Wall clock time and date at job start Tue Mar 31 2020 11:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47170 * 2 1 4 4 C 1.46899 * 111.00120 * 73.05909 * 3 2 1 5 5 C 1.50697 * 109.47045 * 285.52336 * 4 3 2 6 6 H 1.08005 * 119.99914 * 358.18645 * 5 4 3 7 7 C 1.37874 * 120.00054 * 178.19061 * 5 4 3 8 8 N 1.31520 * 119.99928 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00039 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47083 * 90.00134 * 9 7 5 11 11 H 1.48497 * 109.47131 * 209.99825 * 9 7 5 12 12 H 1.48490 * 109.47399 * 329.99940 * 9 7 5 13 13 C 1.46901 * 110.99613 * 197.01329 * 3 2 1 14 14 H 1.09006 * 109.57008 * 185.88471 * 13 3 2 15 15 C 1.53116 * 109.52512 * 306.04251 * 13 3 2 16 16 C 1.53040 * 109.27744 * 177.56004 * 15 13 3 17 17 N 1.46839 * 109.51619 * 300.82759 * 16 15 13 18 18 C 1.46900 * 111.00014 * 185.83262 * 17 16 15 19 19 C 1.50700 * 109.46983 * 66.04668 * 18 17 16 20 20 C 1.38240 * 120.00052 * 269.72659 * 19 18 17 21 21 C 1.38233 * 119.99803 * 179.81159 * 20 19 18 22 22 C 1.38238 * 120.00389 * 0.39747 * 21 20 19 23 23 C 1.38238 * 119.99826 * 359.85635 * 22 21 20 24 24 C 1.38236 * 120.00009 * 90.00477 * 19 18 17 25 25 C 1.46822 * 111.21018 * 61.74764 * 17 16 15 26 26 H 1.09002 * 109.46865 * 178.23027 * 25 17 16 27 27 C 1.53008 * 109.45494 * 58.26101 * 25 17 16 28 28 C 1.53032 * 109.52109 * 298.24744 * 25 17 16 29 29 H 1.08996 * 109.47266 * 48.76877 * 1 2 3 30 30 H 1.09003 * 109.47038 * 168.76498 * 1 2 3 31 31 H 1.08996 * 109.47146 * 288.76853 * 1 2 3 32 32 H 1.09008 * 109.47166 * 239.99414 * 2 1 3 33 33 H 1.08998 * 109.47324 * 120.00042 * 2 1 3 34 34 H 1.09001 * 109.46864 * 45.51881 * 4 3 2 35 35 H 1.08997 * 109.47281 * 165.51979 * 4 3 2 36 36 H 0.97001 * 119.99755 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.50424 * 57.62120 * 15 13 3 38 38 H 1.08997 * 109.53709 * 297.52138 * 15 13 3 39 39 H 1.09005 * 109.46169 * 60.84102 * 16 15 13 40 40 H 1.09000 * 109.46286 * 180.81518 * 16 15 13 41 41 H 1.08999 * 109.47331 * 186.04620 * 18 17 16 42 42 H 1.08997 * 109.47349 * 306.05030 * 18 17 16 43 43 H 1.07993 * 119.99902 * 0.02562 * 20 19 18 44 44 H 1.07999 * 120.00016 * 180.23007 * 21 20 19 45 45 H 1.07995 * 120.00471 * 179.83735 * 22 21 20 46 46 H 1.07993 * 120.00184 * 179.97438 * 23 22 21 47 47 H 1.07999 * 120.00039 * 359.97105 * 24 19 18 48 48 H 1.09004 * 109.46790 * 299.95539 * 27 25 17 49 49 H 1.08994 * 109.47469 * 59.95754 * 27 25 17 50 50 H 1.09000 * 109.46958 * 179.97438 * 27 25 17 51 51 H 1.08995 * 109.50550 * 299.24032 * 28 25 17 52 52 H 1.08996 * 109.50686 * 179.11431 * 28 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8184 2.0146 1.3119 5 6 0.3592 2.3449 1.4920 6 1 -0.3434 2.1374 0.6983 7 6 -0.0790 2.9121 2.6697 8 7 0.7765 3.1644 3.6363 9 14 -1.8878 3.3223 2.8927 10 1 -2.5909 2.1551 3.4829 11 1 -2.0223 4.4911 3.7986 12 1 -2.4880 3.6466 1.5738 13 6 3.4316 1.4441 -0.4013 14 1 3.7995 2.4645 -0.2932 15 6 4.2554 0.5065 0.4857 16 6 5.7142 0.5262 0.0238 17 7 5.7908 0.0960 -1.3781 18 6 7.1878 -0.0302 -1.8145 19 6 7.8508 -1.1525 -1.0584 20 6 8.4955 -0.8945 0.1369 21 6 9.1003 -1.9247 0.8324 22 6 9.0676 -3.2116 0.3285 23 6 8.4274 -3.4687 -0.8694 24 6 7.8193 -2.4391 -1.5630 25 6 5.0463 1.0084 -2.2551 26 1 5.1478 0.6812 -3.2899 27 6 5.6072 2.4246 -2.1110 28 6 3.5675 1.0031 -1.8614 29 1 -0.3633 0.6773 -0.7728 30 1 -0.3633 -1.0080 -0.2002 31 1 -0.3633 0.3306 0.9730 32 1 1.8934 -0.5140 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.1350 1.3277 2.0969 35 1 2.4080 2.9295 1.3702 36 1 0.4682 3.5638 4.4648 37 1 3.8625 -0.5072 0.4073 38 1 4.1971 0.8402 1.5217 39 1 6.1107 1.5374 0.1156 40 1 6.3008 -0.1515 0.6442 41 1 7.2167 -0.2449 -2.8828 42 1 7.7158 0.9027 -1.6170 43 1 8.5236 0.1113 0.5291 44 1 9.6008 -1.7238 1.7681 45 1 9.5424 -4.0160 0.8706 46 1 8.4022 -4.4740 -1.2633 47 1 7.3191 -2.6400 -2.4989 48 1 5.5055 2.7522 -1.0764 49 1 6.6605 2.4286 -2.3915 50 1 5.0550 3.1021 -2.7623 51 1 3.1638 -0.0027 -1.9767 52 1 3.0178 1.6923 -2.5023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256552216.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:16 Heat of formation + Delta-G solvation = 18.503539 kcal Electronic energy + Delta-G solvation = -27575.305527 eV Core-core repulsion = 24152.739938 eV Total energy + Delta-G solvation = -3422.565590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.28027 -39.92386 -38.20087 -34.97759 -34.03502 -32.82755 -31.82446 -31.60596 -30.70889 -29.04050 -27.89538 -26.33556 -24.30139 -24.10451 -23.83203 -23.20970 -21.93274 -21.24367 -19.27501 -18.52229 -17.64886 -17.26903 -16.81949 -16.41936 -16.25641 -16.10165 -15.59309 -15.43390 -15.34360 -14.88850 -14.58726 -14.37070 -14.24262 -14.12158 -14.05479 -13.57592 -13.36858 -13.31121 -13.09925 -12.98089 -12.80056 -12.75210 -12.60335 -12.48605 -12.36321 -12.23033 -11.96234 -11.94767 -11.80481 -11.59151 -11.50085 -11.29971 -11.04275 -10.80543 -10.51589 -9.76132 -9.66030 -9.16155 -8.89859 -8.14170 -6.20321 0.46533 0.55434 1.41447 1.42203 1.53626 2.42734 2.75334 3.17461 3.21048 3.31938 3.77568 3.85730 3.96999 4.01495 4.10682 4.18563 4.20156 4.28575 4.31511 4.36945 4.40837 4.51647 4.55247 4.61348 4.63322 4.65546 4.71639 4.78081 4.78930 4.84053 4.87419 5.00709 5.05887 5.07932 5.11658 5.16303 5.18029 5.20912 5.24920 5.28608 5.31863 5.44950 5.49505 5.60884 5.66774 5.70302 5.75087 5.76610 6.13261 6.14810 6.15747 6.23650 6.47477 6.74486 6.94479 7.46398 8.96559 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.003010 C = 0.002897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.552868 B = 9301.577740 C = 9661.857775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.069 3.931 3 N -0.536 5.536 4 C 0.214 3.786 5 C -0.509 4.509 6 H 0.078 0.922 7 C -0.004 4.004 8 N -0.940 5.940 9 Si 0.961 3.039 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.263 1.263 13 C 0.085 3.915 14 H 0.056 0.944 15 C -0.137 4.137 16 C 0.068 3.932 17 N -0.527 5.527 18 C 0.095 3.905 19 C -0.086 4.086 20 C -0.129 4.129 21 C -0.133 4.133 22 C -0.131 4.131 23 C -0.129 4.129 24 C -0.109 4.109 25 C 0.089 3.911 26 H 0.105 0.895 27 C -0.185 4.185 28 C -0.091 4.091 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.006 0.994 34 H -0.039 1.039 35 H -0.009 1.009 36 H 0.260 0.740 37 H 0.062 0.938 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.118 0.882 44 H 0.132 0.868 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.133 0.867 48 H 0.043 0.957 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.069 0.931 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.529 -10.701 -13.107 23.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 N -0.259 5.259 4 C 0.088 3.912 5 C -0.547 4.547 6 H 0.096 0.904 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.787 3.213 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.187 1.187 13 C -0.024 4.024 14 H 0.075 0.925 15 C -0.176 4.176 16 C -0.061 4.061 17 N -0.251 5.251 18 C -0.031 4.031 19 C -0.087 4.087 20 C -0.147 4.147 21 C -0.151 4.151 22 C -0.149 4.149 23 C -0.147 4.147 24 C -0.128 4.128 25 C -0.019 4.019 26 H 0.123 0.877 27 C -0.244 4.244 28 C -0.129 4.129 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.024 0.976 34 H -0.021 1.021 35 H 0.009 0.991 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.064 0.936 43 H 0.136 0.864 44 H 0.150 0.850 45 H 0.156 0.844 46 H 0.157 0.843 47 H 0.151 0.849 48 H 0.062 0.938 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.012 -10.808 -13.335 23.474 hybrid contribution 0.005 0.955 1.797 2.035 sum 16.018 -9.853 -11.538 22.063 Atomic orbital electron populations 1.21944 0.95264 1.00279 1.02389 1.21915 0.96313 0.88825 0.98872 1.62313 1.16566 1.17080 1.29906 1.19319 0.96094 0.91552 0.84222 1.21755 0.94239 1.38381 1.00310 0.90384 1.25896 1.02223 0.96085 0.95868 1.70111 1.36242 1.45423 1.06399 0.85492 0.79897 0.77678 0.78274 1.19972 1.21226 1.18689 1.21809 0.87270 0.97605 0.95673 0.92547 1.22125 0.96528 1.00565 0.98392 1.21929 0.95484 0.98544 0.90125 1.62137 1.12063 1.49173 1.01747 1.21068 0.87218 0.95220 0.99642 1.19896 0.97782 0.95392 0.95618 1.21231 0.98627 0.99614 0.95258 1.21376 1.00022 0.93328 1.00400 1.21443 0.99748 0.97135 0.96540 1.21453 0.97861 0.99906 0.95495 1.21237 0.98719 0.92099 1.00728 1.21709 0.92443 0.90347 0.97409 0.87676 1.22474 1.01745 0.98278 1.01858 1.21581 0.95536 1.01817 0.93992 0.92952 0.92020 0.92995 0.90073 0.97606 1.02136 0.99139 0.93092 0.91933 0.94754 0.94807 0.90880 0.88321 0.93587 0.86417 0.84998 0.84431 0.84275 0.84947 0.93845 0.91423 0.91298 0.91230 0.90808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.47 8.50 71.98 0.61 -4.86 16 2 C 0.07 2.68 4.38 86.30 0.38 3.06 16 3 N -0.54 -23.26 4.43 -875.03 -3.88 -27.14 16 4 C 0.21 11.60 4.12 85.56 0.35 11.96 16 5 C -0.51 -28.73 7.08 25.60 0.18 -28.55 16 6 H 0.08 4.26 5.59 -2.91 -0.02 4.24 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.94 -57.76 13.29 21.45 0.28 -57.48 16 9 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 13 C 0.09 3.07 1.94 45.00 0.09 3.16 16 14 H 0.06 2.21 6.26 -2.38 -0.01 2.19 16 15 C -0.14 -4.77 4.73 30.65 0.14 -4.62 16 16 C 0.07 1.89 4.87 86.33 0.42 2.31 16 17 N -0.53 -12.26 4.59 -875.71 -4.02 -16.28 16 18 C 0.10 1.79 4.57 85.56 0.39 2.19 16 19 C -0.09 -1.75 4.89 -19.86 -0.10 -1.85 16 20 C -0.13 -2.65 7.90 22.27 0.18 -2.47 16 21 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 22 C -0.13 -2.25 10.05 22.27 0.22 -2.02 16 23 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 24 C -0.11 -2.04 9.70 22.27 0.22 -1.83 16 25 C 0.09 1.97 2.92 44.94 0.13 2.10 16 26 H 0.11 1.88 8.01 -2.39 -0.02 1.86 16 27 C -0.18 -3.99 8.18 71.98 0.59 -3.40 16 28 C -0.09 -2.55 4.90 30.65 0.15 -2.39 16 29 H 0.05 2.02 7.77 -2.39 -0.02 2.00 16 30 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.05 2.35 5.76 -2.39 -0.01 2.34 16 32 H 0.08 2.72 5.87 -2.38 -0.01 2.71 16 33 H 0.01 0.24 6.91 -2.39 -0.02 0.23 16 34 H -0.04 -2.33 7.24 -2.39 -0.02 -2.35 16 35 H -0.01 -0.56 7.76 -2.39 -0.02 -0.58 16 36 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.06 2.24 6.59 -2.39 -0.02 2.23 16 38 H 0.03 1.40 7.25 -2.39 -0.02 1.38 16 39 H 0.03 0.95 6.19 -2.38 -0.01 0.94 16 40 H 0.07 2.04 5.77 -2.39 -0.01 2.02 16 41 H 0.10 1.52 7.92 -2.39 -0.02 1.50 16 42 H 0.05 0.85 6.90 -2.39 -0.02 0.83 16 43 H 0.12 2.32 7.97 -2.91 -0.02 2.30 16 44 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 45 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 46 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 48 H 0.04 1.14 4.80 -2.39 -0.01 1.12 16 49 H 0.07 1.22 6.77 -2.39 -0.02 1.20 16 50 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.07 1.96 6.18 -2.39 -0.01 1.94 16 52 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -65.30 379.96 0.16 -65.13 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.89 Total: 20.07 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 4.87 Total: -31.25 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -7.62 Total: -100.89 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.30 0.16 -65.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256552216.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.638 kcal (2) G-P(sol) polarization free energy of solvation -65.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds