Wall clock time and date at job start Tue Mar 31 2020 11:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46938 * 2 1 4 4 H 1.09003 * 109.47009 * 55.84775 * 3 2 1 5 5 C 1.50694 * 109.46911 * 175.84965 * 3 2 1 6 6 H 1.07998 * 120.00024 * 120.00225 * 5 3 2 7 7 C 1.37880 * 120.00252 * 299.72261 * 5 3 2 8 8 N 1.31523 * 119.99579 * 0.27770 * 7 5 3 9 9 Si 1.86790 * 120.00175 * 180.27803 * 7 5 3 10 10 H 1.48504 * 109.47383 * 90.00417 * 9 7 5 11 11 H 1.48506 * 109.47002 * 210.00048 * 9 7 5 12 12 H 1.48501 * 109.47521 * 329.99982 * 9 7 5 13 13 N 1.46899 * 109.46972 * 295.84962 * 3 2 1 14 14 C 1.46908 * 110.99865 * 154.65091 * 13 3 2 15 15 H 1.09003 * 109.02477 * 34.08409 * 14 13 3 16 16 C 1.54515 * 109.04387 * 275.19981 * 14 13 3 17 17 C 1.50534 * 108.86822 * 162.20711 * 16 14 13 18 18 C 1.53923 * 112.94048 * 91.75501 * 17 16 14 19 19 N 1.47941 * 113.32702 * 317.75105 * 18 17 16 20 20 C 1.46900 * 111.00072 * 192.18908 * 19 18 17 21 21 C 1.50697 * 109.47143 * 297.41176 * 20 19 18 22 22 C 1.38237 * 119.99980 * 269.72384 * 21 20 19 23 23 C 1.38234 * 120.00098 * 179.76238 * 22 21 20 24 24 C 1.38240 * 120.00118 * 0.49205 * 23 22 21 25 25 C 1.38239 * 119.99404 * 359.78313 * 24 23 22 26 26 C 1.38231 * 120.00314 * 359.96398 * 25 24 23 27 27 C 1.44305 * 113.64560 * 318.14408 * 19 18 17 28 28 C 1.45877 * 109.04161 * 153.03744 * 14 13 3 29 29 H 1.09001 * 109.46905 * 185.14719 * 1 2 3 30 30 H 1.09000 * 109.46907 * 305.14335 * 1 2 3 31 31 H 1.08990 * 109.47092 * 65.14263 * 1 2 3 32 32 H 1.08996 * 109.46757 * 239.99915 * 2 1 3 33 33 H 1.09001 * 109.47045 * 120.00078 * 2 1 3 34 34 H 0.96994 * 119.99700 * 180.02562 * 8 7 5 35 35 H 1.00897 * 110.99942 * 278.60000 * 13 3 2 36 36 H 1.08996 * 109.57620 * 282.02963 * 16 14 13 37 37 H 1.09008 * 109.57128 * 42.39628 * 16 14 13 38 38 H 1.08998 * 108.79386 * 330.85897 * 17 16 14 39 39 H 1.09002 * 108.79225 * 212.64590 * 17 16 14 40 40 H 1.08995 * 108.71346 * 196.75909 * 18 17 16 41 41 H 1.08998 * 108.71443 * 78.74365 * 18 17 16 42 42 H 1.09002 * 109.46884 * 57.40774 * 20 19 18 43 43 H 1.09004 * 109.47478 * 177.40906 * 20 19 18 44 44 H 1.08002 * 119.99582 * 359.97438 * 22 21 20 45 45 H 1.07999 * 120.00039 * 180.24804 * 23 22 21 46 46 H 1.07992 * 120.00163 * 179.76589 * 24 23 22 47 47 H 1.08004 * 119.99510 * 179.97438 * 25 24 23 48 48 H 1.08005 * 119.99913 * 180.02562 * 26 25 24 49 49 H 1.09000 * 109.69158 * 335.69146 * 27 19 18 50 50 H 1.09001 * 109.69421 * 215.10608 * 27 19 18 51 51 H 1.09001 * 108.84387 * 302.88191 * 28 14 13 52 52 H 1.09004 * 108.84307 * 61.23545 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6172 1.9774 0.8505 5 6 3.5435 1.4437 0.1028 6 1 4.1379 1.8922 -0.6794 7 6 4.1601 0.8775 1.1984 8 7 3.4362 0.3314 2.1511 9 14 6.0233 0.8859 1.3295 10 1 6.4647 2.1188 2.0300 11 1 6.4711 -0.3054 2.0949 12 1 6.6157 0.8510 -0.0318 13 7 1.6339 2.1054 -1.2464 14 6 1.5494 3.5608 -1.0653 15 1 2.3173 3.8761 -0.3588 16 6 0.1604 3.9176 -0.4902 17 6 0.2178 5.3022 0.0977 18 6 -0.1787 6.3979 -0.9081 19 7 0.3909 6.1885 -2.2573 20 6 0.2289 7.3884 -3.0891 21 6 -1.2387 7.6725 -3.2805 22 6 -1.9142 7.1250 -4.3552 23 6 -3.2615 7.3816 -4.5280 24 6 -3.9310 8.1940 -3.6320 25 6 -3.2540 8.7461 -2.5606 26 6 -1.9080 8.4852 -2.3848 27 6 1.7658 5.7506 -2.2435 28 6 1.7854 4.2145 -2.3478 29 1 -0.3633 -1.0235 0.0922 30 1 -0.3633 0.5916 0.8403 31 1 -0.3633 0.4320 -0.9324 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8699 -0.0666 2.9219 35 1 2.2606 1.8708 -2.0015 36 1 -0.5829 3.8897 -1.2869 37 1 -0.1079 3.2018 0.2870 38 1 1.2331 5.4946 0.4444 39 1 -0.4573 5.3491 0.9522 40 1 0.1641 7.3607 -0.5294 41 1 -1.2655 6.4231 -0.9874 42 1 0.7023 8.2382 -2.5972 43 1 0.6967 7.2236 -4.0598 44 1 -1.3902 6.4940 -5.0577 45 1 -3.7902 6.9506 -5.3653 46 1 -4.9826 8.3975 -3.7692 47 1 -3.7770 9.3811 -1.8607 48 1 -1.3792 8.9163 -1.5474 49 1 2.2411 6.0618 -1.3133 50 1 2.2976 6.1832 -3.0910 51 1 2.7566 3.9000 -2.7299 52 1 1.0141 3.8995 -3.0507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255388794.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:38 Heat of formation + Delta-G solvation = 19.546373 kcal Electronic energy + Delta-G solvation = -27255.666134 eV Core-core repulsion = 23833.145765 eV Total energy + Delta-G solvation = -3422.520369 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.82469 -38.66242 -36.35707 -34.12539 -32.36491 -31.81099 -31.26487 -31.00319 -29.37892 -26.86885 -26.03061 -24.54635 -23.67784 -22.67046 -22.32973 -21.28926 -19.82001 -19.45084 -19.12460 -16.91075 -16.54069 -15.99755 -15.79661 -15.45854 -14.99218 -14.71946 -14.38056 -13.95098 -13.75323 -13.53787 -13.46617 -13.02520 -12.92577 -12.72091 -12.65681 -12.41920 -12.14342 -12.11257 -11.56900 -11.26263 -11.20861 -11.12754 -11.06862 -10.95533 -10.79237 -10.68509 -10.57592 -10.28848 -10.27625 -10.03781 -9.76471 -9.48263 -9.35649 -9.02217 -8.94931 -8.88701 -8.33194 -8.07334 -7.13045 -5.95684 -4.08490 1.21436 1.29551 3.27151 3.34717 3.37298 3.57659 4.12395 4.41458 4.63931 4.71345 4.87574 4.96011 5.04883 5.08020 5.18998 5.24619 5.29990 5.36590 5.38260 5.48840 5.51201 5.54728 5.69500 5.80403 5.88175 5.91223 5.97947 6.03847 6.13842 6.23896 6.33088 6.38772 6.40559 6.46352 6.50902 6.52438 6.57353 6.70939 6.73458 6.80007 6.87842 6.95648 7.06614 7.16307 7.22066 7.25177 7.38442 7.54080 7.67148 7.82946 8.16260 8.25102 8.42814 8.77714 9.06655 9.58889 11.03950 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.002897 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.296321 B = 9663.060993 C =10164.067482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.542 4.542 6 H 0.051 0.949 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.687 5.687 14 C 0.097 3.903 15 H 0.037 0.963 16 C -0.093 4.093 17 C -0.120 4.120 18 C 0.068 3.932 19 N -0.537 5.537 20 C 0.097 3.903 21 C -0.073 4.073 22 C -0.098 4.098 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.123 4.123 26 C -0.114 4.114 27 C 0.067 3.933 28 C -0.110 4.110 29 H 0.022 0.978 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.029 0.971 33 H 0.088 0.912 34 H 0.260 0.740 35 H 0.325 0.675 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.070 0.930 42 H 0.038 0.962 43 H 0.082 0.918 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.117 0.883 49 H 0.044 0.956 50 H 0.062 0.938 51 H 0.054 0.946 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.770 15.983 -10.173 21.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.109 3.891 4 H 0.050 0.950 5 C -0.581 4.581 6 H 0.069 0.931 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.316 5.316 14 C -0.014 4.014 15 H 0.055 0.945 16 C -0.131 4.131 17 C -0.159 4.159 18 C -0.059 4.059 19 N -0.262 5.262 20 C -0.030 4.030 21 C -0.073 4.073 22 C -0.116 4.116 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.133 4.133 27 C -0.062 4.062 28 C -0.148 4.148 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.042 0.958 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.100 0.900 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.135 0.865 49 H 0.062 0.938 50 H 0.081 0.919 51 H 0.073 0.927 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.653 15.401 -10.064 21.778 hybrid contribution 2.498 0.827 0.706 2.724 sum -9.155 16.228 -9.358 20.850 Atomic orbital electron populations 1.21680 0.99023 0.98087 1.00390 1.21490 0.92059 0.99445 1.01451 1.19144 0.92300 0.90985 0.86694 0.95000 1.21892 0.92924 1.37773 1.05543 0.93054 1.24930 0.97762 0.95123 0.95743 1.69885 1.34771 1.38267 1.09441 0.86698 0.86369 0.77475 0.78036 1.20870 1.21189 1.20045 1.60954 1.55517 1.05770 1.09351 1.20254 0.95742 0.89824 0.95530 0.94451 1.21202 0.97837 0.93831 1.00243 1.21406 1.01493 0.95714 0.97245 1.22415 0.99738 0.96486 0.87234 1.60717 1.20049 1.31993 1.13432 1.21115 0.92112 0.91600 0.98207 1.19793 0.95773 0.96726 0.95046 1.21037 0.94329 0.98609 0.97649 1.21153 0.94701 0.98673 0.99469 1.21124 0.99718 0.98118 0.95293 1.21092 0.94561 1.00348 0.98091 1.21064 0.94694 0.98714 0.98797 1.21766 0.87518 0.96502 1.00383 1.20640 1.01387 0.93595 0.99181 0.95866 0.94569 0.93381 0.95249 0.89419 0.92977 0.85859 0.91578 0.91980 0.92453 0.91975 0.95785 0.91205 0.94420 0.89984 0.85951 0.86219 0.86405 0.86350 0.86534 0.93812 0.91904 0.92732 0.90845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.73 37.16 0.36 -2.46 16 2 C -0.11 -2.56 5.45 -26.73 -0.15 -2.71 16 3 C 0.22 5.33 1.69 -68.87 -0.12 5.22 16 4 H 0.03 0.88 7.16 -51.93 -0.37 0.51 16 5 C -0.54 -14.58 8.27 -34.44 -0.28 -14.86 16 6 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 7 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 8 N -0.89 -25.12 11.31 55.43 0.63 -24.49 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.69 -14.31 5.54 -103.68 -0.57 -14.88 16 14 C 0.10 1.78 1.88 -70.28 -0.13 1.65 16 15 H 0.04 0.80 7.05 -51.93 -0.37 0.43 16 16 C -0.09 -1.59 5.13 -27.17 -0.14 -1.73 16 17 C -0.12 -1.76 5.27 -27.48 -0.14 -1.91 16 18 C 0.07 0.86 4.49 -2.77 -0.01 0.85 16 19 N -0.54 -6.69 4.01 -236.08 -0.95 -7.64 16 20 C 0.10 1.01 4.96 -4.98 -0.02 0.99 16 21 C -0.07 -0.77 4.78 -104.62 -0.50 -1.27 16 22 C -0.10 -1.00 9.70 -39.58 -0.38 -1.39 16 23 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 24 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 26 C -0.11 -1.13 8.20 -39.58 -0.32 -1.46 16 27 C 0.07 0.88 5.41 -4.71 -0.03 0.85 16 28 C -0.11 -1.69 4.60 -29.60 -0.14 -1.83 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.97 7.87 -51.93 -0.41 0.56 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.09 2.37 5.98 -51.93 -0.31 2.06 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 35 H 0.32 6.76 7.84 -39.29 -0.31 6.45 16 36 H 0.07 1.14 7.79 -51.93 -0.40 0.74 16 37 H 0.06 1.20 7.37 -51.92 -0.38 0.82 16 38 H 0.06 0.89 6.66 -51.93 -0.35 0.55 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.02 0.28 7.95 -51.93 -0.41 -0.13 16 41 H 0.07 0.90 6.86 -51.93 -0.36 0.54 16 42 H 0.04 0.38 7.99 -51.93 -0.41 -0.04 16 43 H 0.08 0.79 7.73 -51.93 -0.40 0.39 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 47 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 48 H 0.12 1.05 8.02 -52.48 -0.42 0.63 16 49 H 0.04 0.61 6.79 -51.93 -0.35 0.26 16 50 H 0.06 0.72 7.40 -51.93 -0.38 0.33 16 51 H 0.05 0.85 7.95 -51.93 -0.41 0.43 16 52 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -27.95 394.06 -12.67 -40.62 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -9.40 Total: 7.19 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -3.30 Total: -22.91 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.90 Total: -47.01 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -27.95 -12.67 -40.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255388794.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.164 kcal (2) G-P(sol) polarization free energy of solvation -27.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds