.47117 * 308.06239 * 29 27 13 51 51 H 1.09002 * 109.47013 * 68.06357 * 29 27 13 52 52 H 1.09004 * 109.47764 * 188.06400 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1506 1.8072 0.6912 7 6 4.1391 0.9827 -1.2777 8 7 3.3980 0.5404 -2.2701 9 14 6.0007 0.9855 -1.4314 10 1 6.5995 1.5292 -0.1859 11 1 6.4818 -0.4029 -1.6473 12 1 6.4010 1.8327 -2.5835 13 7 1.6515 2.0993 1.2552 14 6 2.4224 1.5683 2.3880 15 6 1.9335 2.2192 3.6841 16 1 0.8833 1.9731 3.8411 17 6 2.7616 1.6988 4.8607 18 7 2.0858 3.6775 3.5846 19 6 1.6971 4.3344 4.8397 20 6 0.2728 3.9741 5.1751 21 6 -0.7659 4.7628 4.7168 22 6 -2.0727 4.4299 5.0208 23 6 -2.3403 3.3135 5.7908 24 6 -1.3013 2.5277 6.2535 25 6 0.0052 2.8581 5.9458 26 6 1.3148 4.2085 2.4517 27 6 1.8037 3.5576 1.1556 28 1 1.2138 3.9284 0.3175 29 6 3.2778 3.9030 0.9353 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8181 0.2154 -3.0817 36 1 2.2835 0.4889 2.4484 37 1 3.4796 1.7919 2.2451 38 1 2.4145 2.1639 5.7832 39 1 2.6485 0.6172 4.9342 40 1 3.8118 1.9443 4.7026 41 1 2.3548 4.0015 5.6427 42 1 1.7814 5.4150 4.7255 43 1 -0.5566 5.6370 4.1181 44 1 -2.8844 5.0436 4.6590 45 1 -3.3611 3.0549 6.0305 46 1 -1.5104 1.6557 6.8553 47 1 0.8170 2.2444 6.3076 48 1 0.2576 3.9850 2.5946 49 1 1.4534 5.2880 2.3916 50 1 3.8838 3.4120 1.6968 51 1 3.5875 3.5607 -0.0521 52 1 3.4123 4.9825 1.0043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:18 Heat of formation + Delta-G solvation = 44.940292 kcal Electronic energy + Delta-G solvation = -28892.109553 eV Core-core repulsion = 25470.690347 eV Total energy + Delta-G solvation = -3421.419206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.20530 -38.62881 -36.13139 -33.24422 -32.50904 -31.61714 -30.88317 -30.50690 -28.35082 -27.26627 -25.75735 -25.36698 -23.55950 -22.65106 -22.37926 -21.63703 -20.44727 -19.26183 -18.00292 -16.82802 -16.26817 -15.75812 -15.54081 -15.22715 -14.84888 -14.50020 -14.32831 -14.02348 -13.53169 -13.44571 -13.32759 -12.81809 -12.76548 -12.52263 -12.33578 -12.02226 -11.93085 -11.74784 -11.57197 -11.46314 -11.20887 -11.08635 -11.03913 -10.87672 -10.78899 -10.65202 -10.58986 -10.37280 -10.08792 -9.95599 -9.52438 -9.47053 -9.33522 -8.89835 -8.82901 -8.70620 -8.31704 -7.92816 -7.01311 -5.95230 -4.01644 1.34726 1.40504 3.28325 3.37689 3.41104 3.76823 4.30565 4.43992 4.80453 4.85011 4.98212 5.04254 5.09627 5.24724 5.29710 5.38420 5.47741 5.53876 5.58673 5.73160 5.81167 5.86718 5.96870 5.99384 6.02206 6.04393 6.12897 6.21308 6.28068 6.39268 6.43266 6.46835 6.47088 6.48684 6.53311 6.61441 6.65197 6.68135 6.79779 6.86346 7.00670 7.10011 7.17053 7.20692 7.40750 7.41341 7.46174 7.57115 7.65679 7.81159 8.01837 8.21499 8.38049 8.54176 9.05410 9.60985 11.06383 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.004189 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.085373 B = 6682.932871 C = 7104.599810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.535 4.535 6 H 0.070 0.930 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.881 3.119 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.531 5.531 14 C 0.067 3.933 15 C 0.079 3.921 16 H 0.047 0.953 17 C -0.149 4.149 18 N -0.514 5.514 19 C 0.087 3.913 20 C -0.111 4.111 21 C -0.108 4.108 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.112 4.112 26 C 0.062 3.938 27 C 0.093 3.907 28 H 0.069 0.931 29 C -0.169 4.169 30 H 0.047 0.953 31 H 0.038 0.962 32 H 0.023 0.977 33 H 0.080 0.920 34 H 0.031 0.969 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.118 0.882 47 H 0.125 0.875 48 H 0.038 0.962 49 H 0.065 0.935 50 H 0.059 0.941 51 H 0.086 0.914 52 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.398 6.081 15.019 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.057 0.943 5 C -0.574 4.574 6 H 0.088 0.912 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.709 3.291 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.254 5.254 14 C -0.062 4.062 15 C -0.030 4.030 16 H 0.065 0.935 17 C -0.207 4.207 18 N -0.237 5.237 19 C -0.041 4.041 20 C -0.113 4.113 21 C -0.127 4.127 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.130 4.130 26 C -0.067 4.067 27 C -0.017 4.017 28 H 0.087 0.913 29 C -0.227 4.227 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.142 0.858 48 H 0.057 0.943 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.105 0.895 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.362 5.996 14.792 17.577 hybrid contribution 0.940 -0.095 -0.273 0.983 sum -6.422 5.901 14.519 16.937 Atomic orbital electron populations 1.21697 0.98904 0.98317 1.00549 1.21502 0.92228 0.99386 1.01057 1.19251 0.93315 0.90868 0.85792 0.94311 1.22015 0.92832 1.41379 1.01197 0.91223 1.24908 0.97393 0.95335 0.96019 1.69932 1.34573 1.42577 1.05526 0.86716 0.86776 0.77578 0.78022 1.19825 1.21198 1.21206 1.62735 1.54501 1.02430 1.05746 1.22035 0.97643 0.97971 0.88507 1.21798 0.98319 0.86749 0.96095 0.93465 1.21980 1.00960 1.00521 0.97232 1.62570 1.54309 1.04921 1.01879 1.21321 0.89773 0.99540 0.93483 1.20729 0.97521 0.95681 0.97383 1.21064 0.92521 0.99602 0.99509 1.21112 0.96616 0.97501 0.98757 1.21100 0.98901 0.95605 0.98658 1.21127 0.92972 0.99561 1.00370 1.21262 0.96847 0.96828 0.98098 1.22277 0.95539 0.97961 0.90877 1.21477 0.95921 0.89714 0.94565 0.91300 1.22620 0.97410 0.98154 1.04504 0.93373 0.94292 0.95744 0.90121 0.95009 0.93140 0.91476 0.92654 0.92787 0.92390 0.91949 0.89947 0.90471 0.86389 0.86411 0.86512 0.86403 0.85774 0.94348 0.91709 0.92243 0.89513 0.95810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.80 37.16 0.36 -2.44 16 2 C -0.10 -2.40 5.28 -26.73 -0.14 -2.54 16 3 C 0.21 5.08 1.51 -68.87 -0.10 4.97 16 4 H 0.04 1.04 7.93 -51.93 -0.41 0.63 16 5 C -0.54 -13.56 5.05 -34.44 -0.17 -13.74 16 6 H 0.07 1.78 4.19 -52.49 -0.22 1.56 16 7 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -24.62 11.73 55.43 0.65 -23.97 16 9 Si 0.88 20.87 29.54 -169.99 -5.02 15.85 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.53 -10.85 4.08 -219.95 -0.90 -11.74 16 14 C 0.07 1.29 3.90 -3.77 -0.01 1.27 16 15 C 0.08 1.24 1.94 -67.65 -0.13 1.10 16 16 H 0.05 0.80 6.27 -51.93 -0.33 0.48 16 17 C -0.15 -1.96 8.37 37.16 0.31 -1.65 16 18 N -0.51 -7.66 4.19 -227.93 -0.96 -8.61 16 19 C 0.09 1.06 5.17 -4.98 -0.03 1.04 16 20 C -0.11 -1.36 4.01 -104.62 -0.42 -1.78 16 21 C -0.11 -1.29 8.07 -39.58 -0.32 -1.61 16 22 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 23 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 24 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.11 -1.32 7.83 -39.58 -0.31 -1.63 16 26 C 0.06 0.97 4.50 -3.76 -0.02 0.96 16 27 C 0.09 1.76 2.94 -67.66 -0.20 1.56 16 28 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 29 C -0.17 -3.34 7.30 37.16 0.27 -3.07 16 30 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.08 2.10 6.43 -51.93 -0.33 1.77 16 34 H 0.03 0.73 6.49 -51.93 -0.34 0.39 16 35 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 36 H 0.07 1.35 6.47 -51.93 -0.34 1.01 16 37 H 0.06 1.18 4.44 -51.93 -0.23 0.95 16 38 H 0.05 0.61 4.08 -51.93 -0.21 0.40 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.94 6.33 -51.93 -0.33 0.61 16 42 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 43 H 0.12 1.28 8.05 -52.49 -0.42 0.86 16 44 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 46 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.12 1.36 5.39 -52.49 -0.28 1.07 16 48 H 0.04 0.63 6.39 -51.93 -0.33 0.30 16 49 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 50 H 0.06 1.23 5.27 -51.93 -0.27 0.96 16 51 H 0.09 1.98 5.75 -51.93 -0.30 1.68 16 52 H 0.02 0.42 8.13 -51.93 -0.42 -0.01 16 LS Contribution 370.55 15.07 5.58 5.58 Total: -1.00 -26.83 370.55 -11.36 -38.18 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -8.52 Total: 5.88 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -2.20 Total: -21.18 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: -1.20 Total: -44.32 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -26.83 -11.36 -38.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.125 kcal (2) G-P(sol) polarization free energy of solvation -26.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds