Wall clock time and date at job start Tue Mar 31 2020 11:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47099 * 2 1 4 4 H 1.08998 * 109.47138 * 55.56656 * 3 2 1 5 5 C 1.50700 * 109.46830 * 175.56618 * 3 2 1 6 6 H 1.07998 * 119.99520 * 119.99910 * 5 3 2 7 7 C 1.37870 * 120.00227 * 299.99952 * 5 3 2 8 8 N 1.31523 * 120.00172 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00197 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46964 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46726 * 119.99869 * 9 7 5 12 12 H 1.48500 * 109.47259 * 239.99935 * 9 7 5 13 13 N 1.46897 * 109.46799 * 295.56540 * 3 2 1 14 14 C 1.46956 * 111.00102 * 318.50446 * 13 3 2 15 15 C 1.53054 * 109.36149 * 183.19150 * 14 13 3 16 16 N 1.46961 * 109.36200 * 301.59710 * 15 14 13 17 17 C 1.46901 * 110.99551 * 183.19086 * 16 15 14 18 18 C 1.50697 * 109.47598 * 46.20262 * 17 16 15 19 19 C 1.38237 * 119.99796 * 269.72692 * 18 17 16 20 20 C 1.38242 * 119.99292 * 179.76257 * 19 18 17 21 21 C 1.38229 * 120.00679 * 0.50642 * 20 19 18 22 22 C 1.38238 * 119.99309 * 359.74821 * 21 20 19 23 23 C 1.38229 * 120.00539 * 359.97438 * 22 21 20 24 24 C 1.46956 * 110.88182 * 59.32500 * 16 15 14 25 25 C 1.47004 * 110.99337 * 82.32061 * 13 3 2 26 26 H 1.09006 * 109.48015 * 296.76764 * 25 13 3 27 27 C 1.52991 * 109.52059 * 56.84682 * 25 13 3 28 28 C 1.52997 * 109.47353 * 181.05902 * 27 25 13 29 29 H 1.09008 * 109.47093 * 319.43808 * 1 2 3 30 30 H 1.08998 * 109.47288 * 79.43438 * 1 2 3 31 31 H 1.08996 * 109.47189 * 199.44142 * 1 2 3 32 32 H 1.09000 * 109.47076 * 239.99831 * 2 1 3 33 33 H 1.09007 * 109.47133 * 119.99911 * 2 1 3 34 34 H 0.96994 * 119.99633 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.48965 * 63.22437 * 14 13 3 36 36 H 1.08996 * 109.49224 * 303.15411 * 14 13 3 37 37 H 1.09004 * 109.48569 * 181.63575 * 15 14 13 38 38 H 1.08995 * 109.50923 * 61.57817 * 15 14 13 39 39 H 1.09009 * 109.46774 * 166.20452 * 17 16 15 40 40 H 1.08996 * 109.47279 * 286.19862 * 17 16 15 41 41 H 1.07994 * 120.00140 * 359.97438 * 19 18 17 42 42 H 1.08008 * 119.99409 * 180.22801 * 20 19 18 43 43 H 1.07996 * 120.00417 * 179.72396 * 21 20 19 44 44 H 1.08005 * 119.99693 * 179.97438 * 22 21 20 45 45 H 1.08004 * 119.99965 * 179.97438 * 23 22 21 46 46 H 1.09002 * 109.48965 * 60.64243 * 24 16 15 47 47 H 1.09000 * 109.48803 * 180.68582 * 24 16 15 48 48 H 1.09002 * 109.47155 * 301.05501 * 27 25 13 49 49 H 1.09000 * 109.47399 * 61.05752 * 27 25 13 50 50 H 1.09001 * 109.46828 * 303.13631 * 28 27 25 51 51 H 1.09007 * 109.47404 * 63.13323 * 28 27 25 52 52 H 1.08997 * 109.48056 * 183.13752 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6132 1.9788 0.8476 5 6 3.5430 1.4439 0.1098 6 1 4.1409 1.8910 -0.6705 7 6 4.1546 0.8744 1.2064 8 7 3.4263 0.3303 2.1569 9 14 6.0177 0.8754 1.3422 10 1 6.6004 1.5445 0.1514 11 1 6.4241 1.6071 2.5689 12 1 6.5095 -0.5239 1.4146 13 7 1.6397 2.1034 -1.2494 14 6 1.8070 1.2028 -2.3985 15 6 1.4561 1.9524 -3.6860 16 7 0.0735 2.4436 -3.6024 17 6 -0.3267 3.1045 -4.8518 18 6 0.0840 2.2523 -6.0248 19 6 1.3256 2.4291 -6.6064 20 6 1.7042 1.6439 -7.6793 21 6 0.8373 0.6894 -8.1774 22 6 -0.4063 0.5164 -7.5991 23 6 -0.7828 1.2974 -6.5226 24 6 -0.0938 3.3442 -2.4532 25 6 0.2568 2.5950 -1.1655 26 1 -0.4219 1.7514 -1.0393 27 6 0.1225 3.5419 0.0287 28 6 -1.3232 4.0323 0.1306 29 1 -0.3634 0.7808 0.6683 30 1 -0.3634 0.1884 -1.0102 31 1 -0.3633 -0.9690 0.3420 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8567 -0.0706 2.9281 35 1 1.1459 0.3434 -2.2864 36 1 2.8413 0.8625 -2.4464 37 1 1.5515 1.2779 -4.5370 38 1 2.1347 2.7959 -3.8126 39 1 -1.4085 3.2389 -4.8613 40 1 0.1607 4.0769 -4.9208 41 1 2.0010 3.1781 -6.2203 42 1 2.6757 1.7795 -8.1314 43 1 1.1314 0.0791 -9.0185 44 1 -1.0839 -0.2292 -7.9885 45 1 -1.7546 1.1624 -6.0711 46 1 0.5673 4.2036 -2.5654 47 1 -1.1281 3.6848 -2.4057 48 1 0.3923 3.0138 0.9432 49 1 0.7868 4.3952 -0.1077 50 1 -1.6111 4.5115 -0.8051 51 1 -1.9816 3.1850 0.3226 52 1 -1.4069 4.7497 0.9469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255178782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:24 Heat of formation + Delta-G solvation = 44.913278 kcal Electronic energy + Delta-G solvation = -28196.647848 eV Core-core repulsion = 24775.227470 eV Total energy + Delta-G solvation = -3421.420378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.90746 -38.88281 -36.11911 -33.95908 -32.51548 -31.61635 -30.95061 -30.40062 -28.83922 -27.73638 -25.99712 -24.18611 -23.70648 -22.63372 -22.47605 -21.40433 -20.16325 -19.76933 -18.54708 -16.77057 -16.31482 -15.95937 -15.40772 -15.34130 -14.73199 -14.46142 -14.36670 -13.98983 -13.92890 -13.53673 -13.44287 -13.32348 -12.97566 -12.76731 -12.47697 -12.25053 -12.21650 -11.75020 -11.50857 -11.41100 -11.23826 -11.06834 -11.01556 -10.96078 -10.80470 -10.68237 -10.61095 -10.33795 -10.19501 -10.13600 -9.87503 -9.55986 -9.26508 -8.93211 -8.80880 -8.79948 -8.24018 -8.00943 -6.92246 -5.95387 -3.97828 1.28537 1.37029 3.32411 3.40604 3.45347 3.68034 4.33328 4.45393 4.71827 4.81289 4.94610 4.95296 5.06734 5.26074 5.34094 5.39072 5.45762 5.48356 5.59072 5.61061 5.65540 5.71635 5.83206 5.92732 5.93990 5.96157 5.98920 6.03098 6.12927 6.21077 6.24251 6.31598 6.39243 6.41025 6.43833 6.46102 6.51302 6.59620 6.61225 6.73176 6.80056 6.84508 6.94934 7.01297 7.08478 7.30684 7.33592 7.37979 7.59904 7.80035 7.93174 8.29265 8.48646 8.68732 9.09407 9.66718 11.10889 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.004067 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.527807 B = 6883.039049 C = 8050.797884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.152 4.152 3 C 0.212 3.788 4 H 0.047 0.953 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.892 3.108 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.526 5.526 14 C 0.064 3.936 15 C 0.055 3.945 16 N -0.532 5.532 17 C 0.092 3.908 18 C -0.076 4.076 19 C -0.111 4.111 20 C -0.122 4.122 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.101 4.101 24 C 0.064 3.936 25 C 0.070 3.930 26 H 0.063 0.937 27 C -0.120 4.120 28 C -0.149 4.149 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.030 0.970 32 H 0.038 0.962 33 H 0.096 0.904 34 H 0.258 0.742 35 H 0.039 0.961 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.079 0.921 40 H 0.039 0.961 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.035 0.965 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.063 0.937 50 H 0.050 0.950 51 H 0.050 0.950 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.300 3.714 -15.236 18.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.192 4.192 3 C 0.106 3.894 4 H 0.065 0.935 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.250 5.250 14 C -0.064 4.064 15 C -0.072 4.072 16 N -0.256 5.256 17 C -0.035 4.035 18 C -0.076 4.076 19 C -0.130 4.130 20 C -0.140 4.140 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.119 4.119 24 C -0.064 4.064 25 C -0.039 4.039 26 H 0.080 0.920 27 C -0.158 4.158 28 C -0.207 4.207 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.052 0.948 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.082 0.918 50 H 0.069 0.931 51 H 0.069 0.931 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.266 3.645 -15.050 18.046 hybrid contribution 1.093 -0.128 0.147 1.110 sum -8.173 3.516 -14.904 17.357 Atomic orbital electron populations 1.22148 0.99560 0.99509 0.99641 1.22244 0.91620 1.02413 1.02898 1.19472 0.95260 0.88572 0.86108 0.93518 1.21188 0.91093 1.35646 1.05114 0.92176 1.24911 0.97943 0.95653 0.95834 1.69888 1.34583 1.39273 1.09734 0.86531 0.86056 0.77456 0.77887 1.19861 1.21217 1.21283 1.62486 1.18842 1.38656 1.05026 1.22036 1.01029 0.94157 0.89209 1.22355 0.87393 0.98632 0.98861 1.62321 1.24148 1.37490 1.01654 1.21075 1.00692 0.94229 0.87532 1.19800 0.94319 0.97256 0.96234 1.21120 0.95886 0.99831 0.96171 1.21108 0.99555 0.96359 0.96943 1.21121 0.94374 0.98541 1.00207 1.21133 0.96687 0.99580 0.96710 1.21025 0.99752 0.95174 0.95980 1.22290 0.99884 0.93923 0.90288 1.21963 0.92296 0.97116 0.92548 0.91982 1.21638 0.95625 0.99517 0.98985 1.21814 0.97376 1.00623 1.00860 0.93599 0.93657 0.95071 0.94302 0.88603 0.93205 0.94327 0.90374 0.90941 0.94802 0.90299 0.94271 0.86299 0.86226 0.86388 0.86274 0.86001 0.94656 0.91226 0.90482 0.91834 0.93141 0.93126 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.10 37.16 0.30 -2.73 16 2 C -0.15 -3.56 4.71 -26.73 -0.13 -3.69 16 3 C 0.21 5.11 1.74 -68.86 -0.12 4.99 16 4 H 0.05 1.23 5.22 -51.93 -0.27 0.96 16 5 C -0.49 -13.27 8.23 -34.44 -0.28 -13.55 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 8 N -0.89 -25.13 11.30 55.43 0.63 -24.50 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.53 -10.94 4.38 -219.91 -0.96 -11.91 16 14 C 0.06 1.26 4.31 -3.77 -0.02 1.24 16 15 C 0.06 0.91 4.65 -3.76 -0.02 0.90 16 16 N -0.53 -8.00 4.85 -235.90 -1.14 -9.14 16 17 C 0.09 1.14 5.44 -4.98 -0.03 1.12 16 18 C -0.08 -0.92 4.13 -104.62 -0.43 -1.35 16 19 C -0.11 -1.31 7.87 -39.58 -0.31 -1.62 16 20 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 21 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 22 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 23 C -0.10 -1.15 9.70 -39.59 -0.38 -1.53 16 24 C 0.06 0.99 4.49 -3.77 -0.02 0.97 16 25 C 0.07 1.24 1.47 -67.64 -0.10 1.14 16 26 H 0.06 1.16 4.03 -51.93 -0.21 0.95 16 27 C -0.12 -2.04 5.17 -26.74 -0.14 -2.18 16 28 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 29 H 0.04 0.91 7.19 -51.92 -0.37 0.54 16 30 H 0.04 0.87 5.13 -51.93 -0.27 0.60 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.91 6.14 -51.93 -0.32 0.59 16 33 H 0.10 2.54 5.97 -51.92 -0.31 2.23 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.04 0.79 5.14 -51.93 -0.27 0.52 16 36 H 0.08 1.66 7.68 -51.93 -0.40 1.26 16 37 H 0.07 1.15 5.86 -51.93 -0.30 0.85 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.88 8.09 -51.92 -0.42 0.46 16 40 H 0.04 0.48 8.02 -51.93 -0.42 0.06 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 42 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 44 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 45 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.95 6.48 -51.93 -0.34 0.61 16 48 H 0.08 1.51 5.79 -51.93 -0.30 1.21 16 49 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.05 0.61 6.34 -51.93 -0.33 0.29 16 51 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -27.84 378.83 -12.11 -39.95 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -8.72 Total: 5.07 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: -2.60 Total: -21.52 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: -1.48 Total: -45.55 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -27.84 -12.11 -39.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.866 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds