Wall clock time and date at job start Tue Mar 31 2020 11:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47170 * 2 1 4 4 C 1.46899 * 111.00120 * 73.05909 * 3 2 1 5 5 C 1.50697 * 109.47045 * 285.52336 * 4 3 2 6 6 H 1.08005 * 119.99914 * 358.18645 * 5 4 3 7 7 C 1.37874 * 120.00054 * 178.19061 * 5 4 3 8 8 N 1.31520 * 119.99928 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00039 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47083 * 90.00134 * 9 7 5 11 11 H 1.48497 * 109.47131 * 209.99825 * 9 7 5 12 12 H 1.48490 * 109.47399 * 329.99940 * 9 7 5 13 13 C 1.46901 * 110.99613 * 197.01329 * 3 2 1 14 14 H 1.09006 * 109.57008 * 185.88471 * 13 3 2 15 15 C 1.53116 * 109.52512 * 306.04251 * 13 3 2 16 16 C 1.53040 * 109.27744 * 177.56004 * 15 13 3 17 17 N 1.46839 * 109.51619 * 300.82759 * 16 15 13 18 18 C 1.46900 * 111.00014 * 185.83262 * 17 16 15 19 19 C 1.50700 * 109.46983 * 66.04668 * 18 17 16 20 20 C 1.38240 * 120.00052 * 269.72659 * 19 18 17 21 21 C 1.38233 * 119.99803 * 179.81159 * 20 19 18 22 22 C 1.38238 * 120.00389 * 0.39747 * 21 20 19 23 23 C 1.38238 * 119.99826 * 359.85635 * 22 21 20 24 24 C 1.38236 * 120.00009 * 90.00477 * 19 18 17 25 25 C 1.46822 * 111.21018 * 61.74764 * 17 16 15 26 26 H 1.09002 * 109.46865 * 178.23027 * 25 17 16 27 27 C 1.53008 * 109.45494 * 58.26101 * 25 17 16 28 28 C 1.53032 * 109.52109 * 298.24744 * 25 17 16 29 29 H 1.08996 * 109.47266 * 48.76877 * 1 2 3 30 30 H 1.09003 * 109.47038 * 168.76498 * 1 2 3 31 31 H 1.08996 * 109.47146 * 288.76853 * 1 2 3 32 32 H 1.09008 * 109.47166 * 239.99414 * 2 1 3 33 33 H 1.08998 * 109.47324 * 120.00042 * 2 1 3 34 34 H 1.09001 * 109.46864 * 45.51881 * 4 3 2 35 35 H 1.08997 * 109.47281 * 165.51979 * 4 3 2 36 36 H 0.97001 * 119.99755 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.50424 * 57.62120 * 15 13 3 38 38 H 1.08997 * 109.53709 * 297.52138 * 15 13 3 39 39 H 1.09005 * 109.46169 * 60.84102 * 16 15 13 40 40 H 1.09000 * 109.46286 * 180.81518 * 16 15 13 41 41 H 1.08999 * 109.47331 * 186.04620 * 18 17 16 42 42 H 1.08997 * 109.47349 * 306.05030 * 18 17 16 43 43 H 1.07993 * 119.99902 * 0.02562 * 20 19 18 44 44 H 1.07999 * 120.00016 * 180.23007 * 21 20 19 45 45 H 1.07995 * 120.00471 * 179.83735 * 22 21 20 46 46 H 1.07993 * 120.00184 * 179.97438 * 23 22 21 47 47 H 1.07999 * 120.00039 * 359.97105 * 24 19 18 48 48 H 1.09004 * 109.46790 * 299.95539 * 27 25 17 49 49 H 1.08994 * 109.47469 * 59.95754 * 27 25 17 50 50 H 1.09000 * 109.46958 * 179.97438 * 27 25 17 51 51 H 1.08995 * 109.50550 * 299.24032 * 28 25 17 52 52 H 1.08996 * 109.50686 * 179.11431 * 28 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8184 2.0146 1.3119 5 6 0.3592 2.3449 1.4920 6 1 -0.3434 2.1374 0.6983 7 6 -0.0790 2.9121 2.6697 8 7 0.7765 3.1644 3.6363 9 14 -1.8878 3.3223 2.8927 10 1 -2.5909 2.1551 3.4829 11 1 -2.0223 4.4911 3.7986 12 1 -2.4880 3.6466 1.5738 13 6 3.4316 1.4441 -0.4013 14 1 3.7995 2.4645 -0.2932 15 6 4.2554 0.5065 0.4857 16 6 5.7142 0.5262 0.0238 17 7 5.7908 0.0960 -1.3781 18 6 7.1878 -0.0302 -1.8145 19 6 7.8508 -1.1525 -1.0584 20 6 8.4955 -0.8945 0.1369 21 6 9.1003 -1.9247 0.8324 22 6 9.0676 -3.2116 0.3285 23 6 8.4274 -3.4687 -0.8694 24 6 7.8193 -2.4391 -1.5630 25 6 5.0463 1.0084 -2.2551 26 1 5.1478 0.6812 -3.2899 27 6 5.6072 2.4246 -2.1110 28 6 3.5675 1.0031 -1.8614 29 1 -0.3633 0.6773 -0.7728 30 1 -0.3633 -1.0080 -0.2002 31 1 -0.3633 0.3306 0.9730 32 1 1.8934 -0.5140 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.1350 1.3277 2.0969 35 1 2.4080 2.9295 1.3702 36 1 0.4682 3.5638 4.4648 37 1 3.8625 -0.5072 0.4073 38 1 4.1971 0.8402 1.5217 39 1 6.1107 1.5374 0.1156 40 1 6.3008 -0.1515 0.6442 41 1 7.2167 -0.2449 -2.8828 42 1 7.7158 0.9027 -1.6170 43 1 8.5236 0.1113 0.5291 44 1 9.6008 -1.7238 1.7681 45 1 9.5424 -4.0160 0.8706 46 1 8.4022 -4.4740 -1.2633 47 1 7.3191 -2.6400 -2.4989 48 1 5.5055 2.7522 -1.0764 49 1 6.6605 2.4286 -2.3915 50 1 5.0550 3.1021 -2.7623 51 1 3.1638 -0.0027 -1.9767 52 1 3.0178 1.6923 -2.5023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256552216.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:17 Heat of formation + Delta-G solvation = 34.997935 kcal Electronic energy + Delta-G solvation = -27574.590277 eV Core-core repulsion = 24152.739938 eV Total energy + Delta-G solvation = -3421.850339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18249 -38.98155 -36.76439 -33.46678 -32.41819 -31.54619 -30.98973 -30.58076 -29.04565 -27.66750 -26.38784 -25.25058 -23.09774 -22.45862 -22.35568 -22.28927 -21.03685 -19.77476 -17.96902 -16.89661 -16.61095 -15.90701 -15.61937 -15.36685 -15.06804 -14.55524 -14.41438 -14.06200 -13.74618 -13.68008 -13.51614 -13.37773 -13.18437 -12.89294 -12.67083 -12.31072 -12.11616 -12.10544 -11.75681 -11.52311 -11.41755 -11.25949 -11.13678 -11.04537 -10.94991 -10.85027 -10.77100 -10.63103 -10.28772 -10.18353 -10.03693 -9.85199 -9.22510 -9.01311 -8.98188 -8.88152 -8.34239 -8.17298 -7.11865 -5.96806 -3.95040 1.22189 1.30091 3.34044 3.40615 3.44731 3.57858 4.14025 4.45919 4.63586 4.72561 4.84937 4.88727 4.97626 5.03704 5.12208 5.23077 5.28943 5.35382 5.37673 5.38841 5.42293 5.54590 5.58790 5.64446 5.76955 5.82205 5.89288 5.91356 5.93576 5.97643 6.06070 6.09383 6.23376 6.26769 6.33660 6.38605 6.39542 6.43429 6.47592 6.52043 6.56885 6.71709 6.81109 6.88466 6.98760 7.15393 7.22912 7.28689 7.44108 7.44337 7.91329 8.20389 8.31598 8.65105 9.11640 9.66641 11.13869 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.003010 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.552868 B = 9301.577740 C = 9661.857775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 N -0.531 5.531 4 C 0.194 3.806 5 C -0.501 4.501 6 H 0.073 0.927 7 C 0.052 3.948 8 N -0.901 5.901 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.086 3.914 14 H 0.072 0.928 15 C -0.146 4.146 16 C 0.055 3.945 17 N -0.524 5.524 18 C 0.091 3.909 19 C -0.072 4.072 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.100 4.100 25 C 0.085 3.915 26 H 0.078 0.922 27 C -0.189 4.189 28 C -0.101 4.101 29 H 0.053 0.947 30 H 0.028 0.972 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.022 0.978 34 H -0.006 1.006 35 H 0.022 0.978 36 H 0.259 0.741 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.043 0.957 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.065 0.935 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.069 0.931 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.402 -9.447 -10.857 21.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.062 4.062 3 N -0.254 5.254 4 C 0.069 3.931 5 C -0.540 4.540 6 H 0.091 0.909 7 C -0.149 4.149 8 N -0.541 5.541 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.198 1.198 13 C -0.023 4.023 14 H 0.090 0.910 15 C -0.186 4.186 16 C -0.073 4.073 17 N -0.248 5.248 18 C -0.036 4.036 19 C -0.073 4.073 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.118 4.118 25 C -0.024 4.024 26 H 0.096 0.904 27 C -0.248 4.248 28 C -0.139 4.139 29 H 0.072 0.928 30 H 0.047 0.953 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.012 0.988 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.084 0.916 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.088 0.912 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 15.874 -9.542 -11.057 21.571 hybrid contribution -0.030 0.620 1.101 1.265 sum 15.844 -8.922 -9.955 20.730 Atomic orbital electron populations 1.22055 0.95480 0.98478 1.04473 1.21879 0.96159 0.89858 0.98340 1.62352 1.13894 1.16069 1.33078 1.19728 0.97281 0.93353 0.82722 1.21429 0.93474 1.38927 1.00143 0.90872 1.25002 0.97572 0.96163 0.96149 1.69966 1.34003 1.44361 1.05817 0.86581 0.85497 0.77857 0.78019 1.20807 1.21425 1.19786 1.21741 0.89271 0.98037 0.93288 0.90969 1.22295 0.94308 1.01616 1.00353 1.22150 0.98020 0.98444 0.88706 1.62173 1.10405 1.49331 1.02876 1.21031 0.88794 0.95053 0.98717 1.19785 0.97248 0.94912 0.95339 1.21088 0.98025 0.99259 0.94853 1.21115 0.99955 0.93082 0.99813 1.21127 0.99976 0.96773 0.96357 1.21141 0.98392 0.99011 0.95537 1.21012 0.98527 0.92141 1.00129 1.21705 0.94409 0.89934 0.96347 0.90357 1.22526 1.00502 0.98616 1.03145 1.21659 0.93273 1.02147 0.96820 0.92785 0.95257 0.89693 0.92955 0.96005 0.98819 0.96010 0.93129 0.91275 0.91384 0.94707 0.90979 0.90182 0.93935 0.86380 0.86246 0.86378 0.86264 0.86075 0.91590 0.93206 0.91831 0.91212 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.50 37.16 0.32 -2.60 16 2 C 0.07 1.29 4.38 -3.82 -0.02 1.27 16 3 N -0.53 -11.24 4.43 -227.93 -1.01 -12.25 16 4 C 0.19 4.98 4.12 -4.98 -0.02 4.96 16 5 C -0.50 -13.78 7.08 -34.44 -0.24 -14.02 16 6 H 0.07 1.98 5.59 -52.48 -0.29 1.69 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -26.76 13.29 55.43 0.74 -26.03 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.09 1.52 1.94 -67.59 -0.13 1.38 16 14 H 0.07 1.35 6.26 -51.93 -0.33 1.02 16 15 C -0.15 -2.45 4.73 -26.65 -0.13 -2.58 16 16 C 0.05 0.76 4.87 -3.84 -0.02 0.74 16 17 N -0.52 -6.55 4.59 -228.14 -1.05 -7.60 16 18 C 0.09 0.96 4.57 -4.98 -0.02 0.94 16 19 C -0.07 -0.79 4.89 -104.62 -0.51 -1.30 16 20 C -0.11 -1.21 7.90 -39.58 -0.31 -1.52 16 21 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 24 C -0.10 -1.03 9.70 -39.58 -0.38 -1.41 16 25 C 0.08 1.03 2.92 -67.73 -0.20 0.84 16 26 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 27 C -0.19 -2.20 8.18 37.16 0.30 -1.89 16 28 C -0.10 -1.48 4.90 -26.65 -0.13 -1.61 16 29 H 0.05 1.08 7.77 -51.93 -0.40 0.67 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 1.92 5.76 -51.93 -0.30 1.62 16 32 H 0.05 0.92 5.87 -51.92 -0.30 0.62 16 33 H 0.02 0.45 6.91 -51.93 -0.36 0.09 16 34 H -0.01 -0.17 7.24 -51.93 -0.38 -0.54 16 35 H 0.02 0.60 7.76 -51.93 -0.40 0.20 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.07 1.21 6.59 -51.93 -0.34 0.87 16 38 H 0.07 1.28 7.25 -51.93 -0.38 0.91 16 39 H 0.03 0.48 6.19 -51.93 -0.32 0.16 16 40 H 0.07 1.00 5.77 -51.93 -0.30 0.70 16 41 H 0.08 0.75 7.92 -51.93 -0.41 0.34 16 42 H 0.04 0.44 6.90 -51.93 -0.36 0.08 16 43 H 0.12 1.17 7.97 -52.49 -0.42 0.75 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 46 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 47 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 48 H 0.07 0.87 4.80 -51.93 -0.25 0.62 16 49 H 0.05 0.51 6.77 -51.93 -0.35 0.16 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.07 1.07 6.18 -51.93 -0.32 0.74 16 52 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -29.34 379.96 -12.13 -41.47 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.72 Total: 2.24 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -2.79 Total: -20.19 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -1.32 Total: -45.87 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.34 -12.13 -41.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256552216.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.465 kcal (2) G-P(sol) polarization free energy of solvation -29.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds