Wall clock time and date at job start Tue Mar 31 2020 11:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46938 * 2 1 4 4 H 1.09003 * 109.47009 * 55.84775 * 3 2 1 5 5 C 1.50694 * 109.46911 * 175.84965 * 3 2 1 6 6 H 1.07998 * 120.00024 * 120.00225 * 5 3 2 7 7 C 1.37880 * 120.00252 * 299.72261 * 5 3 2 8 8 N 1.31523 * 119.99579 * 0.27770 * 7 5 3 9 9 Si 1.86790 * 120.00175 * 180.27803 * 7 5 3 10 10 H 1.48504 * 109.47383 * 90.00417 * 9 7 5 11 11 H 1.48506 * 109.47002 * 210.00048 * 9 7 5 12 12 H 1.48501 * 109.47521 * 329.99982 * 9 7 5 13 13 N 1.46899 * 109.46972 * 295.84962 * 3 2 1 14 14 C 1.46908 * 110.99865 * 154.65091 * 13 3 2 15 15 H 1.09003 * 109.02477 * 34.08409 * 14 13 3 16 16 C 1.54515 * 109.04387 * 275.19981 * 14 13 3 17 17 C 1.50534 * 108.86822 * 162.20711 * 16 14 13 18 18 C 1.53923 * 112.94048 * 91.75501 * 17 16 14 19 19 N 1.47941 * 113.32702 * 317.75105 * 18 17 16 20 20 C 1.46900 * 111.00072 * 192.18908 * 19 18 17 21 21 C 1.50697 * 109.47143 * 297.41176 * 20 19 18 22 22 C 1.38237 * 119.99980 * 269.72384 * 21 20 19 23 23 C 1.38234 * 120.00098 * 179.76238 * 22 21 20 24 24 C 1.38240 * 120.00118 * 0.49205 * 23 22 21 25 25 C 1.38239 * 119.99404 * 359.78313 * 24 23 22 26 26 C 1.38231 * 120.00314 * 359.96398 * 25 24 23 27 27 C 1.44305 * 113.64560 * 318.14408 * 19 18 17 28 28 C 1.45877 * 109.04161 * 153.03744 * 14 13 3 29 29 H 1.09001 * 109.46905 * 185.14719 * 1 2 3 30 30 H 1.09000 * 109.46907 * 305.14335 * 1 2 3 31 31 H 1.08990 * 109.47092 * 65.14263 * 1 2 3 32 32 H 1.08996 * 109.46757 * 239.99915 * 2 1 3 33 33 H 1.09001 * 109.47045 * 120.00078 * 2 1 3 34 34 H 0.96994 * 119.99700 * 180.02562 * 8 7 5 35 35 H 1.00897 * 110.99942 * 278.60000 * 13 3 2 36 36 H 1.08996 * 109.57620 * 282.02963 * 16 14 13 37 37 H 1.09008 * 109.57128 * 42.39628 * 16 14 13 38 38 H 1.08998 * 108.79386 * 330.85897 * 17 16 14 39 39 H 1.09002 * 108.79225 * 212.64590 * 17 16 14 40 40 H 1.08995 * 108.71346 * 196.75909 * 18 17 16 41 41 H 1.08998 * 108.71443 * 78.74365 * 18 17 16 42 42 H 1.09002 * 109.46884 * 57.40774 * 20 19 18 43 43 H 1.09004 * 109.47478 * 177.40906 * 20 19 18 44 44 H 1.08002 * 119.99582 * 359.97438 * 22 21 20 45 45 H 1.07999 * 120.00039 * 180.24804 * 23 22 21 46 46 H 1.07992 * 120.00163 * 179.76589 * 24 23 22 47 47 H 1.08004 * 119.99510 * 179.97438 * 25 24 23 48 48 H 1.08005 * 119.99913 * 180.02562 * 26 25 24 49 49 H 1.09000 * 109.69158 * 335.69146 * 27 19 18 50 50 H 1.09001 * 109.69421 * 215.10608 * 27 19 18 51 51 H 1.09001 * 108.84387 * 302.88191 * 28 14 13 52 52 H 1.09004 * 108.84307 * 61.23545 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6172 1.9774 0.8505 5 6 3.5435 1.4437 0.1028 6 1 4.1379 1.8922 -0.6794 7 6 4.1601 0.8775 1.1984 8 7 3.4362 0.3314 2.1511 9 14 6.0233 0.8859 1.3295 10 1 6.4647 2.1188 2.0300 11 1 6.4711 -0.3054 2.0949 12 1 6.6157 0.8510 -0.0318 13 7 1.6339 2.1054 -1.2464 14 6 1.5494 3.5608 -1.0653 15 1 2.3173 3.8761 -0.3588 16 6 0.1604 3.9176 -0.4902 17 6 0.2178 5.3022 0.0977 18 6 -0.1787 6.3979 -0.9081 19 7 0.3909 6.1885 -2.2573 20 6 0.2289 7.3884 -3.0891 21 6 -1.2387 7.6725 -3.2805 22 6 -1.9142 7.1250 -4.3552 23 6 -3.2615 7.3816 -4.5280 24 6 -3.9310 8.1940 -3.6320 25 6 -3.2540 8.7461 -2.5606 26 6 -1.9080 8.4852 -2.3848 27 6 1.7658 5.7506 -2.2435 28 6 1.7854 4.2145 -2.3478 29 1 -0.3633 -1.0235 0.0922 30 1 -0.3633 0.5916 0.8403 31 1 -0.3633 0.4320 -0.9324 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 3.8699 -0.0666 2.9219 35 1 2.2606 1.8708 -2.0015 36 1 -0.5829 3.8897 -1.2869 37 1 -0.1079 3.2018 0.2870 38 1 1.2331 5.4946 0.4444 39 1 -0.4573 5.3491 0.9522 40 1 0.1641 7.3607 -0.5294 41 1 -1.2655 6.4231 -0.9874 42 1 0.7023 8.2382 -2.5972 43 1 0.6967 7.2236 -4.0598 44 1 -1.3902 6.4940 -5.0577 45 1 -3.7902 6.9506 -5.3653 46 1 -4.9826 8.3975 -3.7692 47 1 -3.7770 9.3811 -1.8607 48 1 -1.3792 8.9163 -1.5474 49 1 2.2411 6.0618 -1.3133 50 1 2.2976 6.1832 -3.0910 51 1 2.7566 3.9000 -2.7299 52 1 1.0141 3.8995 -3.0507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255388794.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:37 Heat of formation + Delta-G solvation = 5.564922 kcal Electronic energy + Delta-G solvation = -27256.272415 eV Core-core repulsion = 23833.145765 eV Total energy + Delta-G solvation = -3423.126650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.76794 -39.71634 -37.85621 -35.65764 -33.85809 -33.34296 -32.49163 -31.70216 -30.85195 -28.28627 -27.52087 -25.79505 -25.00490 -24.10322 -23.34075 -22.07782 -21.38886 -21.00830 -20.48589 -18.59252 -17.65291 -17.09914 -16.95336 -16.68479 -16.24904 -15.94216 -15.50888 -15.42130 -15.16123 -14.81140 -14.56119 -14.36015 -14.20476 -14.04992 -13.76000 -13.51329 -13.32686 -13.21066 -13.15253 -13.07380 -12.88773 -12.62773 -12.52264 -12.20992 -12.00014 -11.97516 -11.81385 -11.72743 -11.71365 -11.49635 -11.46614 -11.21650 -11.14213 -10.85891 -10.44049 -9.72471 -9.62036 -9.06692 -8.94466 -8.03659 -6.26191 0.50193 0.59471 1.36267 1.38170 1.47298 2.39734 2.78866 3.15088 3.22634 3.63292 3.82724 3.96050 4.01085 4.02671 4.22900 4.24776 4.29113 4.36552 4.37782 4.48423 4.59533 4.61135 4.67077 4.70257 4.76063 4.78440 4.80387 4.85230 4.90141 4.92600 4.99024 5.08630 5.14734 5.19610 5.23679 5.25009 5.32799 5.40055 5.43257 5.50758 5.54608 5.59680 5.64541 5.69727 5.70544 5.79323 5.81267 6.14517 6.18276 6.21902 6.25674 6.35761 6.46975 6.90223 7.08658 7.45411 8.92218 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.021122 B = 0.002897 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.296321 B = 9663.060993 C =10164.067482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.102 4.102 3 C 0.228 3.772 4 H -0.003 1.003 5 C -0.556 4.556 6 H 0.048 0.952 7 C 0.019 3.981 8 N -0.912 5.912 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.269 1.269 13 N -0.680 5.680 14 C 0.103 3.897 15 H 0.004 0.996 16 C -0.082 4.082 17 C -0.117 4.117 18 C 0.078 3.922 19 N -0.545 5.545 20 C 0.100 3.900 21 C -0.086 4.086 22 C -0.112 4.112 23 C -0.131 4.131 24 C -0.130 4.130 25 C -0.130 4.130 26 C -0.124 4.124 27 C 0.075 3.925 28 C -0.103 4.103 29 H 0.042 0.958 30 H 0.028 0.972 31 H 0.056 0.944 32 H 0.027 0.973 33 H 0.058 0.942 34 H 0.261 0.739 35 H 0.326 0.674 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.092 0.908 44 H 0.126 0.874 45 H 0.136 0.864 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.123 0.877 49 H 0.034 0.966 50 H 0.086 0.914 51 H 0.053 0.947 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.235 17.370 -11.485 23.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.119 3.881 4 H 0.015 0.985 5 C -0.595 4.595 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.551 5.551 9 Si 0.774 3.226 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.194 1.194 13 N -0.309 5.309 14 C -0.007 4.007 15 H 0.022 0.978 16 C -0.120 4.120 17 C -0.155 4.155 18 C -0.049 4.049 19 N -0.270 5.270 20 C -0.027 4.027 21 C -0.087 4.087 22 C -0.130 4.130 23 C -0.149 4.149 24 C -0.148 4.148 25 C -0.148 4.148 26 C -0.142 4.142 27 C -0.054 4.054 28 C -0.142 4.142 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.143 0.857 36 H 0.086 0.914 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.056 0.944 41 H 0.089 0.911 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.144 0.856 45 H 0.153 0.847 46 H 0.156 0.844 47 H 0.154 0.846 48 H 0.141 0.859 49 H 0.052 0.948 50 H 0.105 0.895 51 H 0.071 0.929 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.127 16.802 -11.392 23.646 hybrid contribution 2.581 0.407 1.108 2.838 sum -9.546 17.209 -10.285 22.205 Atomic orbital electron populations 1.21523 0.96491 0.99316 1.00490 1.21361 0.94303 0.98665 0.99796 1.18862 0.91104 0.91150 0.86986 0.98519 1.22191 0.94201 1.37585 1.05561 0.93385 1.25666 1.02043 0.94887 0.95507 1.70019 1.36390 1.38846 1.09842 0.85714 0.81234 0.77469 0.78152 1.20521 1.20820 1.19402 1.60921 1.54926 1.07321 1.07714 1.20292 0.95477 0.88413 0.96526 0.97769 1.21063 0.96851 0.94757 0.99317 1.21347 1.01052 0.94891 0.98215 1.22277 0.99763 0.95921 0.86951 1.60646 1.19427 1.33523 1.13405 1.21136 0.92482 0.90823 0.98212 1.19863 0.95824 0.97416 0.95565 1.21210 0.94938 0.98983 0.97903 1.21424 0.94612 0.98720 1.00120 1.21441 1.00800 0.97613 0.94969 1.21383 0.94504 1.00431 0.98510 1.21233 0.95210 0.98809 0.98991 1.21652 0.88254 0.94571 1.00932 1.20547 1.01205 0.95413 0.96989 0.93862 0.95327 0.92487 0.95457 0.92348 0.92985 0.85720 0.91357 0.94815 0.93737 0.91129 0.94424 0.91055 0.93637 0.89004 0.85613 0.84661 0.84446 0.84611 0.85865 0.94810 0.89529 0.92878 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.73 71.98 0.70 -4.37 16 2 C -0.10 -5.07 5.45 30.60 0.17 -4.90 16 3 C 0.23 11.57 1.69 44.17 0.07 11.65 16 4 H 0.00 -0.18 7.16 -2.39 -0.02 -0.20 16 5 C -0.56 -30.57 8.27 25.60 0.21 -30.36 16 6 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 7 C 0.02 1.04 5.30 84.65 0.45 1.49 16 8 N -0.91 -52.97 11.31 21.45 0.24 -52.73 16 9 Si 0.95 43.88 29.54 68.60 2.03 45.91 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 13 N -0.68 -28.86 5.54 -481.94 -2.67 -31.53 16 14 C 0.10 3.86 1.88 43.24 0.08 3.94 16 15 H 0.00 0.19 7.05 -2.39 -0.02 0.17 16 16 C -0.08 -2.84 5.13 30.31 0.16 -2.69 16 17 C -0.12 -3.41 5.27 30.11 0.16 -3.25 16 18 C 0.08 1.86 4.49 86.41 0.39 2.25 16 19 N -0.55 -12.64 4.01 -900.84 -3.62 -16.26 16 20 C 0.10 1.87 4.96 85.56 0.42 2.30 16 21 C -0.09 -1.66 4.78 -19.87 -0.10 -1.76 16 22 C -0.11 -2.11 9.70 22.27 0.22 -1.90 16 23 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.13 -2.06 10.05 22.27 0.22 -1.83 16 25 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 26 C -0.12 -2.23 8.20 22.27 0.18 -2.05 16 27 C 0.07 1.86 5.41 87.12 0.47 2.33 16 28 C -0.10 -3.11 4.60 28.74 0.13 -2.98 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 2.27 7.87 -2.39 -0.02 2.25 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 3.24 5.98 -2.39 -0.01 3.23 16 34 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.33 13.68 7.84 -89.70 -0.70 12.98 16 36 H 0.07 2.34 7.79 -2.39 -0.02 2.32 16 37 H 0.03 1.35 7.37 -2.38 -0.02 1.33 16 38 H 0.04 1.41 6.66 -2.39 -0.02 1.39 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 0.81 7.95 -2.39 -0.02 0.79 16 41 H 0.07 1.72 6.86 -2.39 -0.02 1.70 16 42 H 0.05 0.79 7.99 -2.39 -0.02 0.77 16 43 H 0.09 1.54 7.73 -2.38 -0.02 1.52 16 44 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 45 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 46 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 47 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 48 H 0.12 1.96 8.02 -2.91 -0.02 1.94 16 49 H 0.03 0.91 6.79 -2.39 -0.02 0.90 16 50 H 0.09 1.76 7.40 -2.39 -0.02 1.74 16 51 H 0.05 1.61 7.95 -2.39 -0.02 1.59 16 52 H 0.07 2.26 8.08 -2.39 -0.02 2.24 16 Total: -1.00 -60.77 394.06 0.54 -60.24 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.17 Total: 30.39 kcal Atomic # 6 Polarization: -40.40 SS G_CDS: 4.39 Total: -36.01 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -6.04 Total: -100.52 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -60.77 0.54 -60.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255388794.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.803 kcal (2) G-P(sol) polarization free energy of solvation -60.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds