Wall clock time and date at job start Tue Mar 31 2020 11:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46902 * 109.47696 * 2 1 4 4 C 1.46897 * 110.99840 * 295.08879 * 3 2 1 5 5 C 1.50695 * 109.47366 * 292.49210 * 4 3 2 6 6 H 1.08001 * 119.99644 * 4.22806 * 5 4 3 7 7 C 1.37872 * 120.00566 * 184.23179 * 5 4 3 8 8 N 1.31518 * 119.99473 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00508 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46860 * 59.99967 * 9 7 5 11 11 H 1.48498 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47274 * 299.99962 * 9 7 5 13 13 C 1.46905 * 110.99561 * 59.04017 * 3 2 1 14 14 H 1.09000 * 109.52200 * 296.17774 * 13 3 2 15 15 C 1.53117 * 109.52182 * 176.04887 * 13 3 2 16 16 C 1.53029 * 109.28156 * 182.44173 * 15 13 3 17 17 N 1.46849 * 109.52432 * 59.17890 * 16 15 13 18 18 C 1.46900 * 111.00021 * 174.16652 * 17 16 15 19 19 C 1.50696 * 109.46956 * 296.49232 * 18 17 16 20 20 C 1.38233 * 120.00038 * 276.22752 * 19 18 17 21 21 C 1.38239 * 120.00172 * 179.80627 * 20 19 18 22 22 C 1.38240 * 119.99582 * 0.42332 * 21 20 19 23 23 C 1.38240 * 119.99868 * 359.81076 * 22 21 20 24 24 C 1.38231 * 120.00064 * 359.97438 * 23 22 21 25 25 C 1.46852 * 111.19376 * 298.25835 * 17 16 15 26 26 H 1.08994 * 109.46668 * 301.72247 * 25 17 16 27 27 C 1.53009 * 109.46120 * 181.75618 * 25 17 16 28 28 C 1.53040 * 109.52427 * 61.74350 * 25 17 16 29 29 H 1.09000 * 109.47237 * 183.43849 * 1 2 3 30 30 H 1.09006 * 109.46595 * 303.43367 * 1 2 3 31 31 H 1.08991 * 109.47250 * 63.43043 * 1 2 3 32 32 H 1.09005 * 109.46801 * 239.99952 * 2 1 3 33 33 H 1.09002 * 109.47392 * 120.00804 * 2 1 3 34 34 H 1.09002 * 109.47254 * 52.49068 * 4 3 2 35 35 H 1.09000 * 109.46962 * 172.48727 * 4 3 2 36 36 H 0.97003 * 119.99701 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.50485 * 62.49865 * 15 13 3 38 38 H 1.09005 * 109.53415 * 302.40139 * 15 13 3 39 39 H 1.09003 * 109.46318 * 299.16445 * 16 15 13 40 40 H 1.08991 * 109.45971 * 179.19031 * 16 15 13 41 41 H 1.08998 * 109.46633 * 176.49667 * 18 17 16 42 42 H 1.08992 * 109.47480 * 56.49647 * 18 17 16 43 43 H 1.08000 * 120.00438 * 0.02562 * 20 19 18 44 44 H 1.07998 * 120.00694 * 180.20759 * 21 20 19 45 45 H 1.07995 * 120.00051 * 179.78617 * 22 21 20 46 46 H 1.07999 * 119.99363 * 179.97438 * 23 22 21 47 47 H 1.07997 * 119.99535 * 179.97438 * 24 23 22 48 48 H 1.08995 * 109.46617 * 66.06976 * 27 25 17 49 49 H 1.09001 * 109.47121 * 186.07138 * 27 25 17 50 50 H 1.08999 * 109.46960 * 306.07388 * 27 25 17 51 51 H 1.09000 * 109.50423 * 180.87433 * 28 25 17 52 52 H 1.09002 * 109.50348 * 60.76029 * 28 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6470 2.0751 -1.2420 5 6 2.3933 1.4639 -2.3998 6 1 3.0236 0.6014 -2.2410 7 6 2.2716 2.0057 -3.6617 8 7 1.5037 3.0558 -3.8551 9 14 3.1972 1.2485 -5.0967 10 1 2.7720 -0.1637 -5.2701 11 1 2.8996 2.0113 -6.3355 12 1 4.6564 1.2963 -4.8251 13 6 1.5301 2.1164 1.1761 14 1 0.4434 2.1904 1.1327 15 6 2.1383 3.5215 1.1946 16 6 1.6729 4.2571 2.4532 17 7 2.0930 3.5068 3.6437 18 6 1.7848 4.2521 4.8715 19 6 2.5760 5.5345 4.8927 20 6 3.8806 5.5342 5.3495 21 6 4.6078 6.7098 5.3652 22 6 4.0273 7.8873 4.9322 23 6 2.7209 7.8884 4.4799 24 6 1.9954 6.7120 4.4601 25 6 1.4834 2.1711 3.6718 26 1 0.3978 2.2668 3.6557 27 6 1.9117 1.4420 4.9470 28 6 1.9431 1.3732 2.4495 29 1 -0.3634 -1.0258 0.0616 30 1 -0.3633 0.5663 0.8577 31 1 -0.3633 0.4596 -0.9191 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 0.5744 1.9729 -1.4067 35 1 1.9032 3.1315 -1.1616 36 1 1.4177 3.4368 -4.7430 37 1 1.8128 4.0706 0.3109 38 1 3.2258 3.4479 1.1972 39 1 0.5863 4.3431 2.4428 40 1 2.1158 5.2527 2.4765 41 1 2.0490 3.6477 5.7392 42 1 0.7197 4.4818 4.8995 43 1 4.3331 4.6149 5.6908 44 1 5.6282 6.7090 5.7189 45 1 4.5941 8.8064 4.9477 46 1 2.2674 8.8085 4.1421 47 1 0.9747 6.7131 4.1072 48 1 1.4921 1.9509 5.8147 49 1 1.5488 0.4146 4.9175 50 1 2.9995 1.4413 5.0171 51 1 1.4783 0.3874 2.4625 52 1 3.0275 1.2652 2.4722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256552219.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:21 Heat of formation + Delta-G solvation = 31.294385 kcal Electronic energy + Delta-G solvation = -27461.936026 eV Core-core repulsion = 24039.925089 eV Total energy + Delta-G solvation = -3422.010937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.96572 -38.84557 -36.86193 -33.28970 -32.48237 -32.37347 -30.94809 -30.39125 -29.11200 -27.29789 -26.19122 -25.27846 -23.56280 -22.68798 -22.26792 -21.39927 -20.99043 -19.72485 -18.55695 -16.85375 -16.34573 -15.78808 -15.63563 -15.39166 -14.91435 -14.73978 -14.68776 -14.16406 -13.93656 -13.82817 -13.49983 -13.20583 -12.97979 -12.73301 -12.58937 -12.22672 -12.11440 -11.91916 -11.80489 -11.77472 -11.63588 -11.34982 -11.12491 -11.04520 -10.98266 -10.78252 -10.69604 -10.66969 -10.45912 -10.11537 -9.99773 -9.86183 -9.36232 -9.09715 -8.95771 -8.81351 -8.35578 -8.18275 -7.08568 -5.97357 -3.97289 1.26868 1.35358 3.36442 3.40346 3.43585 3.62147 4.13037 4.46113 4.68785 4.75330 4.83902 4.93391 5.02106 5.05137 5.13809 5.17533 5.30919 5.37867 5.42153 5.44675 5.51244 5.58651 5.64782 5.71698 5.77212 5.79948 5.87358 5.92764 5.94541 5.97878 5.99475 6.04208 6.06362 6.18356 6.24466 6.34952 6.40981 6.44446 6.45257 6.48500 6.57359 6.67092 6.76108 6.89391 6.93298 6.95748 7.22728 7.26870 7.41854 7.48275 7.87310 8.19574 8.32592 8.65154 9.09695 9.65991 11.13439 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.003342 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.513669 B = 8375.999334 C = 9690.552697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.058 3.942 3 N -0.529 5.529 4 C 0.187 3.813 5 C -0.502 4.502 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.895 3.105 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.085 3.915 14 H 0.027 0.973 15 C -0.108 4.108 16 C 0.058 3.942 17 N -0.524 5.524 18 C 0.088 3.912 19 C -0.074 4.074 20 C -0.096 4.096 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.122 4.122 24 C -0.115 4.115 25 C 0.084 3.916 26 H 0.035 0.965 27 C -0.146 4.146 28 C -0.102 4.102 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.054 0.946 34 H -0.009 1.009 35 H 0.037 0.963 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.026 0.974 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.037 0.963 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.051 0.949 49 H 0.059 0.941 50 H 0.065 0.935 51 H 0.063 0.937 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 4.259 20.843 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.070 4.070 3 N -0.252 5.252 4 C 0.062 3.938 5 C -0.541 4.541 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.202 1.202 13 C -0.024 4.024 14 H 0.045 0.955 15 C -0.146 4.146 16 C -0.070 4.070 17 N -0.249 5.249 18 C -0.039 4.039 19 C -0.074 4.074 20 C -0.115 4.115 21 C -0.141 4.141 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.133 4.133 25 C -0.024 4.024 26 H 0.053 0.947 27 C -0.204 4.204 28 C -0.140 4.140 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.009 0.991 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.055 0.945 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.135 0.865 48 H 0.070 0.930 49 H 0.078 0.922 50 H 0.084 0.916 51 H 0.082 0.918 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.173 4.291 20.677 21.150 hybrid contribution -1.398 -0.099 -1.018 1.732 sum -0.225 4.192 19.658 20.102 Atomic orbital electron populations 1.22388 0.99741 1.00585 1.01929 1.22007 0.91787 0.91885 1.01335 1.62387 1.58554 1.01417 1.02849 1.19815 0.94267 0.94821 0.84890 1.21135 1.27227 1.13853 0.91898 0.92116 1.24959 0.95663 0.95124 0.98842 1.69949 1.38976 1.22612 1.22468 0.86605 0.80407 0.79085 0.81568 1.20389 1.21452 1.20208 1.21539 0.95898 0.93750 0.91213 0.95545 1.21660 1.02200 0.94989 0.95727 1.22163 0.97253 0.97598 0.89965 1.62033 1.59421 1.02170 1.01272 1.21122 0.96401 0.92118 0.94296 1.19767 0.94889 0.94312 0.98428 1.20999 0.93608 0.97910 0.98974 1.21149 0.99746 0.92877 1.00295 1.21129 0.95379 0.98136 0.99549 1.21104 0.94779 0.98000 1.00103 1.21084 0.99976 0.92504 0.99765 1.21618 0.95849 0.88858 0.96097 0.94703 1.21918 1.02452 0.99797 0.96220 1.21710 1.02572 0.97456 0.92255 0.93608 0.93675 0.91760 0.90276 0.92759 0.99129 0.94525 0.93014 0.90759 0.90511 0.95573 0.90555 0.89530 0.94512 0.86004 0.86251 0.86386 0.86271 0.86456 0.92993 0.92189 0.91557 0.91806 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.35 9.25 37.15 0.34 -3.01 16 2 C 0.06 1.12 5.42 -3.83 -0.02 1.10 16 3 N -0.53 -11.29 4.56 -227.94 -1.04 -12.33 16 4 C 0.19 4.82 4.40 -4.98 -0.02 4.79 16 5 C -0.50 -14.12 8.54 -34.44 -0.29 -14.41 16 6 H 0.06 1.70 7.07 -52.49 -0.37 1.32 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.80 13.29 55.43 0.74 -26.06 16 9 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.09 1.53 1.47 -67.59 -0.10 1.43 16 14 H 0.03 0.51 6.43 -51.93 -0.33 0.17 16 15 C -0.11 -1.92 5.10 -26.66 -0.14 -2.06 16 16 C 0.06 0.85 5.19 -3.84 -0.02 0.83 16 17 N -0.52 -6.85 4.50 -228.13 -1.03 -7.88 16 18 C 0.09 0.96 4.78 -4.98 -0.02 0.94 16 19 C -0.07 -0.83 4.60 -104.63 -0.48 -1.31 16 20 C -0.10 -1.04 9.73 -39.58 -0.39 -1.43 16 21 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 23 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 24 C -0.11 -1.25 8.27 -39.59 -0.33 -1.58 16 25 C 0.08 1.07 2.44 -67.71 -0.17 0.90 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 C -0.15 -1.49 8.56 37.16 0.32 -1.17 16 28 C -0.10 -1.52 4.22 -26.65 -0.11 -1.63 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.04 0.76 6.29 -51.93 -0.33 0.43 16 31 H 0.06 1.32 6.53 -51.93 -0.34 0.98 16 32 H 0.08 1.67 6.76 -51.93 -0.35 1.32 16 33 H 0.05 0.92 6.36 -51.93 -0.33 0.59 16 34 H -0.01 -0.25 6.18 -51.93 -0.32 -0.57 16 35 H 0.04 1.01 5.83 -51.93 -0.30 0.71 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.07 1.48 6.31 -51.93 -0.33 1.15 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 1.11 6.06 -51.93 -0.31 0.80 16 41 H 0.09 0.85 5.89 -51.93 -0.31 0.54 16 42 H 0.04 0.40 8.04 -51.93 -0.42 -0.02 16 43 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 46 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 48 H 0.05 0.46 6.53 -51.93 -0.34 0.12 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.06 0.91 6.53 -51.93 -0.34 0.57 16 52 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -29.72 387.18 -12.16 -41.88 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -8.93 Total: 1.73 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: -2.72 Total: -20.01 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: -1.33 Total: -46.27 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.72 -12.16 -41.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256552219.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.179 kcal (2) G-P(sol) polarization free energy of solvation -29.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds