Wall clock time and date at job start Tue Mar 31 2020 11:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47646 * 2 1 4 4 C 1.46907 * 110.99904 * 292.70866 * 3 2 1 5 5 C 1.50699 * 109.46762 * 297.09336 * 4 3 2 6 6 H 1.07996 * 120.00413 * 4.64677 * 5 4 3 7 7 C 1.37882 * 119.99461 * 184.65373 * 5 4 3 8 8 N 1.31520 * 119.99555 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00261 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46727 * 90.00205 * 9 7 5 11 11 H 1.48490 * 109.47074 * 210.00093 * 9 7 5 12 12 H 1.48498 * 109.46981 * 330.00381 * 9 7 5 13 13 C 1.46893 * 111.00296 * 168.75310 * 3 2 1 14 14 H 1.09005 * 109.57816 * 64.11215 * 13 3 2 15 15 C 1.53120 * 109.52373 * 184.27159 * 13 3 2 16 16 C 1.53042 * 109.27811 * 177.55663 * 15 13 3 17 17 N 1.46846 * 109.52259 * 300.82333 * 16 15 13 18 18 C 1.46900 * 110.99555 * 185.84004 * 17 16 15 19 19 C 1.50699 * 109.47555 * 45.78556 * 18 17 16 20 20 C 1.38232 * 120.00606 * 269.73061 * 19 18 17 21 21 C 1.38228 * 120.00371 * 179.76305 * 20 19 18 22 22 C 1.38238 * 120.00043 * 0.50415 * 21 20 19 23 23 C 1.38235 * 119.99844 * 359.75147 * 22 21 20 24 24 C 1.38234 * 120.00107 * 359.97438 * 23 22 21 25 25 C 1.46838 * 111.20085 * 61.74407 * 17 16 15 26 26 H 1.09003 * 109.46481 * 58.26789 * 25 17 16 27 27 C 1.53001 * 109.46287 * 178.25049 * 25 17 16 28 28 C 1.53045 * 109.52403 * 298.25384 * 25 17 16 29 29 H 1.08994 * 109.47434 * 178.51785 * 1 2 3 30 30 H 1.09006 * 109.46310 * 298.51401 * 1 2 3 31 31 H 1.08996 * 109.47030 * 58.50943 * 1 2 3 32 32 H 1.09009 * 109.46688 * 239.99886 * 2 1 3 33 33 H 1.08996 * 109.47632 * 120.00437 * 2 1 3 34 34 H 1.08994 * 109.47132 * 57.09225 * 4 3 2 35 35 H 1.09001 * 109.46632 * 177.09300 * 4 3 2 36 36 H 0.96995 * 119.99743 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.50333 * 297.49997 * 15 13 3 38 38 H 1.09001 * 109.49982 * 57.61913 * 15 13 3 39 39 H 1.09001 * 109.45927 * 180.80214 * 16 15 13 40 40 H 1.09005 * 109.46161 * 60.83681 * 16 15 13 41 41 H 1.08997 * 109.47016 * 165.78901 * 18 17 16 42 42 H 1.09005 * 109.47066 * 285.78768 * 18 17 16 43 43 H 1.08008 * 119.99607 * 359.97438 * 20 19 18 44 44 H 1.07999 * 120.00172 * 180.22824 * 21 20 19 45 45 H 1.07999 * 120.00422 * 179.71849 * 22 21 20 46 46 H 1.07995 * 120.00141 * 179.97438 * 23 22 21 47 47 H 1.08005 * 120.00575 * 179.97438 * 24 23 22 48 48 H 1.09002 * 109.47005 * 59.99966 * 27 25 17 49 49 H 1.09000 * 109.46837 * 179.97438 * 27 25 17 50 50 H 1.08997 * 109.47051 * 299.99724 * 27 25 17 51 51 H 1.08999 * 109.50529 * 179.11873 * 28 25 17 52 52 H 1.08993 * 109.50207 * 299.24521 * 28 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6961 2.0578 -1.2652 5 6 2.3998 1.3591 -2.4000 6 1 2.9638 0.4574 -2.2122 7 6 2.3235 1.8711 -3.6779 8 7 2.9372 1.2610 -4.6684 9 14 1.3476 3.4304 -4.0027 10 1 2.2354 4.6109 -3.8498 11 1 0.8041 3.3954 -5.3842 12 1 0.2274 3.5244 -3.0323 13 6 3.4634 1.4328 0.2675 14 1 4.0013 0.9375 -0.5409 15 6 3.9175 2.8919 0.3655 16 6 5.4093 2.9350 0.7044 17 7 5.6431 2.2442 1.9789 18 6 7.0419 2.3850 2.4051 19 6 7.4737 3.8199 2.2454 20 6 8.0405 4.2432 1.0578 21 6 8.4321 5.5605 0.9096 22 6 8.2665 6.4524 1.9527 23 6 7.7045 6.0280 3.1422 24 6 7.3077 4.7119 3.2885 25 6 5.2586 0.8295 1.8945 26 1 5.8256 0.3459 1.0990 27 6 5.5587 0.1393 3.2266 28 6 3.7623 0.7234 1.5911 29 1 -0.3634 -1.0272 -0.0266 30 1 -0.3632 0.4906 0.9031 31 1 -0.3633 0.5368 -0.8763 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.6192 2.0239 -1.4296 35 1 2.0241 3.0962 -1.2186 36 1 2.8833 1.6210 -5.5674 37 1 3.7464 3.3911 -0.5883 38 1 3.3517 3.3973 1.1481 39 1 5.7326 3.9726 0.7890 40 1 5.9756 2.4415 -0.0854 41 1 7.1343 2.0920 3.4509 42 1 7.6750 1.7446 1.7910 43 1 8.1743 3.5452 0.2444 44 1 8.8716 5.8920 -0.0196 45 1 8.5766 7.4806 1.8386 46 1 7.5755 6.7246 3.9573 47 1 6.8690 4.3801 4.2180 48 1 4.9920 0.6230 4.0222 49 1 5.2729 -0.9107 3.1641 50 1 6.6244 0.2139 3.4425 51 1 3.4804 -0.3266 1.5130 52 1 3.1942 1.1948 2.3930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256552220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:23 Heat of formation + Delta-G solvation = 33.055073 kcal Electronic energy + Delta-G solvation = -27797.043328 eV Core-core repulsion = 24375.108740 eV Total energy + Delta-G solvation = -3421.934588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.99321 -38.73400 -36.79090 -33.28713 -32.37599 -32.35568 -30.95081 -30.43965 -29.39833 -27.55336 -26.18527 -25.30121 -23.25994 -22.63403 -22.34690 -20.97570 -20.82491 -19.53729 -18.87592 -16.80938 -16.73072 -15.98298 -15.59066 -15.30162 -14.87642 -14.67498 -14.49781 -14.21274 -13.78961 -13.60923 -13.55797 -13.35417 -12.87254 -12.62816 -12.59613 -12.43771 -12.07508 -11.99228 -11.85514 -11.74345 -11.48224 -11.32010 -11.13236 -11.04357 -10.91937 -10.69468 -10.63342 -10.49111 -10.42183 -10.14111 -9.94090 -9.70069 -9.61062 -9.31092 -8.93384 -8.79885 -8.56581 -8.06363 -7.10280 -6.09589 -4.07861 1.27763 1.36857 3.27321 3.35443 3.39860 3.65504 4.20175 4.40381 4.69518 4.77505 4.83421 4.95294 5.06010 5.12680 5.19953 5.24965 5.27490 5.37221 5.45226 5.54440 5.59216 5.63691 5.74471 5.78570 5.84660 5.89109 5.94585 5.98573 6.02276 6.05862 6.11775 6.13019 6.23465 6.31163 6.35049 6.39097 6.45700 6.46634 6.52510 6.58396 6.59987 6.80401 6.82657 6.89052 6.94680 7.00953 7.04192 7.18911 7.31575 7.35920 7.62055 8.13600 8.22159 8.47332 8.93388 9.54304 11.03534 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.004184 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.270215 B = 6691.013753 C = 8204.729740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.050 3.950 3 N -0.529 5.529 4 C 0.150 3.850 5 C -0.543 4.543 6 H 0.073 0.927 7 C 0.072 3.928 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.264 1.264 13 C 0.092 3.908 14 H 0.049 0.951 15 C -0.102 4.102 16 C 0.056 3.944 17 N -0.524 5.524 18 C 0.091 3.909 19 C -0.077 4.077 20 C -0.112 4.112 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.101 4.101 25 C 0.083 3.917 26 H 0.038 0.962 27 C -0.145 4.145 28 C -0.104 4.104 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.029 0.971 35 H 0.026 0.974 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.122 0.878 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.051 0.949 51 H 0.063 0.937 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.061 4.172 16.210 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.079 4.079 3 N -0.253 5.253 4 C 0.023 3.977 5 C -0.582 4.582 6 H 0.091 0.909 7 C -0.130 4.130 8 N -0.539 5.539 9 Si 0.702 3.298 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.188 1.188 13 C -0.017 4.017 14 H 0.067 0.933 15 C -0.140 4.140 16 C -0.072 4.072 17 N -0.249 5.249 18 C -0.036 4.036 19 C -0.078 4.078 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.119 4.119 25 C -0.025 4.025 26 H 0.056 0.944 27 C -0.202 4.202 28 C -0.142 4.142 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.101 0.899 42 H 0.057 0.943 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.140 0.860 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.070 0.930 51 H 0.081 0.919 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.530 4.628 16.746 19.355 hybrid contribution 0.487 0.030 -1.867 1.930 sum 9.017 4.658 14.878 18.010 Atomic orbital electron populations 1.21707 0.96228 1.00105 1.01819 1.21975 0.95104 0.90826 0.99959 1.62503 1.12699 1.15018 1.35044 1.20227 0.96597 0.94628 0.86230 1.21650 1.32421 1.12043 0.92106 0.90936 1.24942 0.94939 0.96928 0.96161 1.69930 1.43454 1.40115 1.00441 0.86860 0.81239 0.84086 0.77651 1.20218 1.21384 1.18823 1.21419 0.89794 0.95411 0.95033 0.93309 1.21560 0.93547 0.97114 1.01821 1.22218 0.97478 0.98777 0.88715 1.62156 1.18661 1.12937 1.31168 1.21116 0.89295 0.91913 1.01273 1.19806 0.98120 0.95837 0.93995 1.21140 0.98636 0.96259 0.97037 1.21121 1.00340 0.93549 0.98886 1.21129 0.99929 0.99449 0.93693 1.21129 0.99324 0.95983 0.97693 1.21014 0.98977 0.93118 0.98804 1.21639 0.96933 0.87317 0.96617 0.94371 1.21889 1.01110 0.99981 0.97264 1.21768 0.93632 1.00165 0.98654 0.93675 0.93227 0.92267 0.93678 0.92550 0.95309 0.95569 0.92796 0.90827 0.91429 0.90476 0.95112 0.89888 0.94293 0.86269 0.86181 0.86379 0.86275 0.85982 0.91795 0.92336 0.92957 0.91857 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.90 37.16 0.37 -2.10 16 2 C 0.05 0.95 5.27 -3.82 -0.02 0.93 16 3 N -0.53 -10.91 4.57 -227.93 -1.04 -11.95 16 4 C 0.15 3.57 3.66 -4.97 -0.02 3.55 16 5 C -0.54 -14.89 8.04 -34.44 -0.28 -15.16 16 6 H 0.07 2.18 6.12 -52.49 -0.32 1.86 16 7 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 8 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 9 Si 0.87 21.46 27.38 -169.99 -4.65 16.81 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 12 H -0.26 -6.26 6.68 56.52 0.38 -5.88 16 13 C 0.09 1.76 1.72 -67.59 -0.12 1.65 16 14 H 0.05 1.10 6.63 -51.93 -0.34 0.76 16 15 C -0.10 -1.87 5.07 -26.65 -0.14 -2.01 16 16 C 0.06 0.89 4.58 -3.83 -0.02 0.87 16 17 N -0.52 -7.27 4.64 -228.12 -1.06 -8.33 16 18 C 0.09 1.08 4.52 -4.98 -0.02 1.05 16 19 C -0.08 -0.92 4.11 -104.62 -0.43 -1.35 16 20 C -0.11 -1.34 7.81 -39.59 -0.31 -1.64 16 21 C -0.12 -1.33 10.05 -39.58 -0.40 -1.72 16 22 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 23 C -0.12 -1.26 10.05 -39.58 -0.40 -1.65 16 24 C -0.10 -1.11 9.70 -39.58 -0.38 -1.49 16 25 C 0.08 1.15 2.40 -67.72 -0.16 0.99 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 C -0.14 -1.59 8.78 37.16 0.33 -1.27 16 28 C -0.10 -1.63 4.25 -26.64 -0.11 -1.74 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 1.14 6.47 -51.93 -0.34 0.81 16 32 H 0.04 1.00 6.38 -51.92 -0.33 0.67 16 33 H 0.06 0.96 5.70 -51.93 -0.30 0.66 16 34 H 0.03 0.71 5.74 -51.93 -0.30 0.41 16 35 H 0.03 0.63 5.49 -51.93 -0.28 0.35 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.07 1.51 6.53 -51.93 -0.34 1.17 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.08 1.20 5.65 -51.93 -0.29 0.91 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.87 6.79 -51.93 -0.35 0.52 16 42 H 0.04 0.46 8.02 -51.93 -0.42 0.05 16 43 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 44 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 48 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.05 0.51 6.55 -51.93 -0.34 0.17 16 51 H 0.06 0.96 6.26 -51.93 -0.33 0.64 16 52 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -29.55 382.94 -11.75 -41.29 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.93 Total: 3.71 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.60 Total: -20.79 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -1.33 Total: -46.79 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.65 Total: 16.81 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.55 -11.75 -41.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256552220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.348 kcal (2) G-P(sol) polarization free energy of solvation -29.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds