Wall clock time and date at job start Tue Mar 31 2020 11:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47356 * 2 1 4 4 H 1.09000 * 109.46781 * 305.00004 * 3 2 1 5 5 C 1.50700 * 109.47040 * 184.99950 * 3 2 1 6 6 H 1.08002 * 119.99930 * 245.54419 * 5 3 2 7 7 C 1.37879 * 120.00110 * 65.55466 * 5 3 2 8 8 N 1.31515 * 119.99948 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00048 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47256 * 359.97438 * 9 7 5 11 11 H 1.48508 * 109.47482 * 119.99398 * 9 7 5 12 12 H 1.48500 * 109.47330 * 239.99314 * 9 7 5 13 13 N 1.46896 * 109.47099 * 64.99962 * 3 2 1 14 14 C 1.46953 * 111.00152 * 71.09347 * 13 3 2 15 15 C 1.53052 * 109.36708 * 183.19070 * 14 13 3 16 16 H 1.09000 * 109.49011 * 61.55920 * 15 14 13 17 17 C 1.52999 * 109.49276 * 181.63251 * 15 14 13 18 18 N 1.46958 * 109.36230 * 301.59752 * 15 14 13 19 19 C 1.46900 * 111.00527 * 183.18714 * 18 15 14 20 20 C 1.50696 * 109.46798 * 302.24917 * 19 18 15 21 21 C 1.38238 * 120.00173 * 269.71927 * 20 19 18 22 22 C 1.38236 * 120.00043 * 179.79005 * 21 20 19 23 23 C 1.38234 * 120.00044 * 0.44202 * 22 21 20 24 24 C 1.38236 * 119.99998 * 359.81158 * 23 22 21 25 25 C 1.38233 * 120.00198 * 359.97438 * 24 23 22 26 26 C 1.46963 * 110.87993 * 59.31993 * 18 15 14 27 27 C 1.46958 * 111.00025 * 194.89267 * 13 3 2 28 28 H 1.08999 * 109.49125 * 56.84254 * 27 13 3 29 29 C 1.52995 * 109.48929 * 296.77880 * 27 13 3 30 30 H 1.08996 * 109.46755 * 300.00529 * 1 2 3 31 31 H 1.08997 * 109.46654 * 60.00081 * 1 2 3 32 32 H 1.08994 * 109.47114 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47354 * 239.99931 * 2 1 3 34 34 H 1.09005 * 109.47429 * 119.99657 * 2 1 3 35 35 H 0.97000 * 120.00077 * 180.02562 * 8 7 5 36 36 H 1.08998 * 109.49020 * 303.15359 * 14 13 3 37 37 H 1.08998 * 109.49002 * 63.22338 * 14 13 3 38 38 H 1.08995 * 109.47230 * 179.88996 * 17 15 14 39 39 H 1.08996 * 109.46670 * 299.88854 * 17 15 14 40 40 H 1.09003 * 109.46936 * 59.88568 * 17 15 14 41 41 H 1.09000 * 109.46742 * 62.24374 * 19 18 15 42 42 H 1.08993 * 109.47355 * 182.24541 * 19 18 15 43 43 H 1.08000 * 119.99673 * 0.02562 * 21 20 19 44 44 H 1.08006 * 119.99658 * 180.27958 * 22 21 20 45 45 H 1.08001 * 119.99593 * 179.83608 * 23 22 21 46 46 H 1.08001 * 119.99897 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.00186 * 179.97438 * 25 24 23 48 48 H 1.08993 * 109.48966 * 60.64946 * 26 18 15 49 49 H 1.09001 * 109.48749 * 180.69212 * 26 18 15 50 50 H 1.09006 * 109.47117 * 308.06239 * 29 27 13 51 51 H 1.09002 * 109.47013 * 68.06357 * 29 27 13 52 52 H 1.09004 * 109.47764 * 188.06400 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1506 1.8072 0.6912 7 6 4.1391 0.9827 -1.2777 8 7 3.3980 0.5404 -2.2701 9 14 6.0007 0.9855 -1.4314 10 1 6.5995 1.5292 -0.1859 11 1 6.4818 -0.4029 -1.6473 12 1 6.4010 1.8327 -2.5835 13 7 1.6515 2.0993 1.2552 14 6 2.4224 1.5683 2.3880 15 6 1.9335 2.2192 3.6841 16 1 0.8833 1.9731 3.8411 17 6 2.7616 1.6988 4.8607 18 7 2.0858 3.6775 3.5846 19 6 1.6971 4.3344 4.8397 20 6 0.2728 3.9741 5.1751 21 6 -0.7659 4.7628 4.7168 22 6 -2.0727 4.4299 5.0208 23 6 -2.3403 3.3135 5.7908 24 6 -1.3013 2.5277 6.2535 25 6 0.0052 2.8581 5.9458 26 6 1.3148 4.2085 2.4517 27 6 1.8037 3.5576 1.1556 28 1 1.2138 3.9284 0.3175 29 6 3.2778 3.9030 0.9353 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 3.8181 0.2154 -3.0817 36 1 2.2835 0.4889 2.4484 37 1 3.4796 1.7919 2.2451 38 1 2.4145 2.1639 5.7832 39 1 2.6485 0.6172 4.9342 40 1 3.8118 1.9443 4.7026 41 1 2.3548 4.0015 5.6427 42 1 1.7814 5.4150 4.7255 43 1 -0.5566 5.6370 4.1181 44 1 -2.8844 5.0436 4.6590 45 1 -3.3611 3.0549 6.0305 46 1 -1.5104 1.6557 6.8553 47 1 0.8170 2.2444 6.3076 48 1 0.2576 3.9850 2.5946 49 1 1.4534 5.2880 2.3916 50 1 3.8838 3.4120 1.6968 51 1 3.5875 3.5607 -0.0521 52 1 3.4123 4.9825 1.0043 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:17 Heat of formation + Delta-G solvation = 31.060613 kcal Electronic energy + Delta-G solvation = -28892.711421 eV Core-core repulsion = 25470.690347 eV Total energy + Delta-G solvation = -3422.021074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39340 -39.82142 -37.53477 -34.90335 -33.90225 -33.33094 -31.83421 -31.62540 -29.77883 -28.89544 -27.19963 -26.83666 -24.88630 -24.32393 -23.37521 -22.73412 -21.73283 -20.92962 -19.47807 -18.40248 -17.50597 -17.19823 -16.69645 -16.57664 -16.08970 -15.82874 -15.69063 -15.32803 -15.05715 -14.90574 -14.53146 -14.29159 -14.15538 -13.65576 -13.51115 -13.50000 -13.35798 -13.15911 -12.96226 -12.80007 -12.75721 -12.69132 -12.49506 -12.32423 -12.25124 -12.01652 -11.99238 -11.80711 -11.73805 -11.49227 -11.28833 -11.18910 -11.01324 -10.70955 -10.36532 -9.72322 -9.59308 -9.12852 -8.77290 -7.97195 -6.10279 0.49856 0.56824 1.36626 1.41289 1.49618 2.44766 2.88213 3.17815 3.24040 3.46010 3.94631 3.96448 4.09988 4.16842 4.22243 4.25736 4.32890 4.47815 4.51069 4.56759 4.61828 4.64557 4.68275 4.73527 4.80995 4.85556 4.88514 4.91199 4.92785 4.99881 5.03178 5.06364 5.15393 5.20729 5.21549 5.28115 5.31288 5.40076 5.41194 5.53898 5.58914 5.63148 5.68527 5.69624 5.73520 5.80746 5.84603 6.05051 6.18824 6.23566 6.26438 6.32203 6.51242 6.77682 7.06204 7.54620 9.00883 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.004189 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.085373 B = 6682.932871 C = 7104.599810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.098 4.098 3 C 0.223 3.777 4 H 0.001 0.999 5 C -0.527 4.527 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.918 5.918 9 Si 0.935 3.065 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.529 5.529 14 C 0.072 3.928 15 C 0.091 3.909 16 H 0.040 0.960 17 C -0.143 4.143 18 N -0.521 5.521 19 C 0.090 3.910 20 C -0.123 4.123 21 C -0.120 4.120 22 C -0.132 4.132 23 C -0.131 4.131 24 C -0.132 4.132 25 C -0.122 4.122 26 C 0.075 3.925 27 C 0.088 3.912 28 H 0.057 0.943 29 C -0.154 4.154 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.257 0.743 36 H 0.054 0.946 37 H 0.033 0.967 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.125 0.875 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.135 0.865 47 H 0.132 0.868 48 H 0.035 0.965 49 H 0.084 0.916 50 H 0.050 0.950 51 H 0.050 0.950 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.913 6.838 17.439 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.137 4.137 3 C 0.115 3.885 4 H 0.019 0.981 5 C -0.567 4.567 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.558 5.558 9 Si 0.763 3.237 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.252 5.252 14 C -0.057 4.057 15 C -0.018 4.018 16 H 0.058 0.942 17 C -0.201 4.201 18 N -0.244 5.244 19 C -0.037 4.037 20 C -0.124 4.124 21 C -0.139 4.139 22 C -0.150 4.150 23 C -0.149 4.149 24 C -0.150 4.150 25 C -0.141 4.141 26 C -0.053 4.053 27 C -0.022 4.022 28 H 0.075 0.925 29 C -0.212 4.212 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.143 0.857 44 H 0.152 0.848 45 H 0.154 0.846 46 H 0.153 0.847 47 H 0.149 0.851 48 H 0.053 0.947 49 H 0.103 0.897 50 H 0.069 0.931 51 H 0.069 0.931 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.875 6.765 17.237 20.122 hybrid contribution 1.044 -0.291 -0.992 1.469 sum -6.831 6.474 16.245 18.775 Atomic orbital electron populations 1.21539 0.96550 0.99623 1.00383 1.21348 0.94291 0.98574 0.99444 1.18984 0.92226 0.91001 0.86246 0.98104 1.22211 0.93799 1.39901 1.00742 0.91452 1.25530 1.00801 0.95646 0.96067 1.70052 1.35856 1.43961 1.05942 0.85855 0.82748 0.77306 0.77826 1.19409 1.21171 1.21307 1.62684 1.54479 1.03352 1.04673 1.21995 0.96244 0.97632 0.89779 1.21608 0.98056 0.87289 0.94799 0.94223 1.21938 1.00082 1.01036 0.97014 1.62541 1.54443 1.04431 1.02952 1.21355 0.90207 0.99960 0.92157 1.20739 0.97394 0.96194 0.98116 1.21253 0.92904 0.99979 0.99769 1.21401 0.96948 0.97909 0.98715 1.21424 0.99974 0.95334 0.98163 1.21423 0.92858 1.00211 1.00462 1.21435 0.97521 0.96879 0.98251 1.22094 0.95179 0.98610 0.89430 1.21562 0.95322 0.88878 0.96390 0.92489 1.22382 0.97716 0.99254 1.01841 0.92780 0.95056 0.93689 0.93187 0.94989 0.93405 0.92732 0.94846 0.90430 0.91838 0.92537 0.88792 0.89282 0.85741 0.84808 0.84576 0.84681 0.85068 0.94660 0.89739 0.93111 0.93140 0.93686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 9.80 71.98 0.71 -4.33 16 2 C -0.10 -4.66 5.28 30.60 0.16 -4.50 16 3 C 0.22 10.91 1.51 44.17 0.07 10.98 16 4 H 0.00 0.06 7.93 -2.39 -0.02 0.04 16 5 C -0.53 -27.49 5.05 25.60 0.13 -27.36 16 6 H 0.07 3.51 4.19 -2.91 -0.01 3.50 16 7 C 0.02 0.99 5.30 84.65 0.45 1.44 16 8 N -0.92 -52.65 11.73 21.45 0.25 -52.40 16 9 Si 0.94 43.73 29.54 68.60 2.03 45.76 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 12 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 13 N -0.53 -21.83 4.08 -849.80 -3.46 -25.29 16 14 C 0.07 2.75 3.90 86.31 0.34 3.09 16 15 C 0.09 2.71 1.94 44.92 0.09 2.80 16 16 H 0.04 1.27 6.27 -2.39 -0.01 1.26 16 17 C -0.14 -3.44 8.37 71.98 0.60 -2.84 16 18 N -0.52 -14.43 4.19 -875.03 -3.67 -18.10 16 19 C 0.09 1.96 5.17 85.56 0.44 2.40 16 20 C -0.12 -2.69 4.01 -19.86 -0.08 -2.77 16 21 C -0.12 -2.58 8.07 22.27 0.18 -2.40 16 22 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 23 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 24 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 25 C -0.12 -2.58 7.83 22.27 0.17 -2.41 16 26 C 0.08 2.24 4.50 86.31 0.39 2.63 16 27 C 0.09 3.32 2.94 44.92 0.13 3.45 16 28 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 29 C -0.15 -6.08 7.30 71.98 0.53 -5.55 16 30 H 0.05 2.12 7.75 -2.39 -0.02 2.10 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.05 2.69 6.43 -2.39 -0.02 2.68 16 34 H 0.03 1.48 6.49 -2.38 -0.02 1.47 16 35 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.05 2.19 6.47 -2.39 -0.02 2.18 16 37 H 0.03 1.43 4.44 -2.39 -0.01 1.42 16 38 H 0.08 1.50 4.08 -2.39 -0.01 1.49 16 39 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.09 1.83 6.33 -2.39 -0.02 1.81 16 42 H 0.09 1.74 8.04 -2.39 -0.02 1.72 16 43 H 0.12 2.41 8.05 -2.91 -0.02 2.39 16 44 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 45 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 46 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 47 H 0.13 2.48 5.39 -2.91 -0.02 2.46 16 48 H 0.04 1.10 6.39 -2.39 -0.02 1.08 16 49 H 0.08 2.21 8.11 -2.39 -0.02 2.19 16 50 H 0.05 2.09 5.27 -2.38 -0.01 2.07 16 51 H 0.05 2.35 5.75 -2.39 -0.01 2.34 16 52 H 0.04 1.55 8.13 -2.38 -0.02 1.53 16 Total: -1.00 -59.03 370.55 1.01 -58.01 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.90 Total: 24.45 kcal Atomic # 6 Polarization: -37.40 SS G_CDS: 4.97 Total: -32.43 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -6.88 Total: -95.79 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -59.03 1.01 -58.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.074 kcal (2) G-P(sol) polarization free energy of solvation -59.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds