Wall clock time and date at job start Tue Mar 31 2020 11:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47155 * 2 1 4 4 H 1.08997 * 109.47298 * 305.64798 * 3 2 1 5 5 C 1.50694 * 109.47292 * 185.64507 * 3 2 1 6 6 H 1.08008 * 120.00400 * 240.00337 * 5 3 2 7 7 C 1.37878 * 120.00240 * 60.00115 * 5 3 2 8 8 N 1.31517 * 119.99785 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00463 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47114 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47364 * 119.99540 * 9 7 5 12 12 H 1.48496 * 109.47354 * 239.99746 * 9 7 5 13 13 N 1.46901 * 109.47170 * 65.64531 * 3 2 1 14 14 C 1.46891 * 111.00095 * 204.11029 * 13 3 2 15 15 H 1.09003 * 108.74169 * 328.18850 * 14 13 3 16 16 C 1.50462 * 108.77353 * 86.49420 * 14 13 3 17 17 C 1.54502 * 108.85188 * 212.95181 * 16 14 13 18 18 C 1.45863 * 111.59716 * 282.80639 * 17 16 14 19 19 N 1.47809 * 112.91945 * 61.32536 * 18 17 16 20 20 C 1.46904 * 110.99998 * 153.87561 * 19 18 17 21 21 C 1.50696 * 109.47137 * 311.97458 * 20 19 18 22 22 C 1.38232 * 119.99814 * 269.72529 * 21 20 19 23 23 C 1.38239 * 119.99947 * 179.81392 * 22 21 20 24 24 C 1.38241 * 120.00039 * 0.39188 * 23 22 21 25 25 C 1.38234 * 119.99735 * 359.86087 * 24 23 22 26 26 C 1.38232 * 120.00069 * 89.99758 * 21 20 19 27 27 C 1.44266 * 109.45627 * 276.74589 * 19 18 17 28 28 C 1.54069 * 111.91557 * 96.47437 * 27 19 18 29 29 H 1.09005 * 109.46915 * 174.20383 * 1 2 3 30 30 H 1.09002 * 109.47410 * 294.20554 * 1 2 3 31 31 H 1.09002 * 109.47350 * 54.20658 * 1 2 3 32 32 H 1.08997 * 109.47818 * 239.99865 * 2 1 3 33 33 H 1.09005 * 109.47225 * 119.99897 * 2 1 3 34 34 H 0.96999 * 120.00265 * 179.97438 * 8 7 5 35 35 H 1.00896 * 111.00103 * 328.06627 * 13 3 2 36 36 H 1.09003 * 109.58033 * 93.13911 * 16 14 13 37 37 H 1.09003 * 109.67730 * 332.82790 * 16 14 13 38 38 H 1.09004 * 109.05987 * 162.26240 * 17 16 14 39 39 H 1.09006 * 109.05489 * 43.35273 * 17 16 14 40 40 H 1.08996 * 108.79276 * 300.44475 * 18 17 16 41 41 H 1.08996 * 108.79617 * 182.20835 * 18 17 16 42 42 H 1.09000 * 109.46615 * 71.97105 * 20 19 18 43 43 H 1.09000 * 109.46722 * 191.97194 * 20 19 18 44 44 H 1.08004 * 120.00308 * 359.97438 * 22 21 20 45 45 H 1.08000 * 120.00277 * 180.23105 * 23 22 21 46 46 H 1.07995 * 120.00067 * 179.83429 * 24 23 22 47 47 H 1.08003 * 120.00403 * 179.97438 * 25 24 23 48 48 H 1.07999 * 120.00130 * 359.97438 * 26 21 20 49 49 H 1.09000 * 108.97984 * 217.07723 * 27 19 18 50 50 H 1.09003 * 108.98176 * 335.87576 * 27 19 18 51 51 H 1.09009 * 108.91426 * 79.59509 * 28 27 19 52 52 H 1.09003 * 108.91903 * 198.14072 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5404 1.4449 -0.1398 6 1 4.1540 1.8865 0.6316 7 6 4.1301 0.8832 -1.2523 8 7 3.3830 0.3449 -2.1914 9 14 5.9900 0.8854 -1.4253 10 1 6.5964 1.5461 -0.2416 11 1 6.4803 -0.5133 -1.5172 12 1 6.3720 1.6256 -2.6546 13 7 1.6647 2.0946 1.2617 14 6 1.6047 3.5536 1.1028 15 1 2.3419 3.8555 0.3587 16 6 0.2348 3.9309 0.6078 17 6 0.3587 5.1672 -0.3105 18 6 0.5396 6.3924 0.4600 19 7 1.7711 6.3818 1.2774 20 6 2.2487 7.7483 1.5275 21 6 2.2660 8.5192 0.2327 22 6 3.4013 8.5202 -0.5559 23 6 3.4159 9.2242 -1.7455 24 6 2.2980 9.9338 -2.1425 25 6 1.1645 9.9371 -1.3513 26 6 1.1486 9.2299 -0.1635 27 6 1.5194 5.6872 2.5166 28 6 1.9632 4.2133 2.4500 29 1 -0.3633 -1.0225 -0.1038 30 1 -0.3634 0.4214 0.9373 31 1 -0.3634 0.6010 -0.8336 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.7978 -0.0500 -2.9743 35 1 0.7896 1.7325 1.6096 36 1 -0.4073 4.1688 1.4558 37 1 -0.1942 3.1006 0.0467 38 1 -0.5458 5.2556 -0.9124 39 1 1.2139 5.0340 -0.9732 40 1 -0.3184 6.5222 1.1196 41 1 0.5821 7.2368 -0.2278 42 1 1.5829 8.2420 2.2354 43 1 3.2563 7.7109 1.9416 44 1 4.2761 7.9688 -0.2440 45 1 4.3016 9.2219 -2.3635 46 1 2.3103 10.4860 -3.0705 47 1 0.2911 10.4918 -1.6611 48 1 0.2630 9.2324 0.4546 49 1 2.0635 6.1853 3.3190 50 1 0.4521 5.7265 2.7346 51 1 3.0427 4.1625 2.5932 52 1 1.4757 3.6608 3.2532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255388791.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:28 Heat of formation + Delta-G solvation = 13.680040 kcal Electronic energy + Delta-G solvation = -27662.950957 eV Core-core repulsion = 24240.176205 eV Total energy + Delta-G solvation = -3422.774752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01572 -39.69612 -37.98558 -35.55550 -33.93811 -33.42492 -32.57921 -31.78131 -30.59558 -28.52846 -27.52733 -25.66973 -25.12028 -24.02731 -23.48208 -22.28615 -21.55539 -21.10121 -20.34099 -18.29212 -17.67757 -17.18852 -16.79289 -16.61162 -16.22375 -15.98807 -15.81745 -15.52968 -15.23555 -14.92163 -14.51603 -14.29663 -14.26286 -14.14920 -13.75789 -13.67162 -13.43638 -13.28891 -13.12900 -12.99184 -12.85619 -12.64248 -12.50870 -12.11404 -11.99812 -11.93013 -11.90399 -11.85438 -11.69983 -11.51905 -11.45947 -11.23462 -11.07073 -10.86834 -10.40775 -9.76376 -9.63397 -9.10347 -8.82504 -8.03802 -6.14698 0.42716 0.51976 1.38106 1.39773 1.52037 2.44874 2.76760 3.20852 3.21586 3.62635 3.80878 3.94384 4.00130 4.07335 4.17611 4.22160 4.28729 4.34164 4.38714 4.40409 4.51434 4.58340 4.59264 4.64455 4.68810 4.72186 4.73040 4.82532 4.83716 4.87968 4.93544 5.03418 5.12814 5.13434 5.16185 5.19062 5.26550 5.33929 5.34981 5.40500 5.51763 5.56932 5.61711 5.64614 5.69326 5.73252 5.82244 5.96566 6.12604 6.22471 6.34058 6.43073 6.63949 7.00918 7.15368 7.54315 8.99116 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003961 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.385142 B = 7067.627898 C = 8203.609986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.121 4.121 3 C 0.233 3.767 4 H -0.035 1.035 5 C -0.504 4.504 6 H 0.043 0.957 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.950 3.050 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.283 1.283 13 N -0.691 5.691 14 C 0.110 3.890 15 H 0.037 0.963 16 C -0.129 4.129 17 C -0.106 4.106 18 C 0.052 3.948 19 N -0.542 5.542 20 C 0.098 3.902 21 C -0.090 4.090 22 C -0.119 4.119 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.120 4.120 27 C 0.065 3.935 28 C -0.086 4.086 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.034 0.966 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.258 0.742 35 H 0.325 0.675 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.059 0.941 43 H 0.081 0.919 44 H 0.115 0.885 45 H 0.130 0.870 46 H 0.140 0.860 47 H 0.144 0.856 48 H 0.135 0.865 49 H 0.077 0.923 50 H 0.053 0.947 51 H 0.040 0.960 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.037 19.080 5.905 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.160 4.160 3 C 0.124 3.876 4 H -0.017 1.017 5 C -0.543 4.543 6 H 0.061 0.939 7 C -0.188 4.188 8 N -0.561 5.561 9 Si 0.776 3.224 10 H -0.198 1.198 11 H -0.204 1.204 12 H -0.209 1.209 13 N -0.322 5.322 14 C 0.000 4.000 15 H 0.055 0.945 16 C -0.168 4.168 17 C -0.145 4.145 18 C -0.074 4.074 19 N -0.266 5.266 20 C -0.029 4.029 21 C -0.090 4.090 22 C -0.137 4.137 23 C -0.152 4.152 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.138 4.138 27 C -0.064 4.064 28 C -0.125 4.125 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.143 0.857 36 H 0.094 0.906 37 H 0.060 0.940 38 H 0.090 0.910 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.134 0.866 45 H 0.148 0.852 46 H 0.158 0.842 47 H 0.162 0.838 48 H 0.153 0.847 49 H 0.096 0.904 50 H 0.071 0.929 51 H 0.058 0.942 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.980 18.723 5.751 20.793 hybrid contribution -0.002 -0.063 -0.743 0.746 sum -6.982 18.660 5.007 20.543 Atomic orbital electron populations 1.21725 0.96258 1.00944 1.00406 1.21590 0.94253 0.99236 1.00937 1.18811 0.93494 0.90258 0.84990 1.01738 1.21493 0.93146 1.35806 1.03821 0.93857 1.25625 1.01940 0.95563 0.95674 1.70009 1.35911 1.40327 1.09876 0.85626 0.81353 0.77700 0.77676 1.19758 1.20382 1.20882 1.60673 1.36000 1.04353 1.31192 1.21031 0.95015 0.87189 0.96787 0.94469 1.21994 0.98010 0.97548 0.99250 1.20458 1.00727 0.95201 0.98086 1.21180 0.90295 0.98428 0.97516 1.61590 1.32154 1.15098 1.17781 1.21177 1.01301 0.86905 0.93493 1.19874 0.94296 0.97830 0.97015 1.21213 0.98499 0.98763 0.95255 1.21410 0.99535 0.97642 0.96571 1.21457 0.93273 0.99410 1.00478 1.21432 0.98951 0.99471 0.94640 1.21254 0.97818 0.97135 0.97586 1.21896 0.99991 0.93805 0.90740 1.21793 1.00191 0.94330 0.96154 0.92551 0.92294 0.94693 0.91657 0.94699 0.93243 0.85714 0.90560 0.93975 0.91030 0.94852 0.93351 0.89878 0.92319 0.90047 0.86645 0.85205 0.84249 0.83836 0.84698 0.90414 0.92905 0.94156 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.25 9.64 71.98 0.69 -4.55 16 2 C -0.12 -5.93 5.37 30.59 0.16 -5.77 16 3 C 0.23 12.11 1.66 44.17 0.07 12.18 16 4 H -0.03 -2.04 7.44 -2.39 -0.02 -2.06 16 5 C -0.50 -29.40 8.44 25.60 0.22 -29.19 16 6 H 0.04 2.61 7.81 -2.91 -0.02 2.59 16 7 C 0.01 0.55 5.29 84.65 0.45 1.00 16 8 N -0.92 -54.83 11.29 21.45 0.24 -54.58 16 9 Si 0.95 46.21 29.54 68.60 2.03 48.23 16 10 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 12 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 13 N -0.69 -30.02 5.92 -475.41 -2.81 -32.83 16 14 C 0.11 4.24 1.93 44.51 0.09 4.33 16 15 H 0.04 1.79 6.76 -2.39 -0.02 1.78 16 16 C -0.13 -4.21 4.80 30.28 0.15 -4.07 16 17 C -0.11 -3.25 5.53 28.92 0.16 -3.09 16 18 C 0.05 1.31 4.65 83.94 0.39 1.70 16 19 N -0.54 -14.17 4.36 -916.39 -3.99 -18.16 16 20 C 0.10 2.09 5.07 85.55 0.43 2.53 16 21 C -0.09 -2.00 4.39 -19.87 -0.09 -2.08 16 22 C -0.12 -2.88 9.70 22.27 0.22 -2.66 16 23 C -0.13 -2.90 10.05 22.27 0.22 -2.67 16 24 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 25 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 26 C -0.12 -2.25 7.39 22.27 0.16 -2.09 16 27 C 0.06 1.57 5.14 87.16 0.45 2.02 16 28 C -0.09 -2.72 5.73 31.37 0.18 -2.54 16 29 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.06 1.98 6.66 -2.39 -0.02 1.96 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.06 3.63 5.94 -2.39 -0.01 3.62 16 33 H 0.03 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.32 12.59 6.26 -89.70 -0.56 12.03 16 36 H 0.08 2.08 7.15 -2.39 -0.02 2.07 16 37 H 0.04 1.52 7.46 -2.39 -0.02 1.50 16 38 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.03 1.27 7.59 -2.38 -0.02 1.25 16 40 H 0.05 1.03 7.24 -2.39 -0.02 1.01 16 41 H 0.08 2.00 4.20 -2.39 -0.01 1.99 16 42 H 0.06 1.02 8.01 -2.39 -0.02 1.00 16 43 H 0.08 1.75 8.08 -2.39 -0.02 1.73 16 44 H 0.12 2.89 8.06 -2.91 -0.02 2.87 16 45 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 46 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 47 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 48 H 0.14 2.01 8.03 -2.91 -0.02 1.99 16 49 H 0.08 1.61 7.58 -2.39 -0.02 1.59 16 50 H 0.05 1.13 6.50 -2.39 -0.02 1.11 16 51 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 52 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 Total: -1.00 -66.04 389.38 0.18 -65.85 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.32 Total: 30.60 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 4.40 Total: -39.11 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -6.56 Total: -105.57 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -66.04 0.18 -65.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255388791.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.533 kcal (2) G-P(sol) polarization free energy of solvation -66.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds