Wall clock time and date at job start Tue Mar 31 2020 11:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46902 * 109.47696 * 2 1 4 4 C 1.46897 * 110.99840 * 295.08879 * 3 2 1 5 5 C 1.50695 * 109.47366 * 292.49210 * 4 3 2 6 6 H 1.08001 * 119.99644 * 4.22806 * 5 4 3 7 7 C 1.37872 * 120.00566 * 184.23179 * 5 4 3 8 8 N 1.31518 * 119.99473 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00508 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46860 * 59.99967 * 9 7 5 11 11 H 1.48498 * 109.47182 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47274 * 299.99962 * 9 7 5 13 13 C 1.46905 * 110.99561 * 59.04017 * 3 2 1 14 14 H 1.09000 * 109.52200 * 296.17774 * 13 3 2 15 15 C 1.53117 * 109.52182 * 176.04887 * 13 3 2 16 16 C 1.53029 * 109.28156 * 182.44173 * 15 13 3 17 17 N 1.46849 * 109.52432 * 59.17890 * 16 15 13 18 18 C 1.46900 * 111.00021 * 174.16652 * 17 16 15 19 19 C 1.50696 * 109.46956 * 296.49232 * 18 17 16 20 20 C 1.38233 * 120.00038 * 276.22752 * 19 18 17 21 21 C 1.38239 * 120.00172 * 179.80627 * 20 19 18 22 22 C 1.38240 * 119.99582 * 0.42332 * 21 20 19 23 23 C 1.38240 * 119.99868 * 359.81076 * 22 21 20 24 24 C 1.38231 * 120.00064 * 359.97438 * 23 22 21 25 25 C 1.46852 * 111.19376 * 298.25835 * 17 16 15 26 26 H 1.08994 * 109.46668 * 301.72247 * 25 17 16 27 27 C 1.53009 * 109.46120 * 181.75618 * 25 17 16 28 28 C 1.53040 * 109.52427 * 61.74350 * 25 17 16 29 29 H 1.09000 * 109.47237 * 183.43849 * 1 2 3 30 30 H 1.09006 * 109.46595 * 303.43367 * 1 2 3 31 31 H 1.08991 * 109.47250 * 63.43043 * 1 2 3 32 32 H 1.09005 * 109.46801 * 239.99952 * 2 1 3 33 33 H 1.09002 * 109.47392 * 120.00804 * 2 1 3 34 34 H 1.09002 * 109.47254 * 52.49068 * 4 3 2 35 35 H 1.09000 * 109.46962 * 172.48727 * 4 3 2 36 36 H 0.97003 * 119.99701 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.50485 * 62.49865 * 15 13 3 38 38 H 1.09005 * 109.53415 * 302.40139 * 15 13 3 39 39 H 1.09003 * 109.46318 * 299.16445 * 16 15 13 40 40 H 1.08991 * 109.45971 * 179.19031 * 16 15 13 41 41 H 1.08998 * 109.46633 * 176.49667 * 18 17 16 42 42 H 1.08992 * 109.47480 * 56.49647 * 18 17 16 43 43 H 1.08000 * 120.00438 * 0.02562 * 20 19 18 44 44 H 1.07998 * 120.00694 * 180.20759 * 21 20 19 45 45 H 1.07995 * 120.00051 * 179.78617 * 22 21 20 46 46 H 1.07999 * 119.99363 * 179.97438 * 23 22 21 47 47 H 1.07997 * 119.99535 * 179.97438 * 24 23 22 48 48 H 1.08995 * 109.46617 * 66.06976 * 27 25 17 49 49 H 1.09001 * 109.47121 * 186.07138 * 27 25 17 50 50 H 1.08999 * 109.46960 * 306.07388 * 27 25 17 51 51 H 1.09000 * 109.50423 * 180.87433 * 28 25 17 52 52 H 1.09002 * 109.50348 * 60.76029 * 28 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6470 2.0751 -1.2420 5 6 2.3933 1.4639 -2.3998 6 1 3.0236 0.6014 -2.2410 7 6 2.2716 2.0057 -3.6617 8 7 1.5037 3.0558 -3.8551 9 14 3.1972 1.2485 -5.0967 10 1 2.7720 -0.1637 -5.2701 11 1 2.8996 2.0113 -6.3355 12 1 4.6564 1.2963 -4.8251 13 6 1.5301 2.1164 1.1761 14 1 0.4434 2.1904 1.1327 15 6 2.1383 3.5215 1.1946 16 6 1.6729 4.2571 2.4532 17 7 2.0930 3.5068 3.6437 18 6 1.7848 4.2521 4.8715 19 6 2.5760 5.5345 4.8927 20 6 3.8806 5.5342 5.3495 21 6 4.6078 6.7098 5.3652 22 6 4.0273 7.8873 4.9322 23 6 2.7209 7.8884 4.4799 24 6 1.9954 6.7120 4.4601 25 6 1.4834 2.1711 3.6718 26 1 0.3978 2.2668 3.6557 27 6 1.9117 1.4420 4.9470 28 6 1.9431 1.3732 2.4495 29 1 -0.3634 -1.0258 0.0616 30 1 -0.3633 0.5663 0.8577 31 1 -0.3633 0.4596 -0.9191 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 0.5744 1.9729 -1.4067 35 1 1.9032 3.1315 -1.1616 36 1 1.4177 3.4368 -4.7430 37 1 1.8128 4.0706 0.3109 38 1 3.2258 3.4479 1.1972 39 1 0.5863 4.3431 2.4428 40 1 2.1158 5.2527 2.4765 41 1 2.0490 3.6477 5.7392 42 1 0.7197 4.4818 4.8995 43 1 4.3331 4.6149 5.6908 44 1 5.6282 6.7090 5.7189 45 1 4.5941 8.8064 4.9477 46 1 2.2674 8.8085 4.1421 47 1 0.9747 6.7131 4.1072 48 1 1.4921 1.9509 5.8147 49 1 1.5488 0.4146 4.9175 50 1 2.9995 1.4413 5.0171 51 1 1.4783 0.3874 2.4625 52 1 3.0275 1.2652 2.4722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256552219.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:20 Heat of formation + Delta-G solvation = 14.580273 kcal Electronic energy + Delta-G solvation = -27462.660804 eV Core-core repulsion = 24039.925089 eV Total energy + Delta-G solvation = -3422.735715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.05541 -39.89560 -38.24509 -34.92662 -34.01454 -33.62260 -31.72990 -31.44978 -30.84574 -28.66685 -27.62405 -26.51360 -25.08166 -23.96721 -23.40074 -22.70455 -21.95010 -20.89042 -20.10968 -18.41304 -17.64493 -17.10953 -16.77764 -16.57153 -16.46949 -16.02329 -15.74938 -15.68847 -15.15935 -15.04225 -14.73377 -14.42726 -14.21116 -13.80595 -13.73292 -13.51811 -13.43791 -13.26763 -13.16978 -13.08005 -12.81564 -12.72119 -12.68092 -12.54714 -12.42110 -12.08341 -11.99319 -11.87073 -11.83382 -11.67651 -11.53751 -11.39295 -11.08047 -10.89308 -10.54130 -9.74941 -9.63001 -9.21404 -8.86168 -8.17129 -6.25704 0.47418 0.56838 1.39920 1.43243 1.50785 2.41301 2.74870 3.14120 3.18193 3.31432 3.78434 3.92282 3.93665 3.98626 4.10190 4.20742 4.21595 4.29408 4.31997 4.38076 4.43719 4.45532 4.50402 4.59324 4.60602 4.64210 4.67509 4.72497 4.82182 4.85363 4.91453 4.96225 5.00543 5.04487 5.09842 5.14879 5.17700 5.22493 5.24578 5.30694 5.35973 5.42580 5.45387 5.54815 5.61908 5.67930 5.70989 5.75813 6.12767 6.14895 6.15617 6.24855 6.47693 6.75633 6.90632 7.42898 8.93381 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014113 B = 0.003342 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.513669 B = 8375.999334 C = 9690.552697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.057 3.943 3 N -0.539 5.539 4 C 0.205 3.795 5 C -0.519 4.519 6 H 0.059 0.941 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.270 1.270 13 C 0.087 3.913 14 H 0.018 0.982 15 C -0.102 4.102 16 C 0.072 3.928 17 N -0.529 5.529 18 C 0.092 3.908 19 C -0.088 4.088 20 C -0.108 4.108 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.132 4.132 24 C -0.129 4.129 25 C 0.086 3.914 26 H 0.035 0.965 27 C -0.139 4.139 28 C -0.091 4.091 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.087 0.913 34 H -0.036 1.036 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.041 0.959 38 H 0.058 0.942 39 H 0.027 0.973 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.041 0.959 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.134 0.866 47 H 0.120 0.880 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.064 0.936 51 H 0.077 0.923 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.845 3.226 22.771 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.071 4.071 3 N -0.262 5.262 4 C 0.079 3.921 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.576 5.576 9 Si 0.789 3.211 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.195 1.195 13 C -0.022 4.022 14 H 0.036 0.964 15 C -0.140 4.140 16 C -0.056 4.056 17 N -0.255 5.255 18 C -0.034 4.034 19 C -0.088 4.088 20 C -0.126 4.126 21 C -0.148 4.148 22 C -0.148 4.148 23 C -0.150 4.150 24 C -0.147 4.147 25 C -0.023 4.023 26 H 0.053 0.947 27 C -0.196 4.196 28 C -0.129 4.129 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.105 0.895 34 H -0.018 1.018 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.059 0.941 43 H 0.148 0.852 44 H 0.156 0.844 45 H 0.156 0.844 46 H 0.152 0.848 47 H 0.138 0.862 48 H 0.088 0.912 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.095 0.905 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.800 3.244 22.633 22.935 hybrid contribution -1.585 0.268 -1.581 2.255 sum 0.215 3.512 21.053 21.345 Atomic orbital electron populations 1.22261 0.98578 1.02221 1.00468 1.22055 0.92762 0.90462 1.01784 1.62309 1.59187 1.02515 1.02176 1.19406 0.92256 0.93635 0.86775 1.21463 1.27323 1.13911 0.93032 0.92260 1.25857 0.96481 0.95505 1.01760 1.70085 1.40355 1.23956 1.23186 0.85510 0.79097 0.78550 0.77906 1.19271 1.20917 1.19505 1.21617 0.95214 0.93915 0.91436 0.96446 1.21535 1.00900 0.95254 0.96324 1.21916 0.97048 0.97261 0.89399 1.61995 1.59616 1.02478 1.01369 1.21157 0.96663 0.92104 0.93505 1.19878 0.95341 0.94483 0.99112 1.21204 0.93623 0.98662 0.99135 1.21453 1.00675 0.92716 0.99974 1.21449 0.95425 0.99035 0.98929 1.21381 0.95177 0.98449 1.00029 1.21249 1.00385 0.92943 1.00147 1.21634 0.95799 0.88536 0.96298 0.94665 1.21866 1.02442 1.00265 0.95071 1.21632 1.01980 0.97999 0.91328 0.90639 0.92599 0.95384 0.92498 0.89494 1.01810 0.97315 0.92893 0.94060 0.92271 0.95515 0.90581 0.87759 0.94101 0.85174 0.84376 0.84404 0.84831 0.86203 0.91242 0.90978 0.91716 0.90498 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.23 9.25 71.98 0.67 -5.57 16 2 C 0.06 2.19 5.42 86.30 0.47 2.66 16 3 N -0.54 -23.64 4.56 -875.07 -3.99 -27.63 16 4 C 0.21 11.15 4.40 85.56 0.38 11.53 16 5 C -0.52 -30.09 8.54 25.60 0.22 -29.87 16 6 H 0.06 3.38 7.07 -2.91 -0.02 3.36 16 7 C 0.00 0.09 5.46 84.65 0.46 0.55 16 8 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 9 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.09 3.18 1.47 44.99 0.07 3.25 16 14 H 0.02 0.68 6.43 -2.39 -0.02 0.67 16 15 C -0.10 -3.82 5.10 30.64 0.16 -3.66 16 16 C 0.07 2.14 5.19 86.32 0.45 2.59 16 17 N -0.53 -13.18 4.50 -875.66 -3.94 -17.12 16 18 C 0.09 1.85 4.78 85.56 0.41 2.26 16 19 C -0.09 -1.87 4.60 -19.87 -0.09 -1.97 16 20 C -0.11 -2.18 9.73 22.27 0.22 -1.96 16 21 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 22 C -0.13 -2.37 10.05 22.27 0.22 -2.15 16 23 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 24 C -0.13 -2.73 8.27 22.27 0.18 -2.54 16 25 C 0.09 2.00 2.44 44.94 0.11 2.11 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 C -0.14 -2.36 8.56 71.99 0.62 -1.74 16 28 C -0.09 -2.60 4.22 30.65 0.13 -2.47 16 29 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 1.83 6.29 -2.38 -0.01 1.82 16 31 H 0.03 1.17 6.53 -2.39 -0.02 1.16 16 32 H 0.06 2.42 6.76 -2.38 -0.02 2.40 16 33 H 0.09 2.76 6.36 -2.39 -0.02 2.74 16 34 H -0.04 -2.09 6.18 -2.39 -0.01 -2.10 16 35 H 0.01 0.52 5.83 -2.39 -0.01 0.51 16 36 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.04 1.78 6.31 -2.39 -0.02 1.77 16 38 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 2.26 6.06 -2.39 -0.01 2.24 16 41 H 0.10 1.73 5.89 -2.39 -0.01 1.71 16 42 H 0.04 0.80 8.04 -2.39 -0.02 0.78 16 43 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 44 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 46 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 47 H 0.12 2.37 8.06 -2.91 -0.02 2.35 16 48 H 0.07 0.96 6.53 -2.39 -0.02 0.94 16 49 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 51 H 0.08 1.99 6.53 -2.39 -0.02 1.97 16 52 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -66.44 387.18 0.36 -66.08 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: 0.88 Total: 19.98 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 5.11 Total: -31.53 kcal Atomic # 7 Polarization: -94.27 SS G_CDS: -7.65 Total: -101.92 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -66.44 0.36 -66.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256552219.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.663 kcal (2) G-P(sol) polarization free energy of solvation -66.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds