Wall clock time and date at job start Tue Mar 31 2020 11:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46885 * 2 1 4 4 H 1.08996 * 109.47014 * 177.53966 * 3 2 1 5 5 C 1.50702 * 109.47344 * 57.53746 * 3 2 1 6 6 H 1.07995 * 120.00219 * 239.99178 * 5 3 2 7 7 C 1.37877 * 119.99567 * 59.99951 * 5 3 2 8 8 N 1.31515 * 120.00090 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99811 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47505 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47474 * 120.00093 * 9 7 5 12 12 H 1.48504 * 109.47341 * 240.00110 * 9 7 5 13 13 N 1.46906 * 109.47347 * 297.53812 * 3 2 1 14 14 C 1.46902 * 111.00000 * 274.30334 * 13 3 2 15 15 H 1.09000 * 108.96427 * 35.32051 * 14 13 3 16 16 C 1.54513 * 109.03941 * 276.40985 * 14 13 3 17 17 C 1.50537 * 108.85444 * 162.17385 * 16 14 13 18 18 C 1.53914 * 112.93370 * 91.76069 * 17 16 14 19 19 N 1.47947 * 113.33021 * 317.75660 * 18 17 16 20 20 C 1.46900 * 111.00004 * 192.18257 * 19 18 17 21 21 C 1.50693 * 109.47340 * 66.04424 * 20 19 18 22 22 C 1.38238 * 119.99771 * 269.72782 * 21 20 19 23 23 C 1.38239 * 120.00012 * 179.76961 * 22 21 20 24 24 C 1.38241 * 119.99566 * 0.48153 * 23 22 21 25 25 C 1.38230 * 120.00243 * 359.79368 * 24 23 22 26 26 C 1.38232 * 120.00102 * 90.00091 * 21 20 19 27 27 C 1.44305 * 113.65221 * 318.13744 * 19 18 17 28 28 C 1.45878 * 109.03652 * 154.23128 * 14 13 3 29 29 H 1.08999 * 109.46845 * 54.54942 * 1 2 3 30 30 H 1.08996 * 109.46918 * 174.54696 * 1 2 3 31 31 H 1.09006 * 109.46611 * 294.54849 * 1 2 3 32 32 H 1.09004 * 109.46718 * 240.00176 * 2 1 3 33 33 H 1.08993 * 109.46910 * 120.00030 * 2 1 3 34 34 H 0.97001 * 119.99773 * 179.97438 * 8 7 5 35 35 H 1.00894 * 111.00176 * 150.34920 * 13 3 2 36 36 H 1.09004 * 109.56779 * 281.98430 * 16 14 13 37 37 H 1.08994 * 109.57561 * 42.35609 * 16 14 13 38 38 H 1.09001 * 108.78420 * 212.64802 * 17 16 14 39 39 H 1.09000 * 108.79137 * 330.86521 * 17 16 14 40 40 H 1.08996 * 108.71472 * 78.75151 * 18 17 16 41 41 H 1.08999 * 108.70974 * 196.76302 * 18 17 16 42 42 H 1.09002 * 109.46915 * 186.04551 * 20 19 18 43 43 H 1.09000 * 109.46959 * 306.04111 * 20 19 18 44 44 H 1.08000 * 120.00234 * 359.97438 * 22 21 20 45 45 H 1.07998 * 120.00467 * 180.25256 * 23 22 21 46 46 H 1.08001 * 120.00029 * 179.77125 * 24 23 22 47 47 H 1.07998 * 120.00315 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.00480 * 0.02562 * 26 21 20 49 49 H 1.09003 * 109.69511 * 335.67985 * 27 19 18 50 50 H 1.09011 * 109.69407 * 215.09804 * 27 19 18 51 51 H 1.09003 * 108.84695 * 302.88139 * 28 14 13 52 52 H 1.08999 * 108.84594 * 61.24201 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1291 1.4428 0.0441 5 6 1.4885 2.1703 1.1988 6 1 0.8725 3.0468 1.0621 7 6 1.7705 1.7173 2.4701 8 7 2.5204 0.6498 2.6366 9 14 1.0874 2.6199 3.9561 10 1 0.2807 3.7811 3.5023 11 1 0.2299 1.6984 4.7439 12 1 2.2092 3.0981 4.8036 13 7 1.5995 2.1177 -1.2281 14 6 2.5377 1.8693 -2.3309 15 1 2.9298 0.8562 -2.2411 16 6 3.7081 2.8732 -2.2328 17 6 4.8584 2.3615 -3.0581 18 6 4.8392 2.8870 -4.5046 19 7 3.4897 2.8846 -5.1110 20 6 3.5632 3.1146 -6.5601 21 6 4.2546 1.9491 -7.2192 22 6 5.6268 1.9639 -7.3863 23 6 6.2616 0.8927 -7.9867 24 6 5.5230 -0.1889 -8.4290 25 6 4.1503 -0.2012 -8.2671 26 6 3.5161 0.8677 -7.6620 27 6 2.7237 1.6983 -4.8140 28 6 1.8259 1.9934 -3.5982 29 1 -0.3633 0.5960 -0.8372 30 1 -0.3633 -1.0230 -0.0977 31 1 -0.3633 0.4270 0.9349 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 2.7191 0.3314 3.5310 35 1 1.4777 3.1071 -1.0730 36 1 3.3893 3.8439 -2.6127 37 1 4.0196 2.9705 -1.1928 38 1 5.7923 2.6668 -2.5860 39 1 4.8181 1.2725 -3.0796 40 1 5.2237 3.9069 -4.5113 41 1 5.4964 2.2644 -5.1116 42 1 2.5556 3.2149 -6.9636 43 1 4.1252 4.0280 -6.7549 44 1 6.2032 2.8109 -7.0447 45 1 7.3340 0.9024 -8.1135 46 1 6.0185 -1.0242 -8.9014 47 1 3.5732 -1.0460 -8.6131 48 1 2.4435 0.8583 -7.5359 49 1 3.3981 0.8742 -4.5812 50 1 2.1050 1.4360 -5.6723 51 1 0.9883 1.2958 -3.6014 52 1 1.4369 3.0078 -3.6857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255388792.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:32 Heat of formation + Delta-G solvation = 8.969912 kcal Electronic energy + Delta-G solvation = -27441.057710 eV Core-core repulsion = 24018.078711 eV Total energy + Delta-G solvation = -3422.978999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06107 -39.69238 -37.87452 -35.77392 -33.83663 -33.12209 -32.25795 -31.76080 -30.84399 -28.26983 -27.41635 -25.91112 -25.11741 -24.58482 -23.31703 -22.24492 -21.52665 -20.71910 -20.49061 -18.34956 -17.58188 -17.12715 -17.01853 -16.60504 -16.18597 -15.94428 -15.73351 -15.35742 -15.23120 -15.06420 -14.50141 -14.37267 -14.19217 -13.96207 -13.84683 -13.75808 -13.47103 -13.32741 -12.93044 -12.82123 -12.73871 -12.48055 -12.44619 -12.28812 -12.16558 -11.91030 -11.84292 -11.75726 -11.72458 -11.54099 -11.37015 -11.29325 -11.15880 -10.73571 -10.51441 -9.79787 -9.68793 -9.07631 -8.84664 -8.07436 -6.18678 0.43298 0.50360 1.40316 1.43123 1.53762 2.43779 2.81036 3.12750 3.21542 3.67429 3.77182 3.89395 3.94026 4.02904 4.15634 4.20096 4.26024 4.27933 4.38099 4.45358 4.61724 4.63046 4.65955 4.69434 4.76214 4.77422 4.82115 4.86403 4.87193 4.93953 4.98362 5.10130 5.13858 5.15447 5.16637 5.28589 5.31706 5.39281 5.43668 5.46539 5.55404 5.57242 5.63172 5.67868 5.68922 5.75069 5.86886 5.95445 6.12937 6.21468 6.30518 6.34033 6.59155 6.89049 7.11664 7.50174 8.97998 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.024506 B = 0.002801 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.288864 B = 9993.262499 C =10252.325450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.097 4.097 3 C 0.227 3.773 4 H -0.037 1.037 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.952 3.048 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.679 5.679 14 C 0.100 3.900 15 H 0.035 0.965 16 C -0.127 4.127 17 C -0.111 4.111 18 C 0.065 3.935 19 N -0.537 5.537 20 C 0.098 3.902 21 C -0.128 4.128 22 C -0.120 4.120 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.132 4.132 26 C -0.122 4.122 27 C 0.076 3.924 28 C -0.090 4.090 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.014 0.986 33 H 0.054 0.946 34 H 0.259 0.741 35 H 0.330 0.670 36 H 0.075 0.925 37 H 0.030 0.970 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.129 0.871 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.129 0.871 49 H 0.026 0.974 50 H 0.082 0.918 51 H 0.057 0.943 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.468 2.180 -23.226 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.118 3.882 4 H -0.020 1.020 5 C -0.557 4.557 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.308 5.308 14 C -0.010 4.010 15 H 0.053 0.947 16 C -0.166 4.166 17 C -0.149 4.149 18 C -0.061 4.061 19 N -0.259 5.259 20 C -0.029 4.029 21 C -0.130 4.130 22 C -0.139 4.139 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.150 4.150 26 C -0.140 4.140 27 C -0.053 4.053 28 C -0.128 4.128 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.147 0.853 45 H 0.154 0.846 46 H 0.154 0.846 47 H 0.152 0.848 48 H 0.147 0.853 49 H 0.044 0.956 50 H 0.101 0.899 51 H 0.075 0.925 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.842 1.946 -23.024 23.608 hybrid contribution 1.169 -0.127 1.300 1.753 sum 6.011 1.819 -21.723 22.613 Atomic orbital electron populations 1.21288 0.95955 0.98327 1.00686 1.21303 0.96356 0.98030 0.97872 1.18820 0.90899 0.91899 0.86547 1.01982 1.21501 1.31033 1.11779 0.91419 0.92601 1.25614 0.95482 0.95733 1.01461 1.70041 1.38841 1.24518 1.22391 0.85599 0.78103 0.78826 0.79667 1.19058 1.20843 1.21003 1.60830 1.47855 1.15545 1.06541 1.20500 0.91261 0.96638 0.92616 0.94655 1.21855 0.96505 1.00342 0.97948 1.21251 0.98611 0.99688 0.95377 1.22412 0.89208 1.01301 0.93227 1.61124 1.16330 1.38422 1.10041 1.21332 1.01181 0.95071 0.85345 1.20840 0.94745 0.98041 0.99325 1.21292 0.94225 0.99281 0.99089 1.21440 1.00823 0.94076 0.98639 1.21451 0.94413 0.98966 1.00132 1.21442 0.95285 0.98885 0.99353 1.21331 1.00382 0.93894 0.98408 1.21670 0.95594 0.90459 0.97542 1.20331 0.97749 1.02344 0.92411 0.92635 0.94892 0.95013 0.96701 0.92797 0.93186 0.85285 0.90650 0.95087 0.91383 0.94015 0.90216 0.93739 0.88988 0.89020 0.85262 0.84650 0.84607 0.84754 0.85349 0.95576 0.89937 0.92457 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.78 9.45 71.99 0.68 -4.10 16 2 C -0.10 -4.86 5.55 30.60 0.17 -4.69 16 3 C 0.23 11.55 2.00 44.17 0.09 11.64 16 4 H -0.04 -2.15 7.07 -2.39 -0.02 -2.17 16 5 C -0.52 -28.28 7.31 25.60 0.19 -28.09 16 6 H 0.06 3.02 7.61 -2.91 -0.02 2.99 16 7 C 0.02 0.88 5.30 84.65 0.45 1.33 16 8 N -0.92 -53.43 11.34 21.45 0.24 -53.18 16 9 Si 0.95 43.98 29.54 68.60 2.03 46.00 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 13 N -0.68 -28.63 5.22 -481.95 -2.52 -31.15 16 14 C 0.10 3.58 1.84 43.25 0.08 3.66 16 15 H 0.04 1.43 6.55 -2.39 -0.02 1.42 16 16 C -0.13 -4.23 4.87 30.31 0.15 -4.08 16 17 C -0.11 -3.09 5.27 30.11 0.16 -2.93 16 18 C 0.07 1.45 5.27 86.41 0.46 1.91 16 19 N -0.54 -11.64 4.18 -900.79 -3.76 -15.41 16 20 C 0.10 1.67 5.33 85.55 0.46 2.12 16 21 C -0.13 -2.28 4.37 -19.87 -0.09 -2.36 16 22 C -0.12 -2.05 7.85 22.27 0.17 -1.88 16 23 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 24 C -0.13 -2.11 10.05 22.27 0.22 -1.88 16 25 C -0.13 -2.20 10.05 22.27 0.22 -1.98 16 26 C -0.12 -2.15 8.57 22.27 0.19 -1.96 16 27 C 0.08 1.85 4.35 87.12 0.38 2.23 16 28 C -0.09 -2.65 4.89 28.74 0.14 -2.50 16 29 H 0.05 2.40 7.52 -2.39 -0.02 2.38 16 30 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.03 1.54 7.36 -2.38 -0.02 1.52 16 32 H 0.01 0.69 7.43 -2.38 -0.02 0.67 16 33 H 0.05 3.03 6.14 -2.39 -0.01 3.01 16 34 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 35 H 0.33 13.89 7.97 -89.70 -0.71 13.18 16 36 H 0.07 2.37 7.78 -2.38 -0.02 2.35 16 37 H 0.03 1.22 7.27 -2.39 -0.02 1.20 16 38 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.27 6.66 -2.39 -0.02 1.26 16 40 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.04 0.94 5.26 -2.39 -0.01 0.93 16 42 H 0.09 1.43 7.99 -2.39 -0.02 1.41 16 43 H 0.09 1.36 8.07 -2.39 -0.02 1.34 16 44 H 0.13 1.88 7.81 -2.91 -0.02 1.85 16 45 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 46 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 47 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 48 H 0.13 2.00 7.00 -2.91 -0.02 1.98 16 49 H 0.03 0.72 6.79 -2.39 -0.02 0.70 16 50 H 0.08 1.71 5.74 -2.38 -0.01 1.70 16 51 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 Total: -1.00 -60.71 385.15 0.50 -60.21 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.17 Total: 29.03 kcal Atomic # 6 Polarization: -39.84 SS G_CDS: 4.34 Total: -35.50 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -6.04 Total: -99.74 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -60.71 0.50 -60.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255388792.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.180 kcal (2) G-P(sol) polarization free energy of solvation -60.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds