Wall clock time and date at job start Tue Mar 31 2020 11:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47099 * 2 1 4 4 H 1.08998 * 109.47138 * 55.56656 * 3 2 1 5 5 C 1.50700 * 109.46830 * 175.56618 * 3 2 1 6 6 H 1.07998 * 119.99520 * 119.99910 * 5 3 2 7 7 C 1.37870 * 120.00227 * 299.99952 * 5 3 2 8 8 N 1.31523 * 120.00172 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00197 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46964 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46726 * 119.99869 * 9 7 5 12 12 H 1.48500 * 109.47259 * 239.99935 * 9 7 5 13 13 N 1.46897 * 109.46799 * 295.56540 * 3 2 1 14 14 C 1.46956 * 111.00102 * 318.50446 * 13 3 2 15 15 C 1.53054 * 109.36149 * 183.19150 * 14 13 3 16 16 N 1.46961 * 109.36200 * 301.59710 * 15 14 13 17 17 C 1.46901 * 110.99551 * 183.19086 * 16 15 14 18 18 C 1.50697 * 109.47598 * 46.20262 * 17 16 15 19 19 C 1.38237 * 119.99796 * 269.72692 * 18 17 16 20 20 C 1.38242 * 119.99292 * 179.76257 * 19 18 17 21 21 C 1.38229 * 120.00679 * 0.50642 * 20 19 18 22 22 C 1.38238 * 119.99309 * 359.74821 * 21 20 19 23 23 C 1.38229 * 120.00539 * 359.97438 * 22 21 20 24 24 C 1.46956 * 110.88182 * 59.32500 * 16 15 14 25 25 C 1.47004 * 110.99337 * 82.32061 * 13 3 2 26 26 H 1.09006 * 109.48015 * 296.76764 * 25 13 3 27 27 C 1.52991 * 109.52059 * 56.84682 * 25 13 3 28 28 C 1.52997 * 109.47353 * 181.05902 * 27 25 13 29 29 H 1.09008 * 109.47093 * 319.43808 * 1 2 3 30 30 H 1.08998 * 109.47288 * 79.43438 * 1 2 3 31 31 H 1.08996 * 109.47189 * 199.44142 * 1 2 3 32 32 H 1.09000 * 109.47076 * 239.99831 * 2 1 3 33 33 H 1.09007 * 109.47133 * 119.99911 * 2 1 3 34 34 H 0.96994 * 119.99633 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.48965 * 63.22437 * 14 13 3 36 36 H 1.08996 * 109.49224 * 303.15411 * 14 13 3 37 37 H 1.09004 * 109.48569 * 181.63575 * 15 14 13 38 38 H 1.08995 * 109.50923 * 61.57817 * 15 14 13 39 39 H 1.09009 * 109.46774 * 166.20452 * 17 16 15 40 40 H 1.08996 * 109.47279 * 286.19862 * 17 16 15 41 41 H 1.07994 * 120.00140 * 359.97438 * 19 18 17 42 42 H 1.08008 * 119.99409 * 180.22801 * 20 19 18 43 43 H 1.07996 * 120.00417 * 179.72396 * 21 20 19 44 44 H 1.08005 * 119.99693 * 179.97438 * 22 21 20 45 45 H 1.08004 * 119.99965 * 179.97438 * 23 22 21 46 46 H 1.09002 * 109.48965 * 60.64243 * 24 16 15 47 47 H 1.09000 * 109.48803 * 180.68582 * 24 16 15 48 48 H 1.09002 * 109.47155 * 301.05501 * 27 25 13 49 49 H 1.09000 * 109.47399 * 61.05752 * 27 25 13 50 50 H 1.09001 * 109.46828 * 303.13631 * 28 27 25 51 51 H 1.09007 * 109.47404 * 63.13323 * 28 27 25 52 52 H 1.08997 * 109.48056 * 183.13752 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6132 1.9788 0.8476 5 6 3.5430 1.4439 0.1098 6 1 4.1409 1.8910 -0.6705 7 6 4.1546 0.8744 1.2064 8 7 3.4263 0.3303 2.1569 9 14 6.0177 0.8754 1.3422 10 1 6.6004 1.5445 0.1514 11 1 6.4241 1.6071 2.5689 12 1 6.5095 -0.5239 1.4146 13 7 1.6397 2.1034 -1.2494 14 6 1.8070 1.2028 -2.3985 15 6 1.4561 1.9524 -3.6860 16 7 0.0735 2.4436 -3.6024 17 6 -0.3267 3.1045 -4.8518 18 6 0.0840 2.2523 -6.0248 19 6 1.3256 2.4291 -6.6064 20 6 1.7042 1.6439 -7.6793 21 6 0.8373 0.6894 -8.1774 22 6 -0.4063 0.5164 -7.5991 23 6 -0.7828 1.2974 -6.5226 24 6 -0.0938 3.3442 -2.4532 25 6 0.2568 2.5950 -1.1655 26 1 -0.4219 1.7514 -1.0393 27 6 0.1225 3.5419 0.0287 28 6 -1.3232 4.0323 0.1306 29 1 -0.3634 0.7808 0.6683 30 1 -0.3634 0.1884 -1.0102 31 1 -0.3633 -0.9690 0.3420 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8567 -0.0706 2.9281 35 1 1.1459 0.3434 -2.2864 36 1 2.8413 0.8625 -2.4464 37 1 1.5515 1.2779 -4.5370 38 1 2.1347 2.7959 -3.8126 39 1 -1.4085 3.2389 -4.8613 40 1 0.1607 4.0769 -4.9208 41 1 2.0010 3.1781 -6.2203 42 1 2.6757 1.7795 -8.1314 43 1 1.1314 0.0791 -9.0185 44 1 -1.0839 -0.2292 -7.9885 45 1 -1.7546 1.1624 -6.0711 46 1 0.5673 4.2036 -2.5654 47 1 -1.1281 3.6848 -2.4057 48 1 0.3923 3.0138 0.9432 49 1 0.7868 4.3952 -0.1077 50 1 -1.6111 4.5115 -0.8051 51 1 -1.9816 3.1850 0.3226 52 1 -1.4069 4.7497 0.9469 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255178782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:23 Heat of formation + Delta-G solvation = 29.814249 kcal Electronic energy + Delta-G solvation = -28197.302591 eV Core-core repulsion = 24775.227470 eV Total energy + Delta-G solvation = -3422.075121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.14738 -40.01173 -37.48412 -35.45623 -34.24808 -33.00593 -31.82618 -31.75487 -30.23486 -29.33390 -27.41933 -25.53523 -25.25248 -24.11970 -23.43605 -22.47481 -21.49733 -21.32223 -20.11290 -18.34687 -17.57055 -17.40656 -16.58741 -16.40792 -16.30284 -15.92942 -15.66880 -15.52478 -15.11164 -15.01471 -14.63867 -14.54004 -14.22316 -14.02868 -13.59899 -13.46278 -13.41210 -13.29374 -13.12877 -12.85682 -12.69459 -12.67606 -12.59450 -12.41067 -12.14763 -12.02021 -11.95989 -11.82196 -11.80230 -11.71850 -11.48647 -11.22450 -10.91770 -10.76569 -10.28333 -9.75323 -9.68902 -9.19867 -8.61335 -8.05469 -6.14605 0.45412 0.55616 1.39408 1.41972 1.52996 2.44570 2.78007 3.21442 3.22578 3.39457 3.79582 3.96529 4.02390 4.16942 4.20161 4.25491 4.31905 4.37217 4.43307 4.44381 4.47918 4.51948 4.59219 4.62836 4.65764 4.68981 4.75306 4.77901 4.82417 4.86588 5.01248 5.04066 5.09708 5.11081 5.15498 5.16299 5.21632 5.28411 5.29494 5.35570 5.53135 5.57265 5.60293 5.66814 5.67057 5.74901 5.80813 5.89008 6.09767 6.12653 6.19499 6.37188 6.64291 6.87654 6.99844 7.53879 8.99108 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.004067 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.527807 B = 6883.039049 C = 8050.797884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.219 3.781 4 H 0.024 0.976 5 C -0.508 4.508 6 H 0.045 0.955 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.535 5.535 14 C 0.069 3.931 15 C 0.073 3.927 16 N -0.535 5.535 17 C 0.096 3.904 18 C -0.091 4.091 19 C -0.126 4.126 20 C -0.130 4.130 21 C -0.127 4.127 22 C -0.128 4.128 23 C -0.111 4.111 24 C 0.071 3.929 25 C 0.070 3.930 26 H 0.058 0.942 27 C -0.115 4.115 28 C -0.140 4.140 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.043 0.957 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.259 0.741 35 H 0.031 0.969 36 H 0.052 0.948 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.097 0.903 40 H 0.041 0.959 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.131 0.869 46 H 0.028 0.972 47 H 0.097 0.903 48 H 0.044 0.956 49 H 0.052 0.948 50 H 0.070 0.930 51 H 0.054 0.946 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.660 4.028 -17.058 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.183 4.183 3 C 0.113 3.887 4 H 0.042 0.958 5 C -0.547 4.547 6 H 0.064 0.936 7 C -0.184 4.184 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.260 5.260 14 C -0.060 4.060 15 C -0.056 4.056 16 N -0.259 5.259 17 C -0.031 4.031 18 C -0.091 4.091 19 C -0.144 4.144 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.146 4.146 23 C -0.129 4.129 24 C -0.056 4.056 25 C -0.039 4.039 26 H 0.076 0.924 27 C -0.154 4.154 28 C -0.197 4.197 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.050 0.950 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.043 0.957 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.134 0.866 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.046 0.954 47 H 0.116 0.884 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.089 0.911 51 H 0.073 0.927 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.637 3.968 -16.888 20.350 hybrid contribution 1.518 -0.233 0.661 1.672 sum -9.119 3.735 -16.228 18.985 Atomic orbital electron populations 1.21968 0.96748 1.00207 1.00377 1.22050 0.94070 1.01425 1.00794 1.19186 0.93668 0.88885 0.87008 0.95842 1.21446 0.92835 1.35568 1.04827 0.93621 1.25578 1.01848 0.95419 0.95605 1.70009 1.35997 1.39760 1.10049 0.85621 0.81393 0.77494 0.77767 1.19730 1.20786 1.20808 1.62400 1.21282 1.38362 1.03928 1.21947 0.99376 0.94266 0.90375 1.22097 0.88386 0.98093 0.96974 1.62304 1.22689 1.38044 1.02890 1.21113 1.01684 0.94102 0.86194 1.19838 0.94797 0.97964 0.96539 1.21227 0.96002 1.00330 0.96886 1.21373 1.00464 0.96274 0.96709 1.21458 0.94157 0.98318 1.00607 1.21449 0.97174 0.99676 0.96290 1.21226 1.00097 0.95156 0.96432 1.22224 1.01224 0.93125 0.89062 1.22041 0.90162 0.97260 0.94425 0.92424 1.21562 0.98086 0.98547 0.97179 1.21742 0.94448 1.01079 1.02449 0.93722 0.92464 0.93810 0.95038 0.91850 0.93209 0.95080 0.92952 0.90192 0.95652 0.88498 0.94032 0.86595 0.84742 0.84157 0.84171 0.85127 0.95383 0.88444 0.93710 0.92914 0.91102 0.92692 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 8.10 71.98 0.58 -4.84 16 2 C -0.14 -6.93 4.71 30.59 0.14 -6.79 16 3 C 0.22 10.99 1.74 44.17 0.08 11.06 16 4 H 0.02 1.30 5.22 -2.39 -0.01 1.29 16 5 C -0.51 -28.44 8.23 25.60 0.21 -28.23 16 6 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 7 C 0.01 0.76 5.29 84.65 0.45 1.21 16 8 N -0.92 -52.99 11.30 21.45 0.24 -52.75 16 9 Si 0.95 44.73 29.54 68.60 2.03 46.75 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 N -0.54 -22.80 4.38 -849.66 -3.72 -26.51 16 14 C 0.07 2.75 4.31 86.31 0.37 3.12 16 15 C 0.07 2.36 4.65 86.31 0.40 2.76 16 16 N -0.53 -15.16 4.85 -900.26 -4.37 -19.53 16 17 C 0.10 2.16 5.44 85.56 0.47 2.63 16 18 C -0.09 -2.05 4.13 -19.87 -0.08 -2.13 16 19 C -0.13 -2.80 7.87 22.27 0.18 -2.62 16 20 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 21 C -0.13 -2.27 10.05 22.27 0.22 -2.04 16 22 C -0.13 -2.33 10.05 22.27 0.22 -2.10 16 23 C -0.11 -2.27 9.70 22.27 0.22 -2.05 16 24 C 0.07 2.07 4.49 86.31 0.39 2.46 16 25 C 0.07 2.44 1.47 44.91 0.07 2.51 16 26 H 0.06 2.10 4.03 -2.38 -0.01 2.09 16 27 C -0.12 -3.94 5.17 30.59 0.16 -3.78 16 28 C -0.14 -3.49 9.67 71.98 0.70 -2.79 16 29 H 0.04 1.77 7.19 -2.38 -0.02 1.75 16 30 H 0.06 2.14 5.13 -2.39 -0.01 2.13 16 31 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.03 1.52 6.14 -2.39 -0.01 1.50 16 33 H 0.06 3.48 5.97 -2.38 -0.01 3.47 16 34 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 35 H 0.03 1.28 5.14 -2.39 -0.01 1.26 16 36 H 0.05 2.31 7.68 -2.39 -0.02 2.30 16 37 H 0.08 2.49 5.86 -2.38 -0.01 2.48 16 38 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.10 1.86 8.09 -2.38 -0.02 1.84 16 40 H 0.04 0.93 8.02 -2.39 -0.02 0.91 16 41 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.13 2.13 8.06 -2.91 -0.02 2.10 16 43 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 45 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 46 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.10 2.31 6.48 -2.39 -0.02 2.30 16 48 H 0.04 1.81 5.79 -2.39 -0.01 1.80 16 49 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.07 1.49 6.34 -2.39 -0.02 1.47 16 51 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 52 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -61.48 378.83 0.06 -61.43 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.89 Total: 24.58 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 4.99 Total: -33.97 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -7.85 Total: -98.79 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -61.48 0.06 -61.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255178782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.241 kcal (2) G-P(sol) polarization free energy of solvation -61.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds