Wall clock time and date at job start Tue Mar 31 2020 11:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46948 * 2 1 4 4 H 1.08997 * 109.46845 * 54.99946 * 3 2 1 5 5 C 1.50699 * 109.47000 * 174.99941 * 3 2 1 6 6 H 1.07993 * 120.00237 * 120.00159 * 5 3 2 7 7 C 1.37880 * 119.99882 * 300.00152 * 5 3 2 8 8 N 1.31519 * 120.00194 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 120.00305 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46742 * 89.99897 * 9 7 5 11 11 H 1.48497 * 109.47149 * 210.00066 * 9 7 5 12 12 H 1.48496 * 109.46880 * 330.00572 * 9 7 5 13 13 N 1.46896 * 109.46999 * 294.99978 * 3 2 1 14 14 C 1.46959 * 111.00014 * 298.95103 * 13 3 2 15 15 C 1.53045 * 109.36290 * 176.81298 * 14 13 3 16 16 H 1.08997 * 109.49000 * 178.37001 * 15 14 13 17 17 C 1.53004 * 109.50925 * 298.42630 * 15 14 13 18 18 N 1.46956 * 109.36610 * 58.40596 * 15 14 13 19 19 C 1.46900 * 111.00354 * 176.81097 * 18 15 14 20 20 C 1.50700 * 109.47371 * 169.99826 * 19 18 15 21 21 C 1.38239 * 119.99948 * 269.72898 * 20 19 18 22 22 C 1.38237 * 119.99873 * 179.78754 * 21 20 19 23 23 C 1.38232 * 119.99724 * 0.44126 * 22 21 20 24 24 C 1.38236 * 120.00242 * 359.80860 * 23 22 21 25 25 C 1.38229 * 120.00097 * 359.97438 * 24 23 22 26 26 C 1.46963 * 110.88015 * 300.67610 * 18 15 14 27 27 C 1.46956 * 110.99775 * 175.15298 * 13 3 2 28 28 H 1.09009 * 109.48804 * 63.21747 * 27 13 3 29 29 C 1.53004 * 109.49232 * 303.15818 * 27 13 3 30 30 H 1.09002 * 109.46880 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47259 * 299.99760 * 1 2 3 32 32 H 1.09000 * 109.47187 * 59.99928 * 1 2 3 33 33 H 1.08998 * 109.47259 * 240.00239 * 2 1 3 34 34 H 1.09000 * 109.47187 * 120.00072 * 2 1 3 35 35 H 0.97000 * 120.00176 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.48442 * 56.84632 * 14 13 3 37 37 H 1.09001 * 109.49034 * 296.78328 * 14 13 3 38 38 H 1.09002 * 109.46770 * 179.90226 * 17 15 14 39 39 H 1.09002 * 109.46872 * 299.90168 * 17 15 14 40 40 H 1.08992 * 109.46783 * 59.90353 * 17 15 14 41 41 H 1.09001 * 109.47311 * 289.99729 * 19 18 15 42 42 H 1.08995 * 109.47144 * 49.99733 * 19 18 15 43 43 H 1.08000 * 119.99818 * 359.97438 * 21 20 19 44 44 H 1.07996 * 119.99785 * 180.26999 * 22 21 20 45 45 H 1.08001 * 119.99539 * 179.84004 * 23 22 21 46 46 H 1.08000 * 119.99607 * 180.02562 * 24 23 22 47 47 H 1.08001 * 120.00295 * 180.02562 * 25 24 23 48 48 H 1.09000 * 109.49332 * 179.28313 * 26 18 15 49 49 H 1.08997 * 109.48746 * 299.36011 * 26 18 15 50 50 H 1.08994 * 109.46804 * 59.99485 * 29 27 13 51 51 H 1.08992 * 109.46914 * 179.97438 * 29 27 13 52 52 H 1.08998 * 109.46529 * 299.99704 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 5.4539 0.8804 1.3364 9 14 3.0962 0.1101 2.5708 10 1 2.8744 -1.3260 2.2646 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8093 2.6395 13 7 1.6513 2.0993 -1.2552 14 6 2.2409 1.4129 -2.4132 15 6 1.7493 2.0773 -3.7013 16 1 2.2080 1.5884 -4.5607 17 6 0.2274 1.9496 -3.7935 18 7 2.1221 3.4988 -3.6894 19 6 1.7335 4.1556 -4.9446 20 6 1.9035 5.6464 -4.8051 21 6 0.8538 6.4223 -4.3500 22 6 1.0112 7.7893 -4.2178 23 6 2.2153 8.3816 -4.5494 24 6 3.2634 7.6064 -5.0094 25 6 3.1075 6.2389 -5.1373 26 6 1.5326 4.1852 -2.5314 27 6 2.0241 3.5207 -1.2432 28 1 3.1084 3.6118 -1.1779 29 6 1.3803 4.2072 -0.0369 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.8769 0.4826 2.1134 36 1 1.9402 0.3652 -2.4067 37 1 3.3276 1.4800 -2.3612 38 1 -0.1222 2.4245 -4.7102 39 1 -0.0488 0.8952 -3.8023 40 1 -0.2309 2.4380 -2.9336 41 1 2.3649 3.7922 -5.7554 42 1 0.6908 3.9280 -5.1661 43 1 -0.0883 5.9600 -4.0949 44 1 0.1924 8.3948 -3.8582 45 1 2.3374 9.4499 -4.4486 46 1 4.2044 8.0692 -5.2680 47 1 3.9265 5.6332 -5.4962 48 1 1.8333 5.2329 -2.5377 49 1 0.4459 4.1180 -2.5833 50 1 1.7290 3.7325 0.8802 51 1 1.6573 5.2613 -0.0281 52 1 0.2961 4.1167 -0.1033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255177286.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:22 Heat of formation + Delta-G solvation = 46.972056 kcal Electronic energy + Delta-G solvation = -28576.721320 eV Core-core repulsion = 25155.390218 eV Total energy + Delta-G solvation = -3421.331102 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.05180 -38.80148 -36.32485 -33.28410 -32.72422 -31.90739 -30.93499 -30.50055 -28.66609 -27.43244 -26.22832 -25.20186 -23.72565 -22.72593 -22.47556 -21.04991 -20.81143 -19.51898 -18.23854 -16.78090 -16.48209 -16.09147 -15.42250 -15.24149 -15.01721 -14.55969 -14.26441 -14.06192 -13.82574 -13.59947 -13.36635 -13.05378 -12.83303 -12.77460 -12.53285 -12.25977 -12.02092 -11.86896 -11.73540 -11.59891 -11.52130 -11.35586 -11.04809 -10.99918 -10.90214 -10.79664 -10.66825 -10.45009 -10.22122 -10.01050 -9.72114 -9.53512 -9.46320 -9.09729 -8.89446 -8.76962 -8.52070 -7.89636 -7.05949 -6.07243 -4.06910 1.32317 1.40617 3.26965 3.38304 3.39906 3.71647 4.35846 4.40134 4.75852 4.83919 4.89911 4.98205 5.09540 5.23416 5.28903 5.32539 5.47224 5.48342 5.53581 5.62923 5.73810 5.76614 5.88538 5.92339 5.98778 6.00082 6.02976 6.04659 6.09527 6.13421 6.19806 6.23820 6.28484 6.38830 6.44236 6.49650 6.52868 6.63455 6.66323 6.69188 6.76173 6.81517 6.87212 6.96545 6.98705 7.00683 7.15117 7.30089 7.39610 7.46155 7.62782 8.17734 8.22331 8.50657 8.97659 9.56559 11.05658 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017720 B = 0.004036 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.720886 B = 6935.642628 C = 7462.622687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.178 3.822 4 H 0.044 0.956 5 C -0.539 4.539 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.884 3.116 10 H -0.280 1.280 11 H -0.300 1.300 12 H -0.265 1.265 13 N -0.518 5.518 14 C 0.066 3.934 15 C 0.082 3.918 16 H 0.075 0.925 17 C -0.175 4.175 18 N -0.523 5.523 19 C 0.088 3.912 20 C -0.075 4.075 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.100 4.100 26 C 0.062 3.938 27 C 0.090 3.910 28 H 0.058 0.942 29 C -0.139 4.139 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.045 0.955 35 H 0.262 0.738 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.123 0.877 48 H 0.072 0.928 49 H 0.036 0.964 50 H 0.068 0.932 51 H 0.046 0.954 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.108 9.370 -12.235 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.070 3.930 4 H 0.062 0.938 5 C -0.577 4.577 6 H 0.095 0.905 7 C -0.128 4.128 8 N -0.536 5.536 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.228 1.228 12 H -0.190 1.190 13 N -0.243 5.243 14 C -0.062 4.062 15 C -0.026 4.026 16 H 0.093 0.907 17 C -0.234 4.234 18 N -0.247 5.247 19 C -0.040 4.040 20 C -0.075 4.075 21 C -0.131 4.131 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.118 4.118 26 C -0.066 4.066 27 C -0.019 4.019 28 H 0.076 0.924 29 C -0.197 4.197 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.135 0.865 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.141 0.859 48 H 0.090 0.910 49 H 0.054 0.946 50 H 0.086 0.914 51 H 0.065 0.935 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.953 9.307 -12.125 18.241 hybrid contribution -0.293 -0.550 0.875 1.074 sum -10.246 8.757 -11.250 17.556 Atomic orbital electron populations 1.21728 0.97504 0.99199 1.01554 1.21959 0.93910 0.99606 1.00562 1.19769 0.94544 0.90206 0.88444 0.93848 1.21628 0.90660 1.38488 1.06959 0.90455 1.24971 0.94622 0.95446 0.97784 1.69922 1.08812 1.45257 1.29646 0.86906 0.80735 0.79835 0.81033 1.20681 1.22752 1.18952 1.62553 1.57433 1.01103 1.03198 1.22003 0.98792 0.97064 0.88387 1.21839 0.93764 0.88051 0.98952 0.90727 1.22325 0.97876 1.02038 1.01145 1.62506 1.58698 1.02152 1.01316 1.21142 0.99554 0.89624 0.93643 1.19818 0.93918 0.95248 0.98527 1.21076 0.98685 0.93848 0.99514 1.21081 0.97649 0.94822 1.00526 1.21112 0.93619 0.99682 0.99886 1.21143 0.98779 0.94053 1.00019 1.21057 0.96827 0.94600 0.99348 1.22345 0.96691 0.97632 0.89936 1.21409 0.99117 0.88955 0.92455 0.92393 1.21775 1.00014 0.98953 0.98999 0.94966 0.94048 0.92025 0.92325 0.93642 0.92796 0.90919 0.92859 0.94043 0.92529 0.90905 0.90353 0.93714 0.86461 0.86339 0.86435 0.86254 0.85921 0.90956 0.94614 0.91353 0.93530 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.80 37.16 0.36 -2.18 16 2 C -0.12 -2.59 4.72 -26.73 -0.13 -2.72 16 3 C 0.18 3.99 1.01 -68.86 -0.07 3.92 16 4 H 0.04 1.03 5.04 -51.93 -0.26 0.77 16 5 C -0.54 -14.41 7.71 -34.44 -0.27 -14.68 16 6 H 0.08 2.31 6.05 -52.49 -0.32 1.99 16 7 C 0.07 2.09 5.45 -17.82 -0.10 1.99 16 8 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 9 Si 0.88 21.76 24.41 -169.99 -4.15 17.61 16 10 H -0.28 -6.77 6.83 56.52 0.39 -6.38 16 11 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.26 -6.23 6.53 56.52 0.37 -5.86 16 13 N -0.52 -9.98 3.29 -219.94 -0.72 -10.70 16 14 C 0.07 1.23 4.39 -3.77 -0.02 1.21 16 15 C 0.08 1.25 2.97 -67.66 -0.20 1.05 16 16 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 17 C -0.18 -2.36 8.40 37.16 0.31 -2.05 16 18 N -0.52 -7.92 4.80 -227.93 -1.09 -9.02 16 19 C 0.09 1.09 5.29 -4.98 -0.03 1.07 16 20 C -0.07 -0.92 4.13 -104.62 -0.43 -1.35 16 21 C -0.11 -1.30 7.87 -39.58 -0.31 -1.61 16 22 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 23 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.12 -1.33 10.05 -39.59 -0.40 -1.72 16 25 C -0.10 -1.20 9.70 -39.59 -0.38 -1.58 16 26 C 0.06 0.97 3.55 -3.76 -0.01 0.96 16 27 C 0.09 1.69 2.26 -67.65 -0.15 1.53 16 28 H 0.06 1.32 6.88 -51.92 -0.36 0.96 16 29 C -0.14 -2.45 8.87 37.16 0.33 -2.12 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.05 7.75 -51.93 -0.40 0.64 16 33 H 0.06 1.22 6.11 -51.93 -0.32 0.91 16 34 H 0.05 1.04 3.22 -51.93 -0.17 0.87 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.07 1.34 6.07 -51.93 -0.32 1.02 16 37 H 0.05 1.18 6.52 -51.93 -0.34 0.84 16 38 H 0.04 0.50 6.28 -51.93 -0.33 0.17 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.09 5.94 -51.93 -0.31 0.78 16 41 H 0.08 0.92 8.09 -51.93 -0.42 0.50 16 42 H 0.04 0.53 5.90 -51.93 -0.31 0.23 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 47 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 48 H 0.07 1.15 5.86 -51.93 -0.30 0.84 16 49 H 0.04 0.55 6.35 -51.93 -0.33 0.22 16 50 H 0.07 1.35 6.25 -51.93 -0.32 1.02 16 51 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -28.83 372.92 -10.49 -39.32 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -8.63 Total: 5.21 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -2.28 Total: -21.66 kcal Atomic # 7 Polarization: -45.06 SS G_CDS: -1.04 Total: -46.10 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.15 Total: 17.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.83 -10.49 -39.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177286.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.289 kcal (2) G-P(sol) polarization free energy of solvation -28.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds