Wall clock time and date at job start Tue Mar 31 2020 11:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46948 * 2 1 4 4 H 1.08997 * 109.46845 * 54.99946 * 3 2 1 5 5 C 1.50699 * 109.47000 * 174.99941 * 3 2 1 6 6 H 1.07993 * 120.00237 * 120.00159 * 5 3 2 7 7 C 1.37880 * 119.99882 * 300.00152 * 5 3 2 8 8 N 1.31519 * 120.00194 * 180.02562 * 7 5 3 9 9 Si 1.86806 * 120.00305 * 359.97438 * 7 5 3 10 10 H 1.48501 * 109.46742 * 89.99897 * 9 7 5 11 11 H 1.48497 * 109.47149 * 210.00066 * 9 7 5 12 12 H 1.48496 * 109.46880 * 330.00572 * 9 7 5 13 13 N 1.46896 * 109.46999 * 294.99978 * 3 2 1 14 14 C 1.46959 * 111.00014 * 298.95103 * 13 3 2 15 15 C 1.53045 * 109.36290 * 176.81298 * 14 13 3 16 16 H 1.08997 * 109.49000 * 178.37001 * 15 14 13 17 17 C 1.53004 * 109.50925 * 298.42630 * 15 14 13 18 18 N 1.46956 * 109.36610 * 58.40596 * 15 14 13 19 19 C 1.46900 * 111.00354 * 176.81097 * 18 15 14 20 20 C 1.50700 * 109.47371 * 169.99826 * 19 18 15 21 21 C 1.38239 * 119.99948 * 269.72898 * 20 19 18 22 22 C 1.38237 * 119.99873 * 179.78754 * 21 20 19 23 23 C 1.38232 * 119.99724 * 0.44126 * 22 21 20 24 24 C 1.38236 * 120.00242 * 359.80860 * 23 22 21 25 25 C 1.38229 * 120.00097 * 359.97438 * 24 23 22 26 26 C 1.46963 * 110.88015 * 300.67610 * 18 15 14 27 27 C 1.46956 * 110.99775 * 175.15298 * 13 3 2 28 28 H 1.09009 * 109.48804 * 63.21747 * 27 13 3 29 29 C 1.53004 * 109.49232 * 303.15818 * 27 13 3 30 30 H 1.09002 * 109.46880 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47259 * 299.99760 * 1 2 3 32 32 H 1.09000 * 109.47187 * 59.99928 * 1 2 3 33 33 H 1.08998 * 109.47259 * 240.00239 * 2 1 3 34 34 H 1.09000 * 109.47187 * 120.00072 * 2 1 3 35 35 H 0.97000 * 120.00176 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.48442 * 56.84632 * 14 13 3 37 37 H 1.09001 * 109.49034 * 296.78328 * 14 13 3 38 38 H 1.09002 * 109.46770 * 179.90226 * 17 15 14 39 39 H 1.09002 * 109.46872 * 299.90168 * 17 15 14 40 40 H 1.08992 * 109.46783 * 59.90353 * 17 15 14 41 41 H 1.09001 * 109.47311 * 289.99729 * 19 18 15 42 42 H 1.08995 * 109.47144 * 49.99733 * 19 18 15 43 43 H 1.08000 * 119.99818 * 359.97438 * 21 20 19 44 44 H 1.07996 * 119.99785 * 180.26999 * 22 21 20 45 45 H 1.08001 * 119.99539 * 179.84004 * 23 22 21 46 46 H 1.08000 * 119.99607 * 180.02562 * 24 23 22 47 47 H 1.08001 * 120.00295 * 180.02562 * 25 24 23 48 48 H 1.09000 * 109.49332 * 179.28313 * 26 18 15 49 49 H 1.08997 * 109.48746 * 299.36011 * 26 18 15 50 50 H 1.08994 * 109.46804 * 59.99485 * 29 27 13 51 51 H 1.08992 * 109.46914 * 179.97438 * 29 27 13 52 52 H 1.08998 * 109.46529 * 299.99704 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8889 -0.6522 7 6 4.1432 0.8784 1.2280 8 7 5.4539 0.8804 1.3364 9 14 3.0962 0.1101 2.5708 10 1 2.8744 -1.3260 2.2646 11 1 3.7940 0.2360 3.8755 12 1 1.7880 0.8093 2.6395 13 7 1.6513 2.0993 -1.2552 14 6 2.2409 1.4129 -2.4132 15 6 1.7493 2.0773 -3.7013 16 1 2.2080 1.5884 -4.5607 17 6 0.2274 1.9496 -3.7935 18 7 2.1221 3.4988 -3.6894 19 6 1.7335 4.1556 -4.9446 20 6 1.9035 5.6464 -4.8051 21 6 0.8538 6.4223 -4.3500 22 6 1.0112 7.7893 -4.2178 23 6 2.2153 8.3816 -4.5494 24 6 3.2634 7.6064 -5.0094 25 6 3.1075 6.2389 -5.1373 26 6 1.5326 4.1852 -2.5314 27 6 2.0241 3.5207 -1.2432 28 1 3.1084 3.6118 -1.1779 29 6 1.3803 4.2072 -0.0369 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.8769 0.4826 2.1134 36 1 1.9402 0.3652 -2.4067 37 1 3.3276 1.4800 -2.3612 38 1 -0.1222 2.4245 -4.7102 39 1 -0.0488 0.8952 -3.8023 40 1 -0.2309 2.4380 -2.9336 41 1 2.3649 3.7922 -5.7554 42 1 0.6908 3.9280 -5.1661 43 1 -0.0883 5.9600 -4.0949 44 1 0.1924 8.3948 -3.8582 45 1 2.3374 9.4499 -4.4486 46 1 4.2044 8.0692 -5.2680 47 1 3.9265 5.6332 -5.4962 48 1 1.8333 5.2329 -2.5377 49 1 0.4459 4.1180 -2.5833 50 1 1.7290 3.7325 0.8802 51 1 1.6573 5.2613 -0.0281 52 1 0.2961 4.1167 -0.1033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255177286.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:20 Heat of formation + Delta-G solvation = 29.603845 kcal Electronic energy + Delta-G solvation = -28577.474463 eV Core-core repulsion = 25155.390218 eV Total energy + Delta-G solvation = -3422.084244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27440 -39.90123 -37.76870 -34.89565 -34.12023 -33.69396 -31.86460 -31.65268 -29.96231 -29.03433 -27.61472 -26.55802 -25.06502 -24.35458 -23.40258 -22.30986 -22.00127 -21.12631 -19.87846 -18.32543 -17.73155 -17.46579 -16.65132 -16.48810 -16.24233 -16.10771 -15.58034 -15.50196 -15.24688 -14.84150 -14.66657 -14.22708 -14.17623 -13.99897 -13.93383 -13.67822 -13.43808 -13.31173 -13.21158 -12.99039 -12.75585 -12.59843 -12.51109 -12.37495 -12.22305 -12.13728 -11.93235 -11.86581 -11.71205 -11.61104 -11.34666 -11.31250 -11.14147 -10.86823 -10.64199 -9.74426 -9.65759 -9.06313 -8.79606 -8.28213 -6.30860 0.46932 0.56418 1.29130 1.34426 1.44687 2.31581 2.80300 3.07463 3.25528 3.29749 3.81458 3.98290 4.00479 4.18162 4.20837 4.23643 4.33017 4.34269 4.40159 4.46265 4.50446 4.52609 4.56952 4.66259 4.67706 4.75160 4.77186 4.80271 4.86429 4.87099 4.92667 5.06765 5.09818 5.15579 5.17436 5.19764 5.21861 5.24921 5.27638 5.33185 5.43436 5.52444 5.56568 5.61264 5.61505 5.65051 5.67538 5.77099 6.13738 6.17804 6.22638 6.30304 6.47634 6.57705 6.79042 7.36538 8.88782 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017720 B = 0.004036 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.720886 B = 6935.642628 C = 7462.622687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.123 4.123 3 C 0.182 3.818 4 H 0.039 0.961 5 C -0.527 4.527 6 H 0.029 0.971 7 C 0.014 3.986 8 N -0.951 5.951 9 Si 0.946 3.054 10 H -0.269 1.269 11 H -0.305 1.305 12 H -0.244 1.244 13 N -0.499 5.499 14 C 0.070 3.930 15 C 0.088 3.912 16 H 0.085 0.915 17 C -0.164 4.164 18 N -0.544 5.544 19 C 0.094 3.906 20 C -0.090 4.090 21 C -0.120 4.120 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.131 4.131 25 C -0.119 4.119 26 C 0.080 3.920 27 C 0.088 3.912 28 H 0.005 0.995 29 C -0.133 4.133 30 H 0.055 0.945 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.031 0.969 35 H 0.262 0.738 36 H 0.075 0.925 37 H 0.004 0.996 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.127 0.873 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.134 0.866 47 H 0.119 0.881 48 H 0.073 0.927 49 H 0.052 0.948 50 H 0.040 0.960 51 H 0.062 0.938 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.811 10.006 -12.989 21.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.057 0.943 5 C -0.566 4.566 6 H 0.047 0.953 7 C -0.183 4.183 8 N -0.592 5.592 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.233 1.233 12 H -0.167 1.167 13 N -0.222 5.222 14 C -0.059 4.059 15 C -0.021 4.021 16 H 0.103 0.897 17 C -0.222 4.222 18 N -0.268 5.268 19 C -0.033 4.033 20 C -0.091 4.091 21 C -0.138 4.138 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.137 4.137 26 C -0.048 4.048 27 C -0.022 4.022 28 H 0.023 0.977 29 C -0.191 4.191 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.022 0.978 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.145 0.855 44 H 0.159 0.841 45 H 0.158 0.842 46 H 0.152 0.848 47 H 0.137 0.863 48 H 0.091 0.909 49 H 0.070 0.930 50 H 0.059 0.941 51 H 0.081 0.919 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.685 9.951 -12.907 21.282 hybrid contribution 0.982 -0.644 1.001 1.543 sum -12.703 9.307 -11.906 19.742 Atomic orbital electron populations 1.21630 0.94129 1.01001 1.02190 1.21881 0.96843 0.97649 0.99731 1.19652 0.91187 0.91831 0.89948 0.94301 1.21862 0.93055 1.36506 1.05151 0.95282 1.25807 0.95619 0.96396 1.00446 1.70088 1.10957 1.47462 1.30727 0.85893 0.79706 0.79550 0.77480 1.19514 1.23284 1.16723 1.62618 1.56249 1.01248 1.02130 1.21979 0.95843 0.97860 0.90197 1.21741 0.95462 0.87954 0.96895 0.89670 1.22202 0.95544 1.02737 1.01753 1.62416 1.59653 1.02311 1.02431 1.21132 1.00352 0.89726 0.92066 1.19871 0.94443 0.95147 0.99592 1.21244 0.98774 0.94378 0.99428 1.21406 0.98391 0.94774 0.99887 1.21452 0.93314 1.00908 0.98963 1.21406 0.99839 0.93780 0.99908 1.21205 0.96977 0.95396 1.00147 1.22093 0.97203 0.97074 0.88402 1.21458 0.96230 0.89175 0.95303 0.97719 1.21714 1.01098 0.99457 0.96852 0.92622 0.93747 0.91024 0.92628 0.95096 0.92921 0.90636 0.97796 0.91853 0.91745 0.91902 0.89920 0.92282 0.85479 0.84120 0.84177 0.84798 0.86275 0.90920 0.93041 0.94062 0.91908 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 9.80 71.98 0.71 -3.55 16 2 C -0.12 -5.06 4.72 30.60 0.14 -4.91 16 3 C 0.18 8.24 1.01 44.17 0.04 8.28 16 4 H 0.04 1.83 5.04 -2.39 -0.01 1.82 16 5 C -0.53 -29.73 7.71 25.60 0.20 -29.53 16 6 H 0.03 1.89 6.05 -2.91 -0.02 1.87 16 7 C 0.01 0.84 5.45 84.65 0.46 1.31 16 8 N -0.95 -60.59 13.96 21.45 0.30 -60.29 16 9 Si 0.95 45.54 24.41 68.60 1.67 47.21 16 10 H -0.27 -12.40 6.83 99.48 0.68 -11.72 16 11 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 12 H -0.24 -10.78 6.53 99.48 0.65 -10.13 16 13 N -0.50 -19.26 3.29 -849.75 -2.79 -22.06 16 14 C 0.07 2.66 4.39 86.31 0.38 3.04 16 15 C 0.09 2.58 2.97 44.92 0.13 2.71 16 16 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 17 C -0.16 -3.90 8.40 71.98 0.60 -3.29 16 18 N -0.54 -16.18 4.80 -875.02 -4.20 -20.38 16 19 C 0.09 2.19 5.29 85.56 0.45 2.64 16 20 C -0.09 -2.10 4.13 -19.86 -0.08 -2.18 16 21 C -0.12 -2.48 7.87 22.27 0.18 -2.30 16 22 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 23 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 24 C -0.13 -2.71 10.05 22.27 0.22 -2.48 16 25 C -0.12 -2.79 9.70 22.27 0.22 -2.58 16 26 C 0.08 2.45 3.55 86.31 0.31 2.75 16 27 C 0.09 3.36 2.26 44.92 0.10 3.46 16 28 H 0.00 0.23 6.88 -2.38 -0.02 0.21 16 29 C -0.13 -4.60 8.87 71.98 0.64 -3.96 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 2.16 7.75 -2.39 -0.02 2.14 16 33 H 0.06 2.28 6.11 -2.39 -0.01 2.27 16 34 H 0.03 1.36 3.22 -2.39 -0.01 1.35 16 35 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 36 H 0.08 2.78 6.07 -2.39 -0.01 2.77 16 37 H 0.00 0.18 6.52 -2.39 -0.02 0.16 16 38 H 0.06 1.26 6.28 -2.39 -0.01 1.24 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 1.65 5.94 -2.39 -0.01 1.63 16 41 H 0.08 1.84 8.09 -2.39 -0.02 1.82 16 42 H 0.06 1.22 5.90 -2.39 -0.01 1.20 16 43 H 0.13 2.33 8.06 -2.91 -0.02 2.30 16 44 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 45 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 46 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 47 H 0.12 2.76 8.06 -2.91 -0.02 2.73 16 48 H 0.07 2.23 5.86 -2.39 -0.01 2.22 16 49 H 0.05 1.43 6.35 -2.39 -0.02 1.42 16 50 H 0.04 1.63 6.25 -2.39 -0.01 1.61 16 51 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -66.85 372.92 0.94 -65.92 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: 0.81 Total: 24.47 kcal Atomic # 6 Polarization: -40.03 SS G_CDS: 5.15 Total: -34.88 kcal Atomic # 7 Polarization: -96.03 SS G_CDS: -6.70 Total: -102.72 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.67 Total: 47.21 kcal Total: -66.85 0.94 -65.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255177286.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.519 kcal (2) G-P(sol) polarization free energy of solvation -66.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds