Wall clock time and date at job start Tue Mar 31 2020 11:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47646 * 2 1 4 4 C 1.46907 * 110.99904 * 292.70866 * 3 2 1 5 5 C 1.50699 * 109.46762 * 297.09336 * 4 3 2 6 6 H 1.07996 * 120.00413 * 4.64677 * 5 4 3 7 7 C 1.37882 * 119.99461 * 184.65373 * 5 4 3 8 8 N 1.31520 * 119.99555 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 120.00261 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46727 * 90.00205 * 9 7 5 11 11 H 1.48490 * 109.47074 * 210.00093 * 9 7 5 12 12 H 1.48498 * 109.46981 * 330.00381 * 9 7 5 13 13 C 1.46893 * 111.00296 * 168.75310 * 3 2 1 14 14 H 1.09005 * 109.57816 * 64.11215 * 13 3 2 15 15 C 1.53120 * 109.52373 * 184.27159 * 13 3 2 16 16 C 1.53042 * 109.27811 * 177.55663 * 15 13 3 17 17 N 1.46846 * 109.52259 * 300.82333 * 16 15 13 18 18 C 1.46900 * 110.99555 * 185.84004 * 17 16 15 19 19 C 1.50699 * 109.47555 * 45.78556 * 18 17 16 20 20 C 1.38232 * 120.00606 * 269.73061 * 19 18 17 21 21 C 1.38228 * 120.00371 * 179.76305 * 20 19 18 22 22 C 1.38238 * 120.00043 * 0.50415 * 21 20 19 23 23 C 1.38235 * 119.99844 * 359.75147 * 22 21 20 24 24 C 1.38234 * 120.00107 * 359.97438 * 23 22 21 25 25 C 1.46838 * 111.20085 * 61.74407 * 17 16 15 26 26 H 1.09003 * 109.46481 * 58.26789 * 25 17 16 27 27 C 1.53001 * 109.46287 * 178.25049 * 25 17 16 28 28 C 1.53045 * 109.52403 * 298.25384 * 25 17 16 29 29 H 1.08994 * 109.47434 * 178.51785 * 1 2 3 30 30 H 1.09006 * 109.46310 * 298.51401 * 1 2 3 31 31 H 1.08996 * 109.47030 * 58.50943 * 1 2 3 32 32 H 1.09009 * 109.46688 * 239.99886 * 2 1 3 33 33 H 1.08996 * 109.47632 * 120.00437 * 2 1 3 34 34 H 1.08994 * 109.47132 * 57.09225 * 4 3 2 35 35 H 1.09001 * 109.46632 * 177.09300 * 4 3 2 36 36 H 0.96995 * 119.99743 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.50333 * 297.49997 * 15 13 3 38 38 H 1.09001 * 109.49982 * 57.61913 * 15 13 3 39 39 H 1.09001 * 109.45927 * 180.80214 * 16 15 13 40 40 H 1.09005 * 109.46161 * 60.83681 * 16 15 13 41 41 H 1.08997 * 109.47016 * 165.78901 * 18 17 16 42 42 H 1.09005 * 109.47066 * 285.78768 * 18 17 16 43 43 H 1.08008 * 119.99607 * 359.97438 * 20 19 18 44 44 H 1.07999 * 120.00172 * 180.22824 * 21 20 19 45 45 H 1.07999 * 120.00422 * 179.71849 * 22 21 20 46 46 H 1.07995 * 120.00141 * 179.97438 * 23 22 21 47 47 H 1.08005 * 120.00575 * 179.97438 * 24 23 22 48 48 H 1.09002 * 109.47005 * 59.99966 * 27 25 17 49 49 H 1.09000 * 109.46837 * 179.97438 * 27 25 17 50 50 H 1.08997 * 109.47051 * 299.99724 * 27 25 17 51 51 H 1.08999 * 109.50529 * 179.11873 * 28 25 17 52 52 H 1.08993 * 109.50207 * 299.24521 * 28 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.6961 2.0578 -1.2652 5 6 2.3998 1.3591 -2.4000 6 1 2.9638 0.4574 -2.2122 7 6 2.3235 1.8711 -3.6779 8 7 2.9372 1.2610 -4.6684 9 14 1.3476 3.4304 -4.0027 10 1 2.2354 4.6109 -3.8498 11 1 0.8041 3.3954 -5.3842 12 1 0.2274 3.5244 -3.0323 13 6 3.4634 1.4328 0.2675 14 1 4.0013 0.9375 -0.5409 15 6 3.9175 2.8919 0.3655 16 6 5.4093 2.9350 0.7044 17 7 5.6431 2.2442 1.9789 18 6 7.0419 2.3850 2.4051 19 6 7.4737 3.8199 2.2454 20 6 8.0405 4.2432 1.0578 21 6 8.4321 5.5605 0.9096 22 6 8.2665 6.4524 1.9527 23 6 7.7045 6.0280 3.1422 24 6 7.3077 4.7119 3.2885 25 6 5.2586 0.8295 1.8945 26 1 5.8256 0.3459 1.0990 27 6 5.5587 0.1393 3.2266 28 6 3.7623 0.7234 1.5911 29 1 -0.3634 -1.0272 -0.0266 30 1 -0.3632 0.4906 0.9031 31 1 -0.3633 0.5368 -0.8763 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.6192 2.0239 -1.4296 35 1 2.0241 3.0962 -1.2186 36 1 2.8833 1.6210 -5.5674 37 1 3.7464 3.3911 -0.5883 38 1 3.3517 3.3973 1.1481 39 1 5.7326 3.9726 0.7890 40 1 5.9756 2.4415 -0.0854 41 1 7.1343 2.0920 3.4509 42 1 7.6750 1.7446 1.7910 43 1 8.1743 3.5452 0.2444 44 1 8.8716 5.8920 -0.0196 45 1 8.5766 7.4806 1.8386 46 1 7.5755 6.7246 3.9573 47 1 6.8690 4.3801 4.2180 48 1 4.9920 0.6230 4.0222 49 1 5.2729 -0.9107 3.1641 50 1 6.6244 0.2139 3.4425 51 1 3.4804 -0.3266 1.5130 52 1 3.1942 1.1948 2.3930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256552220.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:22 Heat of formation + Delta-G solvation = 15.532726 kcal Electronic energy + Delta-G solvation = -27797.803154 eV Core-core repulsion = 24375.108740 eV Total energy + Delta-G solvation = -3422.694414 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11390 -39.88107 -38.22482 -34.80788 -34.15773 -33.64065 -31.80967 -31.54208 -31.09688 -28.97817 -27.61962 -26.50336 -24.77932 -24.01277 -23.37773 -22.24346 -21.94355 -20.86012 -20.60912 -18.80080 -17.63570 -17.30940 -16.69592 -16.46036 -16.36094 -16.14198 -15.96204 -15.55392 -15.15044 -14.88318 -14.85017 -14.56489 -14.27284 -14.13577 -13.60780 -13.55450 -13.50615 -13.31971 -13.09630 -13.03220 -12.88965 -12.75817 -12.57611 -12.33846 -12.20924 -12.14527 -11.97049 -11.89249 -11.81329 -11.72331 -11.66935 -11.51412 -11.19355 -10.89073 -10.76987 -9.76976 -9.68999 -9.21257 -8.93262 -8.32438 -6.35161 0.43518 0.53839 1.31305 1.32729 1.44697 2.31377 2.73352 3.03417 3.15283 3.24241 3.74191 3.92339 3.95183 3.96542 4.09812 4.18357 4.25344 4.29134 4.32721 4.42049 4.43624 4.54675 4.59109 4.62105 4.65842 4.68222 4.69613 4.74905 4.81863 4.88644 4.90332 4.98154 5.02090 5.06029 5.10801 5.13847 5.16301 5.19650 5.22292 5.25533 5.31382 5.34196 5.42914 5.49192 5.59582 5.60160 5.65462 5.73323 6.10283 6.11711 6.13567 6.21317 6.39469 6.51918 6.70958 7.30783 8.84143 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012003 B = 0.004184 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.270215 B = 6691.013753 C = 8204.729740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.049 3.951 3 N -0.523 5.523 4 C 0.160 3.840 5 C -0.536 4.536 6 H 0.030 0.970 7 C 0.013 3.987 8 N -0.949 5.949 9 Si 0.940 3.060 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.246 1.246 13 C 0.094 3.906 14 H 0.003 0.997 15 C -0.097 4.097 16 C 0.069 3.931 17 N -0.520 5.520 18 C 0.094 3.906 19 C -0.091 4.091 20 C -0.131 4.131 21 C -0.133 4.133 22 C -0.127 4.127 23 C -0.125 4.125 24 C -0.107 4.107 25 C 0.083 3.917 26 H 0.019 0.981 27 C -0.136 4.136 28 C -0.093 4.093 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.036 0.964 32 H 0.006 0.994 33 H 0.084 0.916 34 H 0.030 0.970 35 H 0.027 0.973 36 H 0.264 0.736 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.009 0.991 41 H 0.105 0.895 42 H 0.035 0.965 43 H 0.109 0.891 44 H 0.130 0.870 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.137 0.863 48 H 0.071 0.929 49 H 0.067 0.933 50 H 0.066 0.934 51 H 0.068 0.932 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.530 5.633 19.312 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.079 4.079 3 N -0.245 5.245 4 C 0.032 3.968 5 C -0.575 4.575 6 H 0.049 0.951 7 C -0.185 4.185 8 N -0.590 5.590 9 Si 0.764 3.236 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.170 1.170 13 C -0.015 4.015 14 H 0.021 0.979 15 C -0.135 4.135 16 C -0.059 4.059 17 N -0.245 5.245 18 C -0.033 4.033 19 C -0.091 4.091 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.143 4.143 24 C -0.125 4.125 25 C -0.026 4.026 26 H 0.037 0.963 27 C -0.193 4.193 28 C -0.131 4.131 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.024 0.976 33 H 0.102 0.898 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.027 0.973 41 H 0.123 0.877 42 H 0.053 0.947 43 H 0.127 0.873 44 H 0.148 0.852 45 H 0.158 0.842 46 H 0.162 0.838 47 H 0.155 0.845 48 H 0.090 0.910 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.086 0.914 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.000 6.081 19.877 22.273 hybrid contribution 0.739 -0.485 -2.813 2.949 sum 8.739 5.595 17.064 19.971 Atomic orbital electron populations 1.21665 0.94375 1.01570 1.01606 1.22065 0.96665 0.89752 0.99427 1.62575 1.13586 1.15729 1.32648 1.20044 0.95925 0.94495 0.86329 1.21818 1.31544 1.10639 0.93541 0.95144 1.25834 0.96194 1.00546 0.95883 1.70079 1.45578 1.42276 1.01019 0.85811 0.80195 0.79726 0.77910 1.19351 1.20951 1.16958 1.21443 0.88338 0.96076 0.95632 0.97921 1.21471 0.95405 0.96147 1.00452 1.21996 0.95346 0.99231 0.89357 1.62175 1.20397 1.12669 1.29235 1.21177 0.87642 0.92248 1.02209 1.19858 0.98881 0.96000 0.94396 1.21207 0.99729 0.96815 0.97173 1.21348 1.00469 0.93385 0.99860 1.21456 0.99286 1.00382 0.93380 1.21472 0.98394 0.96123 0.98332 1.21247 0.98861 0.93403 0.98989 1.21663 0.95266 0.87553 0.98082 0.96266 1.21825 1.02272 1.00125 0.95106 1.21677 0.95249 0.99875 0.96286 0.91376 0.91309 0.94534 0.97563 0.89757 0.95223 0.95499 0.92686 0.93794 0.90689 0.89938 0.97294 0.87700 0.94726 0.87303 0.85195 0.84158 0.83826 0.84545 0.90970 0.91367 0.91483 0.91361 0.89997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.90 71.98 0.71 -3.81 16 2 C 0.05 1.88 5.27 86.30 0.46 2.34 16 3 N -0.52 -21.73 4.57 -875.03 -4.00 -25.73 16 4 C 0.16 7.72 3.66 85.56 0.31 8.04 16 5 C -0.54 -30.84 8.04 25.60 0.21 -30.63 16 6 H 0.03 1.97 6.12 -2.91 -0.02 1.95 16 7 C 0.01 0.77 5.47 84.66 0.46 1.23 16 8 N -0.95 -59.95 13.96 21.45 0.30 -59.65 16 9 Si 0.94 44.83 27.38 68.60 1.88 46.71 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.25 -10.97 6.68 99.48 0.66 -10.30 16 13 C 0.09 3.70 1.72 45.00 0.08 3.78 16 14 H 0.00 0.13 6.63 -2.38 -0.02 0.12 16 15 C -0.10 -3.61 5.07 30.65 0.16 -3.46 16 16 C 0.07 2.25 4.58 86.33 0.40 2.64 16 17 N -0.52 -13.97 4.64 -875.63 -4.06 -18.02 16 18 C 0.09 2.10 4.52 85.56 0.39 2.48 16 19 C -0.09 -2.06 4.11 -19.86 -0.08 -2.14 16 20 C -0.13 -3.12 7.81 22.27 0.17 -2.94 16 21 C -0.13 -2.81 10.05 22.27 0.22 -2.59 16 22 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 23 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 24 C -0.11 -2.11 9.70 22.27 0.22 -1.89 16 25 C 0.08 2.23 2.40 44.94 0.11 2.34 16 26 H 0.02 0.59 8.14 -2.39 -0.02 0.58 16 27 C -0.14 -2.61 8.78 71.98 0.63 -1.98 16 28 C -0.09 -2.84 4.25 30.65 0.13 -2.71 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.04 1.38 6.47 -2.39 -0.02 1.36 16 32 H 0.01 0.28 6.38 -2.38 -0.02 0.27 16 33 H 0.08 2.76 5.70 -2.39 -0.01 2.75 16 34 H 0.03 1.44 5.74 -2.39 -0.01 1.43 16 35 H 0.03 1.31 5.49 -2.39 -0.01 1.30 16 36 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.04 1.87 6.53 -2.38 -0.02 1.86 16 38 H 0.07 2.68 8.14 -2.39 -0.02 2.67 16 39 H 0.08 2.60 5.65 -2.39 -0.01 2.58 16 40 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 41 H 0.10 1.90 6.79 -2.39 -0.02 1.88 16 42 H 0.03 0.81 8.02 -2.38 -0.02 0.79 16 43 H 0.11 2.71 8.06 -2.91 -0.02 2.69 16 44 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 45 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 46 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 47 H 0.14 2.24 8.06 -2.91 -0.02 2.22 16 48 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 50 H 0.07 1.11 6.55 -2.39 -0.02 1.10 16 51 H 0.07 2.00 6.26 -2.39 -0.01 1.99 16 52 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -67.13 382.94 -0.03 -67.16 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: 0.84 Total: 22.95 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 5.01 Total: -33.42 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -7.76 Total: -103.41 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -67.13 -0.03 -67.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256552220.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.696 kcal (2) G-P(sol) polarization free energy of solvation -67.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds