Wall clock time and date at job start Tue Mar 31 2020 11:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 H 1.08997 * 109.47298 * 305.64798 * 3 2 1 5 5 C 1.50694 * 109.47292 * 185.64507 * 3 2 1 6 6 H 1.08008 * 120.00400 * 240.00337 * 5 3 2 7 7 C 1.37878 * 120.00240 * 60.00115 * 5 3 2 8 8 N 1.31517 * 119.99785 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00463 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47114 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47364 * 119.99540 * 9 7 5 12 12 H 1.48496 * 109.47354 * 239.99746 * 9 7 5 13 13 N 1.46901 * 109.47170 * 65.64531 * 3 2 1 14 14 C 1.46891 * 111.00095 * 204.11029 * 13 3 2 15 15 H 1.09003 * 108.74169 * 328.18850 * 14 13 3 16 16 C 1.50462 * 108.77353 * 86.49420 * 14 13 3 17 17 C 1.54502 * 108.85188 * 212.95181 * 16 14 13 18 18 C 1.45863 * 111.59716 * 282.80639 * 17 16 14 19 19 N 1.47809 * 112.91945 * 61.32536 * 18 17 16 20 20 C 1.46904 * 110.99998 * 153.87561 * 19 18 17 21 21 C 1.50696 * 109.47137 * 311.97458 * 20 19 18 22 22 C 1.38232 * 119.99814 * 269.72529 * 21 20 19 23 23 C 1.38239 * 119.99947 * 179.81392 * 22 21 20 24 24 C 1.38241 * 120.00039 * 0.39188 * 23 22 21 25 25 C 1.38234 * 119.99735 * 359.86087 * 24 23 22 26 26 C 1.38232 * 120.00069 * 89.99758 * 21 20 19 27 27 C 1.44266 * 109.45627 * 276.74589 * 19 18 17 28 28 C 1.54069 * 111.91557 * 96.47437 * 27 19 18 29 29 H 1.09005 * 109.46915 * 174.20383 * 1 2 3 30 30 H 1.09002 * 109.47410 * 294.20554 * 1 2 3 31 31 H 1.09002 * 109.47350 * 54.20658 * 1 2 3 32 32 H 1.08997 * 109.47818 * 239.99865 * 2 1 3 33 33 H 1.09005 * 109.47225 * 119.99897 * 2 1 3 34 34 H 0.96999 * 120.00265 * 179.97438 * 8 7 5 35 35 H 1.00896 * 111.00103 * 328.06627 * 13 3 2 36 36 H 1.09003 * 109.58033 * 93.13911 * 16 14 13 37 37 H 1.09003 * 109.67730 * 332.82790 * 16 14 13 38 38 H 1.09004 * 109.05987 * 162.26240 * 17 16 14 39 39 H 1.09006 * 109.05489 * 43.35273 * 17 16 14 40 40 H 1.08996 * 108.79276 * 300.44475 * 18 17 16 41 41 H 1.08996 * 108.79617 * 182.20835 * 18 17 16 42 42 H 1.09000 * 109.46615 * 71.97105 * 20 19 18 43 43 H 1.09000 * 109.46722 * 191.97194 * 20 19 18 44 44 H 1.08004 * 120.00308 * 359.97438 * 22 21 20 45 45 H 1.08000 * 120.00277 * 180.23105 * 23 22 21 46 46 H 1.07995 * 120.00067 * 179.83429 * 24 23 22 47 47 H 1.08003 * 120.00403 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.00130 * 359.97438 * 26 21 20 49 49 H 1.09000 * 108.97984 * 217.07723 * 27 19 18 50 50 H 1.09003 * 108.98176 * 335.87576 * 27 19 18 51 51 H 1.09009 * 108.91426 * 79.59509 * 28 27 19 52 52 H 1.09003 * 108.91903 * 198.14072 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5404 1.4449 -0.1398 6 1 4.1540 1.8865 0.6316 7 6 4.1301 0.8832 -1.2523 8 7 3.3830 0.3449 -2.1914 9 14 5.9900 0.8854 -1.4253 10 1 6.5964 1.5461 -0.2416 11 1 6.4803 -0.5133 -1.5172 12 1 6.3720 1.6256 -2.6546 13 7 1.6647 2.0946 1.2617 14 6 1.6047 3.5536 1.1028 15 1 2.3419 3.8555 0.3587 16 6 0.2348 3.9309 0.6078 17 6 0.3587 5.1672 -0.3105 18 6 0.5396 6.3924 0.4600 19 7 1.7711 6.3818 1.2774 20 6 2.2487 7.7483 1.5275 21 6 2.2660 8.5192 0.2327 22 6 3.4013 8.5202 -0.5559 23 6 3.4159 9.2242 -1.7455 24 6 2.2980 9.9338 -2.1425 25 6 1.1645 9.9371 -1.3513 26 6 1.1486 9.2299 -0.1635 27 6 1.5194 5.6872 2.5166 28 6 1.9632 4.2133 2.4500 29 1 -0.3633 -1.0225 -0.1038 30 1 -0.3634 0.4214 0.9373 31 1 -0.3634 0.6010 -0.8336 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7978 -0.0500 -2.9743 35 1 0.7896 1.7325 1.6096 36 1 -0.4073 4.1688 1.4558 37 1 -0.1942 3.1006 0.0467 38 1 -0.5458 5.2556 -0.9124 39 1 1.2139 5.0340 -0.9732 40 1 -0.3184 6.5222 1.1196 41 1 0.5821 7.2368 -0.2278 42 1 1.5829 8.2420 2.2354 43 1 3.2563 7.7109 1.9416 44 1 4.2761 7.9688 -0.2440 45 1 4.3016 9.2219 -2.3635 46 1 2.3103 10.4860 -3.0705 47 1 0.2911 10.4918 -1.6611 48 1 0.2630 9.2324 0.4546 49 1 2.0635 6.1853 3.3190 50 1 0.4521 5.7265 2.7346 51 1 3.0427 4.1625 2.5932 52 1 1.4757 3.6608 3.2532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255388791.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:30 Heat of formation + Delta-G solvation = 29.717138 kcal Electronic energy + Delta-G solvation = -27662.255536 eV Core-core repulsion = 24240.176205 eV Total energy + Delta-G solvation = -3422.079332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.02985 -38.58015 -36.43335 -34.02808 -32.38690 -31.94046 -31.25263 -30.96860 -29.14994 -27.00306 -25.95630 -24.53638 -23.59640 -22.67313 -22.32101 -21.37185 -20.17175 -19.43524 -18.94813 -16.85429 -16.14996 -16.06561 -15.60949 -15.32178 -14.86061 -14.77863 -14.45596 -14.05432 -13.78776 -13.62439 -13.42311 -13.18742 -12.86439 -12.70477 -12.58820 -12.34975 -12.23299 -12.07312 -11.73955 -11.44239 -11.15846 -11.07825 -10.92230 -10.84129 -10.68961 -10.62020 -10.51301 -10.45501 -10.13705 -9.86253 -9.83901 -9.59168 -9.33849 -8.94705 -8.90949 -8.78252 -8.25262 -8.10175 -7.02120 -5.86565 -3.89323 1.24013 1.33468 3.37578 3.45233 3.51174 3.62505 4.18298 4.53772 4.64347 4.74927 4.91711 4.99241 5.05951 5.14546 5.18442 5.39035 5.41318 5.44262 5.47770 5.53272 5.58407 5.61944 5.62512 5.81996 5.90451 5.92300 5.97617 6.07705 6.17165 6.19863 6.22131 6.23693 6.34337 6.36812 6.44643 6.45933 6.47722 6.56212 6.66413 6.67415 6.91669 6.92549 6.99481 7.05280 7.20544 7.22180 7.32589 7.36761 7.66184 7.89242 8.04987 8.49013 8.53658 8.94002 9.19667 9.75279 11.18824 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003961 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.385142 B = 7067.627898 C = 8203.609986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.221 3.779 4 H 0.001 0.999 5 C -0.485 4.485 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.689 5.689 14 C 0.103 3.897 15 H 0.085 0.915 16 C -0.138 4.138 17 C -0.113 4.113 18 C 0.048 3.952 19 N -0.517 5.517 20 C 0.094 3.906 21 C -0.078 4.078 22 C -0.095 4.095 23 C -0.120 4.120 24 C -0.122 4.122 25 C -0.125 4.125 26 C -0.116 4.116 27 C 0.058 3.942 28 C -0.091 4.091 29 H 0.035 0.965 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.098 0.902 33 H 0.039 0.961 34 H 0.257 0.743 35 H 0.313 0.687 36 H 0.048 0.952 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.027 0.973 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.084 0.916 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.058 0.942 50 H 0.035 0.965 51 H 0.063 0.937 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 17.534 4.771 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C 0.114 3.886 4 H 0.019 0.981 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.319 5.319 14 C -0.008 4.008 15 H 0.104 0.896 16 C -0.177 4.177 17 C -0.151 4.151 18 C -0.079 4.079 19 N -0.241 5.241 20 C -0.033 4.033 21 C -0.078 4.078 22 C -0.114 4.114 23 C -0.138 4.138 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.134 4.134 27 C -0.071 4.071 28 C -0.130 4.130 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.130 0.870 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.045 0.955 41 H 0.096 0.904 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.076 0.924 50 H 0.054 0.946 51 H 0.081 0.919 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.367 17.165 4.605 18.565 hybrid contribution -0.531 0.400 -0.351 0.752 sum -5.898 17.565 4.253 19.011 Atomic orbital electron populations 1.21876 0.99768 0.99513 0.99430 1.21765 0.91095 1.00707 1.02868 1.19117 0.95207 0.89630 0.84651 0.98099 1.21264 0.91448 1.35705 1.03951 0.92141 1.24937 0.97817 0.95873 0.95957 1.69886 1.34395 1.39992 1.09601 0.86546 0.86249 0.77433 0.77805 1.19812 1.21299 1.21355 1.60742 1.35151 1.02822 1.33217 1.21099 0.94817 0.88625 0.96242 0.89643 1.22136 0.99466 0.97620 0.98448 1.20506 1.01698 0.94509 0.98418 1.21268 0.89636 0.99730 0.97229 1.61733 1.31654 1.13414 1.17314 1.21195 1.01069 0.88029 0.93048 1.19776 0.93957 0.97247 0.96857 1.21106 0.98195 0.97825 0.94233 1.21194 0.98521 0.97416 0.96656 1.21139 0.93566 0.99722 0.99624 1.21076 0.98268 0.99872 0.95058 1.21025 0.97732 0.97565 0.97122 1.21992 0.98811 0.96063 0.90264 1.21857 1.01458 0.91837 0.97881 0.94585 0.94658 0.94000 0.88409 0.94236 0.93340 0.87017 0.93286 0.92129 0.92588 0.90902 0.95476 0.90447 0.94389 0.89774 0.85620 0.86051 0.86322 0.86303 0.86475 0.92373 0.94645 0.91851 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.64 37.15 0.36 -2.57 16 2 C -0.13 -3.01 5.37 -26.73 -0.14 -3.16 16 3 C 0.22 5.54 1.66 -68.86 -0.11 5.42 16 4 H 0.00 0.04 7.44 -51.93 -0.39 -0.35 16 5 C -0.48 -13.57 8.44 -34.44 -0.29 -13.86 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.95 11.29 55.43 0.63 -25.32 16 9 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 N -0.69 -14.69 5.92 -101.62 -0.60 -15.29 16 14 C 0.10 1.94 1.93 -68.34 -0.13 1.81 16 15 H 0.09 1.94 6.76 -51.93 -0.35 1.59 16 16 C -0.14 -2.28 4.80 -27.21 -0.13 -2.41 16 17 C -0.11 -1.74 5.53 -29.32 -0.16 -1.90 16 18 C 0.05 0.64 4.65 -6.70 -0.03 0.61 16 19 N -0.52 -7.05 4.36 -241.00 -1.05 -8.10 16 20 C 0.09 1.07 5.07 -4.98 -0.03 1.05 16 21 C -0.08 -0.90 4.39 -104.63 -0.46 -1.36 16 22 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 23 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 24 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 25 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 26 C -0.12 -1.22 7.39 -39.58 -0.29 -1.51 16 27 C 0.06 0.77 5.14 -4.67 -0.02 0.74 16 28 C -0.09 -1.48 5.73 -25.53 -0.15 -1.62 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.03 0.62 6.66 -51.93 -0.35 0.28 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 33 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.31 6.17 6.26 -39.29 -0.25 5.92 16 36 H 0.05 0.74 7.15 -51.93 -0.37 0.37 16 37 H 0.06 1.10 7.46 -51.93 -0.39 0.71 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 1.32 7.59 -51.93 -0.39 0.92 16 40 H 0.03 0.34 7.24 -51.93 -0.38 -0.04 16 41 H 0.08 1.00 4.20 -51.93 -0.22 0.78 16 42 H 0.04 0.39 8.01 -51.93 -0.42 -0.03 16 43 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 44 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 48 H 0.12 1.07 8.03 -52.49 -0.42 0.65 16 49 H 0.06 0.68 7.58 -51.93 -0.39 0.29 16 50 H 0.04 0.45 6.50 -51.93 -0.34 0.11 16 51 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 52 H 0.06 0.88 8.12 -51.93 -0.42 0.45 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -29.13 389.38 -12.59 -41.72 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -9.15 Total: 8.01 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -3.26 Total: -23.82 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -1.02 Total: -48.72 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.13 -12.59 -41.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255388791.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.433 kcal (2) G-P(sol) polarization free energy of solvation -29.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds