Wall clock time and date at job start Tue Mar 31 2020 11:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46822 * 2 1 4 4 C 1.46910 * 110.99590 * 163.87875 * 3 2 1 5 5 C 1.50702 * 109.46981 * 293.95371 * 4 3 2 6 6 H 1.08004 * 119.99953 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99861 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00102 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 119.99797 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47335 * 59.99998 * 9 7 5 11 11 H 1.48504 * 109.47047 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47246 * 299.99776 * 9 7 5 13 13 C 1.46896 * 111.00414 * 287.83150 * 3 2 1 14 14 H 1.09002 * 109.52127 * 47.89611 * 13 3 2 15 15 C 1.53119 * 109.52418 * 287.70346 * 13 3 2 16 16 C 1.53041 * 109.27840 * 182.44139 * 15 13 3 17 17 N 1.46847 * 109.52278 * 59.17932 * 16 15 13 18 18 C 1.46902 * 110.99639 * 174.15873 * 17 16 15 19 19 C 1.50692 * 109.47382 * 314.21325 * 18 17 16 20 20 C 1.38237 * 119.99782 * 269.72806 * 19 18 17 21 21 C 1.38235 * 120.00027 * 179.78786 * 20 19 18 22 22 C 1.38238 * 119.99889 * 0.44043 * 21 20 19 23 23 C 1.38231 * 120.00024 * 359.80998 * 22 21 20 24 24 C 1.38233 * 120.00058 * 359.97438 * 23 22 21 25 25 C 1.46851 * 111.19826 * 298.25587 * 17 16 15 26 26 H 1.08993 * 109.45149 * 181.75173 * 25 17 16 27 27 C 1.52995 * 109.46165 * 301.72833 * 25 17 16 28 28 C 1.53034 * 109.52048 * 61.74349 * 25 17 16 29 29 H 1.08997 * 109.47213 * 306.32575 * 1 2 3 30 30 H 1.09003 * 109.47042 * 66.32289 * 1 2 3 31 31 H 1.08995 * 109.47024 * 186.32015 * 1 2 3 32 32 H 1.09007 * 109.46921 * 240.00435 * 2 1 3 33 33 H 1.08993 * 109.47434 * 120.00572 * 2 1 3 34 34 H 1.09001 * 109.47014 * 173.95836 * 4 3 2 35 35 H 1.08997 * 109.47023 * 53.95521 * 4 3 2 36 36 H 0.97001 * 120.00372 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.50102 * 302.38026 * 15 13 3 38 38 H 1.09002 * 109.50396 * 62.49720 * 15 13 3 39 39 H 1.08999 * 109.46242 * 299.16108 * 16 15 13 40 40 H 1.08997 * 109.45983 * 179.19354 * 16 15 13 41 41 H 1.09000 * 109.46908 * 74.21245 * 18 17 16 42 42 H 1.08996 * 109.46850 * 194.20955 * 18 17 16 43 43 H 1.07997 * 120.00123 * 359.97438 * 20 19 18 44 44 H 1.08003 * 119.99922 * 180.27000 * 21 20 19 45 45 H 1.08000 * 119.99724 * 179.82960 * 22 21 20 46 46 H 1.08000 * 119.99972 * 180.02562 * 23 22 21 47 47 H 1.07999 * 120.00172 * 179.97438 * 24 23 22 48 48 H 1.08997 * 109.46832 * 180.02562 * 27 25 17 49 49 H 1.08999 * 109.47148 * 300.05256 * 27 25 17 50 50 H 1.09003 * 109.47271 * 60.05879 * 27 25 17 51 51 H 1.08995 * 109.50651 * 180.87524 * 28 25 17 52 52 H 1.09001 * 109.50502 * 60.75846 * 28 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4373 1.4422 0.3808 5 6 3.5898 1.0079 1.8159 6 1 2.7206 0.7181 2.3876 7 6 4.8390 0.9807 2.3988 8 7 5.8974 1.3341 1.7027 9 14 5.0282 0.4418 4.1773 10 1 4.5313 -0.9495 4.3285 11 1 6.4611 0.5008 4.5627 12 1 4.2424 1.3461 5.0548 13 6 1.7992 2.0214 -1.3055 14 1 0.7748 1.8399 -1.6308 15 6 2.7743 1.4367 -2.3310 16 6 2.5815 2.1461 -3.6733 17 7 2.8226 3.5851 -3.5069 18 6 2.7823 4.2786 -4.8013 19 6 3.5838 3.5010 -5.8131 20 6 4.9301 3.7669 -5.9802 21 6 5.6664 3.0506 -6.9052 22 6 5.0545 2.0748 -7.6696 23 6 3.7072 1.8125 -7.5061 24 6 2.9718 2.5257 -6.5780 25 6 1.8673 4.1778 -2.5622 26 1 2.0516 5.2492 -2.4839 27 6 0.4413 3.9410 -3.0633 28 6 2.0388 3.5291 -1.1868 29 1 -0.3633 0.6087 0.8279 30 1 -0.3633 0.4127 -0.9412 31 1 -0.3633 -1.0214 0.1131 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.8026 2.4631 0.2694 35 1 4.0135 0.7778 -0.2630 36 1 6.7763 1.3146 2.1127 37 1 3.7976 1.5839 -1.9853 38 1 2.5801 0.3709 -2.4514 39 1 1.5622 1.9869 -4.0250 40 1 3.2843 1.7419 -4.4018 41 1 1.7490 4.3573 -5.1393 42 1 3.2057 5.2770 -4.6919 43 1 5.4072 4.5321 -5.3859 44 1 6.7192 3.2553 -7.0327 45 1 5.6292 1.5171 -8.3942 46 1 3.2292 1.0498 -8.1030 47 1 1.9191 2.3211 -6.4505 48 1 -0.2679 4.3813 -2.3624 49 1 0.3189 4.4030 -4.0429 50 1 0.2567 2.8695 -3.1412 51 1 1.3192 3.9582 -0.4897 52 1 3.0505 3.7091 -0.8231 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256552217.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:19 Heat of formation + Delta-G solvation = 34.256208 kcal Electronic energy + Delta-G solvation = -27823.098877 eV Core-core repulsion = 24401.216374 eV Total energy + Delta-G solvation = -3421.882503 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.21982 -38.89829 -36.69796 -33.29148 -32.53594 -31.46645 -30.96183 -30.53886 -29.36450 -27.36334 -26.33090 -25.17588 -23.02388 -22.64423 -22.35976 -22.31464 -20.93303 -19.62838 -17.93313 -16.81790 -16.37234 -16.13610 -15.57377 -15.29657 -14.79848 -14.59499 -14.42581 -14.05214 -13.90609 -13.58239 -13.45414 -13.30415 -13.09296 -12.92894 -12.61321 -12.35066 -12.21512 -11.99570 -11.88786 -11.71349 -11.45125 -11.26831 -11.10153 -11.04116 -10.92716 -10.79365 -10.74891 -10.58233 -10.30421 -10.05204 -9.95407 -9.89023 -9.38106 -9.05926 -8.95641 -8.82963 -8.34497 -8.01212 -7.05939 -5.95030 -3.95777 1.25975 1.34967 3.37063 3.41194 3.44101 3.64296 4.22140 4.47923 4.66939 4.77170 4.88766 4.92823 5.03176 5.07099 5.22948 5.28844 5.34900 5.39575 5.41881 5.42884 5.49294 5.63734 5.65254 5.68592 5.74594 5.86968 5.87937 5.92177 5.95088 5.98615 6.04537 6.05170 6.12991 6.26632 6.33687 6.36328 6.39151 6.44670 6.49074 6.53788 6.58441 6.73969 6.81862 6.89184 6.92774 6.95291 7.27739 7.34066 7.45632 7.51689 7.88969 8.22433 8.33857 8.67662 9.12057 9.67651 11.15354 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013906 B = 0.003572 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.004525 B = 7837.894218 C = 8702.410126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.054 3.946 3 N -0.531 5.531 4 C 0.192 3.808 5 C -0.508 4.508 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.087 3.913 14 H 0.064 0.936 15 C -0.150 4.150 16 C 0.058 3.942 17 N -0.521 5.521 18 C 0.089 3.911 19 C -0.077 4.077 20 C -0.099 4.099 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.114 4.114 25 C 0.084 3.916 26 H 0.079 0.921 27 C -0.188 4.188 28 C -0.100 4.100 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.018 0.982 33 H 0.083 0.917 34 H 0.035 0.965 35 H -0.007 1.007 36 H 0.260 0.740 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.062 0.938 51 H 0.069 0.931 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 4.182 -17.903 19.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 N -0.254 5.254 4 C 0.068 3.932 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.022 4.022 14 H 0.082 0.918 15 C -0.190 4.190 16 C -0.070 4.070 17 N -0.245 5.245 18 C -0.038 4.038 19 C -0.077 4.077 20 C -0.117 4.117 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.133 4.133 25 C -0.025 4.025 26 H 0.098 0.902 27 C -0.247 4.247 28 C -0.138 4.138 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.037 0.963 33 H 0.101 0.899 34 H 0.053 0.947 35 H 0.011 0.989 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.142 0.858 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.886 4.525 -17.294 19.156 hybrid contribution -0.059 -0.948 -0.027 0.950 sum -6.945 3.577 -17.321 19.001 Atomic orbital electron populations 1.21794 0.96948 1.00206 1.01117 1.21962 0.93832 0.90839 1.00807 1.62343 1.22984 1.15593 1.24448 1.19742 0.81217 0.97075 0.95215 1.21178 0.92697 1.43939 0.96845 0.92136 1.24960 0.95918 0.95735 0.97874 1.69953 0.98574 1.48565 1.36566 0.86629 0.76789 0.79102 0.85267 1.20405 1.21437 1.20256 1.21681 0.97153 0.94206 0.89194 0.91751 1.22300 1.03068 0.98613 0.94975 1.22153 0.98807 0.87726 0.98310 1.62283 1.50655 1.03130 1.08408 1.21132 0.97571 0.97205 0.87918 1.19799 0.94566 0.96892 0.96477 1.21077 0.93403 0.99804 0.97427 1.21169 0.99835 0.96440 0.96439 1.21128 0.94981 0.98206 0.99873 1.21082 0.94484 0.99845 0.98730 1.21057 0.99803 0.96165 0.96271 1.21708 0.88817 0.98825 0.93106 0.90246 1.22510 0.98758 1.02421 1.00962 1.21608 1.03573 0.94708 0.93937 0.92223 0.94086 0.93580 0.96337 0.89874 0.94723 0.98934 0.92998 0.89882 0.92388 0.95320 0.90830 0.93816 0.90084 0.85781 0.86128 0.86353 0.86317 0.86547 0.91927 0.93158 0.91948 0.91253 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.86 37.16 0.37 -1.91 16 2 C 0.05 1.06 5.44 -3.82 -0.02 1.04 16 3 N -0.53 -11.28 4.39 -227.93 -1.00 -12.28 16 4 C 0.19 4.96 3.59 -4.97 -0.02 4.94 16 5 C -0.51 -14.29 8.28 -34.44 -0.29 -14.58 16 6 H 0.06 1.69 7.26 -52.48 -0.38 1.31 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.09 1.54 1.84 -67.59 -0.12 1.42 16 14 H 0.06 1.07 4.90 -51.93 -0.25 0.82 16 15 C -0.15 -2.65 4.65 -26.65 -0.12 -2.78 16 16 C 0.06 0.85 4.28 -3.83 -0.02 0.84 16 17 N -0.52 -7.33 4.75 -228.13 -1.08 -8.42 16 18 C 0.09 1.03 5.30 -4.98 -0.03 1.01 16 19 C -0.08 -0.91 4.12 -104.63 -0.43 -1.34 16 20 C -0.10 -1.15 9.70 -39.58 -0.38 -1.54 16 21 C -0.12 -1.30 10.05 -39.58 -0.40 -1.69 16 22 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 23 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 24 C -0.11 -1.26 7.79 -39.58 -0.31 -1.57 16 25 C 0.08 1.15 2.93 -67.72 -0.20 0.95 16 26 H 0.08 1.02 8.12 -51.93 -0.42 0.59 16 27 C -0.19 -2.20 8.20 37.15 0.30 -1.89 16 28 C -0.10 -1.69 4.93 -26.65 -0.13 -1.82 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.60 6.82 -51.93 -0.35 0.25 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.02 0.36 6.42 -51.93 -0.33 0.02 16 33 H 0.08 1.81 6.59 -51.93 -0.34 1.47 16 34 H 0.03 0.96 6.15 -51.93 -0.32 0.65 16 35 H -0.01 -0.20 6.78 -51.93 -0.35 -0.55 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 1.76 6.40 -51.93 -0.33 1.43 16 38 H 0.06 1.02 6.69 -51.93 -0.35 0.68 16 39 H 0.03 0.39 6.19 -51.93 -0.32 0.07 16 40 H 0.07 1.11 5.64 -51.93 -0.29 0.82 16 41 H 0.04 0.47 6.01 -51.93 -0.31 0.16 16 42 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 43 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 44 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.05 0.52 6.35 -51.93 -0.33 0.19 16 50 H 0.06 0.78 4.80 -51.93 -0.25 0.53 16 51 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 52 H 0.08 1.60 6.35 -51.93 -0.33 1.27 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -29.76 380.54 -11.96 -41.72 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -8.63 Total: 3.26 kcal Atomic # 6 Polarization: -18.05 SS G_CDS: -2.69 Total: -20.74 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: -1.35 Total: -46.80 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.76 -11.96 -41.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256552217.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.973 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds