Wall clock time and date at job start Tue Mar 31 2020 11:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47124 * 2 1 4 4 C 1.53004 * 109.47421 * 239.99859 * 2 1 3 5 5 N 1.46898 * 109.47198 * 120.00114 * 2 1 3 6 6 C 1.46852 * 110.99628 * 295.79033 * 5 2 1 7 7 C 1.53036 * 109.52291 * 185.84155 * 6 5 2 8 8 C 1.53126 * 109.27591 * 300.82010 * 7 6 5 9 9 N 1.46502 * 109.52221 * 177.55795 * 8 7 6 10 10 C 1.36940 * 120.00255 * 304.69230 * 9 8 7 11 11 H 1.07996 * 119.99293 * 321.66170 * 10 9 8 12 12 C 1.38806 * 119.99950 * 141.65932 * 10 9 8 13 13 N 1.31617 * 120.00209 * 339.44188 * 12 10 9 14 14 Si 1.86803 * 119.99934 * 159.43691 * 12 10 9 15 15 H 1.48508 * 109.46787 * 60.00062 * 14 12 10 16 16 H 1.48500 * 109.47281 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47274 * 300.00310 * 14 12 10 18 18 C 1.46496 * 119.99755 * 124.68792 * 9 8 7 19 19 C 1.50703 * 109.47398 * 90.00159 * 18 9 8 20 20 C 1.38233 * 120.00151 * 269.73035 * 19 18 9 21 21 C 1.38237 * 120.00301 * 179.76040 * 20 19 18 22 22 C 1.38235 * 119.99627 * 0.50578 * 21 20 19 23 23 C 1.38241 * 119.99883 * 359.74651 * 22 21 20 24 24 C 1.38231 * 120.00154 * 0.02562 * 23 22 21 25 25 C 1.53116 * 109.16068 * 57.65434 * 8 7 6 26 26 C 1.46843 * 111.00403 * 59.99878 * 5 2 1 27 27 H 1.08998 * 109.47132 * 300.00295 * 1 2 3 28 28 H 1.09001 * 109.47144 * 59.99999 * 1 2 3 29 29 H 1.08998 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47458 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47072 * 299.99467 * 3 2 1 32 32 H 1.08998 * 109.47357 * 59.99843 * 3 2 1 33 33 H 1.08997 * 109.46778 * 300.00443 * 4 2 1 34 34 H 1.09001 * 109.46845 * 59.99959 * 4 2 1 35 35 H 1.08995 * 109.47575 * 180.02562 * 4 2 1 36 36 H 1.08994 * 109.46464 * 65.82346 * 6 5 2 37 37 H 1.08999 * 109.46222 * 305.85544 * 6 5 2 38 38 H 1.09001 * 109.50840 * 180.88264 * 7 6 5 39 39 H 1.09004 * 109.50493 * 60.75803 * 7 6 5 40 40 H 1.09000 * 109.51899 * 297.74816 * 8 7 6 41 41 H 0.97004 * 120.00113 * 179.97438 * 13 12 10 42 42 H 1.08998 * 109.47492 * 210.00029 * 18 9 8 43 43 H 1.09003 * 109.47832 * 330.00376 * 18 9 8 44 44 H 1.08000 * 119.99708 * 359.97438 * 20 19 18 45 45 H 1.07994 * 120.00368 * 180.22817 * 21 20 19 46 46 H 1.07997 * 120.00083 * 179.72700 * 22 21 20 47 47 H 1.08002 * 119.99446 * 179.97438 * 23 22 21 48 48 H 1.07998 * 119.99794 * 179.97438 * 24 23 22 49 49 H 1.09003 * 109.50334 * 62.28919 * 25 8 7 50 50 H 1.09001 * 109.50182 * 182.40383 * 25 8 7 51 51 H 1.09001 * 109.46231 * 54.14410 * 26 5 2 52 52 H 1.09006 * 109.46183 * 294.18083 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0197 -0.6925 1.1994 6 6 1.6327 0.0291 2.4185 7 6 2.2800 -0.6374 3.6345 8 6 1.8215 -2.0962 3.7152 9 7 2.4833 -2.7557 4.8436 10 6 3.8498 -2.7526 4.9330 11 1 4.4494 -2.8643 4.0418 12 6 4.4641 -2.6059 6.1691 13 7 3.8006 -2.0767 7.1751 14 14 6.2325 -3.1597 6.4048 15 1 7.1142 -2.4096 5.4746 16 1 6.6512 -2.8966 7.8051 17 1 6.3377 -4.6138 6.1222 18 6 1.6832 -3.4184 5.8764 19 6 1.4598 -4.8584 5.4921 20 6 0.3525 -5.2100 4.7430 21 6 0.1502 -6.5301 4.3862 22 6 1.0497 -7.5001 4.7874 23 6 2.1543 -7.1492 5.5409 24 6 2.3590 -5.8284 5.8937 25 6 2.1936 -2.8126 2.4141 26 6 1.5489 -2.0830 1.2334 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 0.5483 0.0055 2.5257 37 1 1.9683 1.0639 2.3500 38 1 1.9800 -0.1111 4.5407 39 1 3.3648 -0.6019 3.5345 40 1 0.7410 -2.1312 3.8542 41 1 4.2298 -1.9745 8.0390 42 1 2.2111 -3.3744 6.8291 43 1 0.7214 -2.9142 5.9704 44 1 -0.3527 -4.4529 4.4336 45 1 -0.7129 -6.8043 3.7979 46 1 0.8894 -8.5321 4.5124 47 1 2.8568 -7.9071 5.8547 48 1 3.2218 -5.5544 6.4827 49 1 3.2771 -2.8113 2.2949 50 1 1.8319 -3.8403 2.4482 51 1 1.8235 -2.5822 0.3042 52 1 0.4647 -2.0967 1.3462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256573734.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:37 Heat of formation + Delta-G solvation = 44.205393 kcal Electronic energy + Delta-G solvation = -28219.631465 eV Core-core repulsion = 24798.180391 eV Total energy + Delta-G solvation = -3421.451074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.53577 -38.51263 -36.37972 -33.96262 -31.53041 -30.77956 -30.52392 -30.19114 -28.46071 -27.30026 -27.13593 -25.51785 -24.04925 -22.10093 -21.82124 -21.74133 -20.18210 -19.38522 -18.46532 -16.50025 -16.17947 -15.76872 -14.99482 -14.51033 -14.45051 -14.23992 -14.21520 -13.99674 -13.88338 -13.63386 -13.31805 -12.92455 -12.75300 -12.66687 -12.43359 -12.19502 -11.92852 -11.79225 -11.69289 -11.53298 -11.29963 -11.14708 -10.99796 -10.88352 -10.80819 -10.72231 -10.57760 -10.43984 -10.33933 -10.27284 -9.95450 -9.74042 -9.60294 -9.36614 -8.45307 -8.25772 -7.96196 -7.85909 -6.53272 -5.78175 -3.34546 2.06173 2.09909 3.37889 3.43570 3.46869 4.16132 4.42192 4.55366 4.87775 4.98184 5.21737 5.32832 5.37882 5.47108 5.49058 5.49838 5.53145 5.59101 5.64051 5.67160 5.80191 5.83150 5.87330 5.89735 5.91705 5.94411 5.97274 6.07796 6.10037 6.18681 6.20116 6.26354 6.29821 6.38411 6.45765 6.48461 6.50373 6.55023 6.74130 6.81760 6.87181 6.90947 7.10068 7.18242 7.22859 7.37442 7.44310 7.57824 7.59844 7.67106 7.77312 7.87221 8.55266 9.20261 9.82104 10.41140 11.22028 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.004895 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.093485 B = 5719.136161 C = 7318.747396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.100 3.900 3 C -0.140 4.140 4 C -0.138 4.138 5 N -0.521 5.521 6 C 0.055 3.945 7 C -0.113 4.113 8 C 0.181 3.819 9 N -0.568 5.568 10 C -0.244 4.244 11 H 0.060 0.940 12 C 0.015 3.985 13 N -0.886 5.886 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.291 1.291 17 H -0.283 1.283 18 C 0.174 3.826 19 C -0.067 4.067 20 C -0.123 4.123 21 C -0.130 4.130 22 C -0.145 4.145 23 C -0.128 4.128 24 C -0.099 4.099 25 C -0.123 4.123 26 C 0.058 3.942 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.024 0.976 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.039 0.961 41 H 0.254 0.746 42 H 0.102 0.898 43 H 0.031 0.969 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.118 0.882 49 H 0.070 0.930 50 H 0.055 0.945 51 H 0.066 0.934 52 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 0.059 -10.498 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.010 3.990 3 C -0.198 4.198 4 C -0.196 4.196 5 N -0.246 5.246 6 C -0.074 4.074 7 C -0.153 4.153 8 C 0.074 3.926 9 N -0.286 5.286 10 C -0.374 4.374 11 H 0.077 0.923 12 C -0.185 4.185 13 N -0.528 5.528 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.217 1.217 17 H -0.209 1.209 18 C 0.048 3.952 19 C -0.070 4.070 20 C -0.142 4.142 21 C -0.148 4.148 22 C -0.164 4.164 23 C -0.146 4.146 24 C -0.118 4.118 25 C -0.163 4.163 26 C -0.070 4.070 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.120 0.880 43 H 0.049 0.951 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.125 0.875 47 H 0.127 0.873 48 H 0.136 0.864 49 H 0.089 0.911 50 H 0.073 0.927 51 H 0.084 0.916 52 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -6.688 0.143 -10.311 12.291 hybrid contribution 0.049 -0.425 0.116 0.444 sum -6.638 -0.282 -10.195 12.169 Atomic orbital electron populations 1.22488 0.97589 1.01964 1.01817 1.21040 0.92032 0.94474 0.91435 1.21913 1.01955 0.94623 1.01264 1.21880 1.01905 1.00024 0.95750 1.62170 1.59332 1.01947 1.01165 1.22245 0.97055 0.97771 0.90281 1.21890 1.02197 0.96682 0.94483 1.20377 0.93881 0.90625 0.87737 1.43737 1.02535 1.58487 1.23837 1.18856 0.81543 1.44039 0.92976 0.92286 1.25123 0.97185 0.98508 0.97726 1.69972 1.37076 1.43288 1.02490 0.86585 0.85569 0.79149 0.76833 1.20697 1.21703 1.20889 1.20048 0.94304 0.84522 0.96289 1.21266 0.92283 0.98941 0.94551 1.20991 0.98271 0.95395 0.99513 1.20954 0.99202 0.93643 1.00974 1.20868 0.96125 0.98450 1.00941 1.21079 0.97606 0.96485 0.99400 1.21104 0.98901 0.92068 0.99707 1.22031 1.01778 0.98020 0.94453 1.22152 0.96622 0.88830 0.99427 0.92479 0.92653 0.92474 0.91791 0.92807 0.92382 0.92580 0.92817 0.91838 0.95831 0.91320 0.92175 0.90501 0.94300 0.93548 0.88017 0.95078 0.87423 0.87493 0.87495 0.87305 0.86379 0.91138 0.92656 0.91567 0.95675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 7.79 37.16 0.29 -1.76 16 2 C 0.10 1.23 0.71 -131.60 -0.09 1.14 16 3 C -0.14 -1.59 8.12 37.16 0.30 -1.29 16 4 C -0.14 -1.55 8.25 37.16 0.31 -1.25 16 5 N -0.52 -7.87 4.47 -219.02 -0.98 -8.85 16 6 C 0.05 0.86 4.67 -3.83 -0.02 0.85 16 7 C -0.11 -2.21 5.32 -26.65 -0.14 -2.35 16 8 C 0.18 3.63 2.70 -67.80 -0.18 3.44 16 9 N -0.57 -13.12 2.35 -166.88 -0.39 -13.52 16 10 C -0.24 -6.25 8.02 -15.06 -0.12 -6.37 16 11 H 0.06 1.57 7.00 -52.49 -0.37 1.20 16 12 C 0.01 0.39 4.97 -17.43 -0.09 0.30 16 13 N -0.89 -24.19 11.47 55.49 0.64 -23.56 16 14 Si 0.89 21.06 29.60 -169.99 -5.03 16.03 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 C 0.17 3.92 5.40 -5.19 -0.03 3.90 16 19 C -0.07 -1.37 5.46 -104.62 -0.57 -1.94 16 20 C -0.12 -2.21 9.70 -39.58 -0.38 -2.59 16 21 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 22 C -0.15 -2.33 10.05 -39.58 -0.40 -2.72 16 23 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 24 C -0.10 -1.99 9.70 -39.58 -0.38 -2.38 16 25 C -0.12 -2.28 5.44 -26.66 -0.15 -2.42 16 26 C 0.06 0.89 4.64 -3.84 -0.02 0.87 16 27 H 0.06 0.68 6.63 -51.93 -0.34 0.33 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.67 6.22 -51.93 -0.32 0.35 16 33 H 0.06 0.63 6.28 -51.93 -0.33 0.31 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.02 0.37 6.71 -51.93 -0.35 0.02 16 37 H 0.07 1.03 5.90 -51.93 -0.31 0.72 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.71 7.49 -51.93 -0.39 1.32 16 40 H 0.04 0.77 7.78 -51.93 -0.40 0.36 16 41 H 0.25 6.81 8.31 -40.82 -0.34 6.48 16 42 H 0.10 2.59 5.48 -51.93 -0.28 2.30 16 43 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 44 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 45 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 47 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 48 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 49 H 0.07 1.47 7.09 -51.93 -0.37 1.10 16 50 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 51 H 0.07 0.96 6.01 -51.93 -0.31 0.65 16 52 H 0.03 0.38 6.63 -51.93 -0.34 0.04 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -26.43 389.42 -11.44 -37.87 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -9.07 Total: 5.84 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: -2.47 Total: -19.69 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.73 Total: -45.92 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -26.43 -11.44 -37.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256573734.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.078 kcal (2) G-P(sol) polarization free energy of solvation -26.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds