Wall clock time and date at job start Tue Mar 31 2020 11:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46885 * 2 1 4 4 H 1.08996 * 109.47014 * 177.53966 * 3 2 1 5 5 C 1.50702 * 109.47344 * 57.53746 * 3 2 1 6 6 H 1.07995 * 120.00219 * 239.99178 * 5 3 2 7 7 C 1.37877 * 119.99567 * 59.99951 * 5 3 2 8 8 N 1.31515 * 120.00090 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99811 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47505 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47474 * 120.00093 * 9 7 5 12 12 H 1.48504 * 109.47341 * 240.00110 * 9 7 5 13 13 N 1.46906 * 109.47347 * 297.53812 * 3 2 1 14 14 C 1.46902 * 111.00000 * 274.30334 * 13 3 2 15 15 H 1.09000 * 108.96427 * 35.32051 * 14 13 3 16 16 C 1.54513 * 109.03941 * 276.40985 * 14 13 3 17 17 C 1.50537 * 108.85444 * 162.17385 * 16 14 13 18 18 C 1.53914 * 112.93370 * 91.76069 * 17 16 14 19 19 N 1.47947 * 113.33021 * 317.75660 * 18 17 16 20 20 C 1.46900 * 111.00004 * 192.18257 * 19 18 17 21 21 C 1.50693 * 109.47340 * 66.04424 * 20 19 18 22 22 C 1.38238 * 119.99771 * 269.72782 * 21 20 19 23 23 C 1.38239 * 120.00012 * 179.76961 * 22 21 20 24 24 C 1.38241 * 119.99566 * 0.48153 * 23 22 21 25 25 C 1.38230 * 120.00243 * 359.79368 * 24 23 22 26 26 C 1.38232 * 120.00102 * 90.00091 * 21 20 19 27 27 C 1.44305 * 113.65221 * 318.13744 * 19 18 17 28 28 C 1.45878 * 109.03652 * 154.23128 * 14 13 3 29 29 H 1.08999 * 109.46845 * 54.54942 * 1 2 3 30 30 H 1.08996 * 109.46918 * 174.54696 * 1 2 3 31 31 H 1.09006 * 109.46611 * 294.54849 * 1 2 3 32 32 H 1.09004 * 109.46718 * 240.00176 * 2 1 3 33 33 H 1.08993 * 109.46910 * 120.00030 * 2 1 3 34 34 H 0.97001 * 119.99773 * 179.97438 * 8 7 5 35 35 H 1.00894 * 111.00176 * 150.34920 * 13 3 2 36 36 H 1.09004 * 109.56779 * 281.98430 * 16 14 13 37 37 H 1.08994 * 109.57561 * 42.35609 * 16 14 13 38 38 H 1.09001 * 108.78420 * 212.64802 * 17 16 14 39 39 H 1.09000 * 108.79137 * 330.86521 * 17 16 14 40 40 H 1.08996 * 108.71472 * 78.75151 * 18 17 16 41 41 H 1.08999 * 108.70974 * 196.76302 * 18 17 16 42 42 H 1.09002 * 109.46915 * 186.04551 * 20 19 18 43 43 H 1.09000 * 109.46959 * 306.04111 * 20 19 18 44 44 H 1.08000 * 120.00234 * 359.97438 * 22 21 20 45 45 H 1.07998 * 120.00467 * 180.25256 * 23 22 21 46 46 H 1.08001 * 120.00029 * 179.77125 * 24 23 22 47 47 H 1.07998 * 120.00315 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.00480 * 0.02562 * 26 21 20 49 49 H 1.09003 * 109.69511 * 335.67985 * 27 19 18 50 50 H 1.09011 * 109.69407 * 215.09804 * 27 19 18 51 51 H 1.09003 * 108.84695 * 302.88139 * 28 14 13 52 52 H 1.08999 * 108.84594 * 61.24201 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 0.0441 5 6 1.4885 2.1703 1.1988 6 1 0.8725 3.0468 1.0621 7 6 1.7705 1.7173 2.4701 8 7 2.5204 0.6498 2.6366 9 14 1.0874 2.6199 3.9561 10 1 0.2807 3.7811 3.5023 11 1 0.2299 1.6984 4.7439 12 1 2.2092 3.0981 4.8036 13 7 1.5995 2.1177 -1.2281 14 6 2.5377 1.8693 -2.3309 15 1 2.9298 0.8562 -2.2411 16 6 3.7081 2.8732 -2.2328 17 6 4.8584 2.3615 -3.0581 18 6 4.8392 2.8870 -4.5046 19 7 3.4897 2.8846 -5.1110 20 6 3.5632 3.1146 -6.5601 21 6 4.2546 1.9491 -7.2192 22 6 5.6268 1.9639 -7.3863 23 6 6.2616 0.8927 -7.9867 24 6 5.5230 -0.1889 -8.4290 25 6 4.1503 -0.2012 -8.2671 26 6 3.5161 0.8677 -7.6620 27 6 2.7237 1.6983 -4.8140 28 6 1.8259 1.9934 -3.5982 29 1 -0.3633 0.5960 -0.8372 30 1 -0.3633 -1.0230 -0.0977 31 1 -0.3633 0.4270 0.9349 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.7191 0.3314 3.5310 35 1 1.4777 3.1071 -1.0730 36 1 3.3893 3.8439 -2.6127 37 1 4.0196 2.9705 -1.1928 38 1 5.7923 2.6668 -2.5860 39 1 4.8181 1.2725 -3.0796 40 1 5.2237 3.9069 -4.5113 41 1 5.4964 2.2644 -5.1116 42 1 2.5556 3.2149 -6.9636 43 1 4.1252 4.0280 -6.7549 44 1 6.2032 2.8109 -7.0447 45 1 7.3340 0.9024 -8.1135 46 1 6.0185 -1.0242 -8.9014 47 1 3.5732 -1.0460 -8.6131 48 1 2.4435 0.8583 -7.5359 49 1 3.3981 0.8742 -4.5812 50 1 2.1050 1.4360 -5.6723 51 1 0.9883 1.2958 -3.6014 52 1 1.4369 3.0078 -3.6857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255388792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:33 Heat of formation + Delta-G solvation = 23.283471 kcal Electronic energy + Delta-G solvation = -27440.437028 eV Core-core repulsion = 24018.078711 eV Total energy + Delta-G solvation = -3422.358316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17049 -38.60340 -36.44104 -34.23645 -32.42852 -31.65818 -31.05098 -30.95724 -29.39277 -26.88375 -25.94294 -24.62606 -23.71532 -23.00676 -22.53716 -21.47546 -20.01968 -19.46891 -18.84830 -16.92118 -16.44624 -15.99422 -15.76965 -15.43752 -15.04772 -14.73873 -14.51910 -13.91943 -13.81187 -13.68233 -13.54849 -13.09842 -12.91254 -12.79846 -12.63154 -12.54946 -11.93142 -11.84538 -11.60856 -11.49643 -11.32487 -11.29308 -11.06891 -10.91734 -10.87541 -10.61365 -10.52717 -10.36939 -10.07474 -10.03334 -9.77628 -9.57386 -9.29593 -9.10763 -8.98112 -8.69574 -8.42008 -8.12778 -7.07994 -5.96893 -4.01287 1.12129 1.18325 3.30880 3.39260 3.43213 3.53626 4.02571 4.44451 4.60440 4.60871 4.78487 4.88094 4.93998 5.09200 5.14271 5.20991 5.29257 5.33962 5.36074 5.41620 5.49906 5.59641 5.61247 5.79362 5.81565 5.84204 5.94501 5.97625 6.07361 6.19952 6.23833 6.27351 6.29760 6.37997 6.43175 6.58752 6.59761 6.66580 6.77360 6.78703 6.85190 6.91935 6.97808 7.12901 7.30243 7.32903 7.44411 7.58624 7.80824 7.86964 7.93521 8.34234 8.51045 8.78957 9.10384 9.63336 11.09192 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024506 B = 0.002801 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.288864 B = 9993.262499 C =10252.325450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.509 4.509 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.890 5.890 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.683 5.683 14 C 0.094 3.906 15 H 0.059 0.941 16 C -0.139 4.139 17 C -0.114 4.114 18 C 0.058 3.942 19 N -0.530 5.530 20 C 0.095 3.905 21 C -0.118 4.118 22 C -0.110 4.110 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.121 4.121 26 C -0.109 4.109 27 C 0.064 3.936 28 C -0.097 4.097 29 H 0.047 0.953 30 H 0.010 0.990 31 H 0.051 0.949 32 H 0.008 0.992 33 H 0.083 0.917 34 H 0.258 0.742 35 H 0.330 0.670 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.037 0.963 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.122 0.878 49 H 0.040 0.960 50 H 0.064 0.936 51 H 0.063 0.937 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 1.418 -21.564 22.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.139 4.139 3 C 0.109 3.891 4 H 0.018 0.982 5 C -0.547 4.547 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.529 5.529 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.313 5.313 14 C -0.017 4.017 15 H 0.077 0.923 16 C -0.179 4.179 17 C -0.153 4.153 18 C -0.069 4.069 19 N -0.253 5.253 20 C -0.033 4.033 21 C -0.120 4.120 22 C -0.129 4.129 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.139 4.139 26 C -0.128 4.128 27 C -0.065 4.065 28 C -0.136 4.136 29 H 0.066 0.934 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.101 0.899 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.059 0.941 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.114 1.173 -21.335 21.971 hybrid contribution 1.036 0.141 0.836 1.339 sum 6.150 1.314 -20.499 21.442 Atomic orbital electron populations 1.21434 0.97602 0.96968 1.01535 1.21421 0.95018 0.98476 0.99025 1.19086 0.93313 0.91404 0.85285 0.98193 1.21253 1.31242 1.11782 0.90453 0.92376 1.24879 0.95193 0.95033 0.98795 1.69906 1.37815 1.23274 1.21885 0.86567 0.78753 0.79834 0.83008 1.19797 1.21090 1.21253 1.60863 1.47070 1.15873 1.07449 1.20477 0.91091 0.97620 0.92478 0.92298 1.22033 0.96106 1.00297 0.99416 1.21307 0.99434 1.00610 0.93902 1.22496 0.88779 1.00577 0.95027 1.61174 1.16538 1.39195 1.08347 1.21297 1.00376 0.94620 0.87011 1.20794 0.94462 0.97940 0.98803 1.21087 0.94136 0.98706 0.98949 1.21153 0.99793 0.94173 0.98922 1.21148 0.94282 0.98388 1.00318 1.21172 0.94812 0.98463 0.99423 1.21144 0.99862 0.93647 0.98121 1.21851 0.95925 0.90523 0.98192 1.20435 0.97790 1.02503 0.92871 0.93438 0.97053 0.93017 0.97376 0.89893 0.93156 0.85278 0.91467 0.91791 0.92080 0.92612 0.91555 0.94503 0.89831 0.90196 0.86223 0.86256 0.86305 0.86149 0.86012 0.94136 0.91769 0.91811 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.45 37.16 0.35 -2.35 16 2 C -0.10 -2.47 5.55 -26.73 -0.15 -2.62 16 3 C 0.22 5.35 2.00 -68.86 -0.14 5.21 16 4 H 0.00 0.01 7.07 -51.93 -0.37 -0.35 16 5 C -0.51 -13.63 7.31 -34.44 -0.25 -13.88 16 6 H 0.06 1.56 7.61 -52.49 -0.40 1.16 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -25.29 11.34 55.43 0.63 -24.66 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 N -0.68 -14.19 5.22 -103.68 -0.54 -14.73 16 14 C 0.09 1.66 1.84 -70.29 -0.13 1.53 16 15 H 0.06 1.16 6.55 -51.93 -0.34 0.82 16 16 C -0.14 -2.28 4.87 -27.17 -0.13 -2.42 16 17 C -0.11 -1.61 5.27 -27.49 -0.14 -1.75 16 18 C 0.06 0.70 5.27 -2.77 -0.01 0.68 16 19 N -0.53 -6.28 4.18 -236.07 -0.99 -7.27 16 20 C 0.09 0.92 5.33 -4.98 -0.03 0.90 16 21 C -0.12 -1.17 4.37 -104.63 -0.46 -1.63 16 22 C -0.11 -1.05 7.85 -39.58 -0.31 -1.36 16 23 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 26 C -0.11 -1.06 8.57 -39.58 -0.34 -1.40 16 27 C 0.06 0.82 4.35 -4.70 -0.02 0.80 16 28 C -0.10 -1.48 4.89 -29.59 -0.14 -1.62 16 29 H 0.05 1.05 7.52 -51.93 -0.39 0.66 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 1.27 7.36 -51.93 -0.38 0.88 16 32 H 0.01 0.18 7.43 -51.93 -0.39 -0.21 16 33 H 0.08 2.26 6.14 -51.93 -0.32 1.94 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.33 6.88 7.97 -39.29 -0.31 6.57 16 36 H 0.07 1.08 7.78 -51.93 -0.40 0.67 16 37 H 0.06 1.21 7.27 -51.93 -0.38 0.84 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.84 6.66 -51.93 -0.35 0.49 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.43 5.26 -51.93 -0.27 0.15 16 42 H 0.08 0.76 7.99 -51.93 -0.41 0.35 16 43 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 44 H 0.12 1.01 7.81 -52.49 -0.41 0.60 16 45 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.12 1.07 7.00 -52.49 -0.37 0.70 16 49 H 0.04 0.57 6.79 -51.93 -0.35 0.22 16 50 H 0.06 0.74 5.74 -51.92 -0.30 0.44 16 51 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 52 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -28.00 385.15 -12.38 -40.39 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -9.07 Total: 7.01 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -3.20 Total: -22.81 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.90 Total: -46.66 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.00 -12.38 -40.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255388792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.669 kcal (2) G-P(sol) polarization free energy of solvation -28.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds