Wall clock time and date at job start Tue Mar 31 2020 11:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47124 * 2 1 4 4 C 1.53004 * 109.47421 * 239.99859 * 2 1 3 5 5 N 1.46898 * 109.47198 * 120.00114 * 2 1 3 6 6 C 1.46852 * 110.99628 * 295.79033 * 5 2 1 7 7 C 1.53036 * 109.52291 * 185.84155 * 6 5 2 8 8 C 1.53126 * 109.27591 * 300.82010 * 7 6 5 9 9 N 1.46502 * 109.52221 * 177.55795 * 8 7 6 10 10 C 1.36940 * 120.00255 * 304.69230 * 9 8 7 11 11 H 1.07996 * 119.99293 * 321.66170 * 10 9 8 12 12 C 1.38806 * 119.99950 * 141.65932 * 10 9 8 13 13 N 1.31617 * 120.00209 * 339.44188 * 12 10 9 14 14 Si 1.86803 * 119.99934 * 159.43691 * 12 10 9 15 15 H 1.48508 * 109.46787 * 60.00062 * 14 12 10 16 16 H 1.48500 * 109.47281 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47274 * 300.00310 * 14 12 10 18 18 C 1.46496 * 119.99755 * 124.68792 * 9 8 7 19 19 C 1.50703 * 109.47398 * 90.00159 * 18 9 8 20 20 C 1.38233 * 120.00151 * 269.73035 * 19 18 9 21 21 C 1.38237 * 120.00301 * 179.76040 * 20 19 18 22 22 C 1.38235 * 119.99627 * 0.50578 * 21 20 19 23 23 C 1.38241 * 119.99883 * 359.74651 * 22 21 20 24 24 C 1.38231 * 120.00154 * 0.02562 * 23 22 21 25 25 C 1.53116 * 109.16068 * 57.65434 * 8 7 6 26 26 C 1.46843 * 111.00403 * 59.99878 * 5 2 1 27 27 H 1.08998 * 109.47132 * 300.00295 * 1 2 3 28 28 H 1.09001 * 109.47144 * 59.99999 * 1 2 3 29 29 H 1.08998 * 109.47039 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47458 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47072 * 299.99467 * 3 2 1 32 32 H 1.08998 * 109.47357 * 59.99843 * 3 2 1 33 33 H 1.08997 * 109.46778 * 300.00443 * 4 2 1 34 34 H 1.09001 * 109.46845 * 59.99959 * 4 2 1 35 35 H 1.08995 * 109.47575 * 180.02562 * 4 2 1 36 36 H 1.08994 * 109.46464 * 65.82346 * 6 5 2 37 37 H 1.08999 * 109.46222 * 305.85544 * 6 5 2 38 38 H 1.09001 * 109.50840 * 180.88264 * 7 6 5 39 39 H 1.09004 * 109.50493 * 60.75803 * 7 6 5 40 40 H 1.09000 * 109.51899 * 297.74816 * 8 7 6 41 41 H 0.97004 * 120.00113 * 179.97438 * 13 12 10 42 42 H 1.08998 * 109.47492 * 210.00029 * 18 9 8 43 43 H 1.09003 * 109.47832 * 330.00376 * 18 9 8 44 44 H 1.08000 * 119.99708 * 359.97438 * 20 19 18 45 45 H 1.07994 * 120.00368 * 180.22817 * 21 20 19 46 46 H 1.07997 * 120.00083 * 179.72700 * 22 21 20 47 47 H 1.08002 * 119.99446 * 179.97438 * 23 22 21 48 48 H 1.07998 * 119.99794 * 179.97438 * 24 23 22 49 49 H 1.09003 * 109.50334 * 62.28919 * 25 8 7 50 50 H 1.09001 * 109.50182 * 182.40383 * 25 8 7 51 51 H 1.09001 * 109.46231 * 54.14410 * 26 5 2 52 52 H 1.09006 * 109.46183 * 294.18083 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 7 2.0197 -0.6925 1.1994 6 6 1.6327 0.0291 2.4185 7 6 2.2800 -0.6374 3.6345 8 6 1.8215 -2.0962 3.7152 9 7 2.4833 -2.7557 4.8436 10 6 3.8498 -2.7526 4.9330 11 1 4.4494 -2.8643 4.0418 12 6 4.4641 -2.6059 6.1691 13 7 3.8006 -2.0767 7.1751 14 14 6.2325 -3.1597 6.4048 15 1 7.1142 -2.4096 5.4746 16 1 6.6512 -2.8966 7.8051 17 1 6.3377 -4.6138 6.1222 18 6 1.6832 -3.4184 5.8764 19 6 1.4598 -4.8584 5.4921 20 6 0.3525 -5.2100 4.7430 21 6 0.1502 -6.5301 4.3862 22 6 1.0497 -7.5001 4.7874 23 6 2.1543 -7.1492 5.5409 24 6 2.3590 -5.8284 5.8937 25 6 2.1936 -2.8126 2.4141 26 6 1.5489 -2.0830 1.2334 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 0.5483 0.0055 2.5257 37 1 1.9683 1.0639 2.3500 38 1 1.9800 -0.1111 4.5407 39 1 3.3648 -0.6019 3.5345 40 1 0.7410 -2.1312 3.8542 41 1 4.2298 -1.9745 8.0390 42 1 2.2111 -3.3744 6.8291 43 1 0.7214 -2.9142 5.9704 44 1 -0.3527 -4.4529 4.4336 45 1 -0.7129 -6.8043 3.7979 46 1 0.8894 -8.5321 4.5124 47 1 2.8568 -7.9071 5.8547 48 1 3.2218 -5.5544 6.4827 49 1 3.2771 -2.8113 2.2949 50 1 1.8319 -3.8403 2.4482 51 1 1.8235 -2.5822 0.3042 52 1 0.4647 -2.0967 1.3462 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256573734.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:36 Heat of formation + Delta-G solvation = 32.654656 kcal Electronic energy + Delta-G solvation = -28220.132342 eV Core-core repulsion = 24798.180391 eV Total energy + Delta-G solvation = -3421.951951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79842 -39.93039 -37.90500 -35.46362 -33.36136 -32.20320 -31.90066 -31.59192 -30.00240 -28.18003 -28.11529 -27.35272 -25.63235 -23.49915 -23.29637 -23.18076 -21.74458 -20.92089 -19.64608 -18.25772 -17.51483 -17.16775 -16.69089 -15.93971 -15.90571 -15.73572 -15.65258 -15.31072 -15.07755 -15.00472 -14.67985 -14.40823 -14.13639 -14.10055 -13.74266 -13.42466 -13.30740 -13.08510 -12.92563 -12.76527 -12.68670 -12.65332 -12.59083 -12.37553 -12.27174 -12.22956 -11.90348 -11.87350 -11.79442 -11.65650 -11.59410 -11.45814 -11.04949 -10.95913 -10.44290 -9.65485 -9.41660 -9.03720 -8.46960 -7.77813 -5.37941 0.65932 0.68537 1.43276 1.45635 1.51210 2.51667 3.00589 3.04055 3.31000 3.74893 3.91463 4.05839 4.11101 4.14474 4.20676 4.27081 4.33287 4.33943 4.38301 4.43968 4.49595 4.59776 4.67971 4.70408 4.76236 4.81130 4.82281 4.83876 4.88396 4.93931 4.96844 5.00654 5.01921 5.05907 5.08259 5.24553 5.25402 5.32294 5.33992 5.36473 5.44844 5.51770 5.59635 5.63114 5.71679 5.73126 5.75934 5.82114 6.08334 6.32079 6.32768 6.42744 6.55016 7.22626 7.91290 8.44864 9.17789 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011233 B = 0.004895 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.093485 B = 5719.136161 C = 7318.747396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.096 3.904 3 C -0.139 4.139 4 C -0.135 4.135 5 N -0.536 5.536 6 C 0.068 3.932 7 C -0.104 4.104 8 C 0.179 3.821 9 N -0.579 5.579 10 C -0.237 4.237 11 H 0.045 0.955 12 C -0.027 4.027 13 N -0.913 5.913 14 Si 0.938 3.062 15 H -0.280 1.280 16 H -0.293 1.293 17 H -0.282 1.282 18 C 0.180 3.820 19 C -0.087 4.087 20 C -0.127 4.127 21 C -0.121 4.121 22 C -0.136 4.136 23 C -0.130 4.130 24 C -0.126 4.126 25 C -0.109 4.109 26 C 0.068 3.932 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.034 0.966 37 H 0.078 0.922 38 H 0.037 0.963 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.249 0.751 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.118 0.882 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.130 0.870 48 H 0.088 0.912 49 H 0.040 0.960 50 H 0.050 0.950 51 H 0.081 0.919 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 -1.162 -13.359 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.007 3.993 3 C -0.196 4.196 4 C -0.193 4.193 5 N -0.261 5.261 6 C -0.060 4.060 7 C -0.143 4.143 8 C 0.073 3.927 9 N -0.298 5.298 10 C -0.368 4.368 11 H 0.062 0.938 12 C -0.224 4.224 13 N -0.557 5.557 14 Si 0.767 3.233 15 H -0.206 1.206 16 H -0.219 1.219 17 H -0.208 1.208 18 C 0.055 3.945 19 C -0.089 4.089 20 C -0.146 4.146 21 C -0.139 4.139 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.148 4.148 26 C -0.060 4.060 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.136 0.864 45 H 0.162 0.838 46 H 0.164 0.836 47 H 0.147 0.853 48 H 0.107 0.893 49 H 0.059 0.941 50 H 0.068 0.932 51 H 0.099 0.901 52 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.639 -1.085 -13.197 15.811 hybrid contribution 0.592 -0.097 0.962 1.134 sum -8.047 -1.182 -12.236 14.692 Atomic orbital electron populations 1.22432 0.96359 1.02045 1.02526 1.21189 0.92996 0.94751 0.90320 1.21908 1.01286 0.94188 1.02211 1.21865 1.01246 1.00172 0.95975 1.62113 1.60200 1.01968 1.01854 1.22035 0.97093 0.97801 0.89099 1.21722 1.00186 0.96752 0.95661 1.20500 0.93889 0.90780 0.87526 1.43886 1.01926 1.59415 1.24555 1.18826 0.82860 1.42737 0.92348 0.93771 1.25601 0.99840 0.99238 0.97717 1.70083 1.38095 1.45027 1.02523 0.85811 0.82522 0.78603 0.76391 1.20601 1.21886 1.20839 1.19811 0.93406 0.86516 0.94816 1.20985 0.94065 0.97364 0.96531 1.21108 0.97437 0.96996 0.99029 1.21367 1.00060 0.92458 1.00033 1.21321 0.94677 1.00390 0.99019 1.21322 0.98778 0.95440 0.99268 1.21015 0.98577 0.93847 1.01028 1.21820 1.00017 0.98036 0.94973 1.22025 0.96785 0.88882 0.98326 0.93109 0.90636 0.92674 0.92875 0.90516 0.92794 0.92601 0.90575 0.92899 0.94782 0.90349 0.94434 0.93870 0.93654 0.94146 0.91438 0.95111 0.86422 0.83755 0.83638 0.85257 0.89340 0.94080 0.93169 0.90054 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 7.79 71.98 0.56 -2.85 16 2 C 0.10 2.14 0.71 3.53 0.00 2.14 16 3 C -0.14 -2.83 8.12 71.98 0.58 -2.25 16 4 C -0.14 -2.65 8.25 71.98 0.59 -2.06 16 5 N -0.54 -15.54 4.47 -846.86 -3.79 -19.33 16 6 C 0.07 2.12 4.67 86.32 0.40 2.52 16 7 C -0.10 -4.22 5.32 30.65 0.16 -4.06 16 8 C 0.18 7.38 2.70 45.07 0.12 7.51 16 9 N -0.58 -28.07 2.35 -681.89 -1.60 -29.67 16 10 C -0.24 -12.79 8.02 84.03 0.67 -12.12 16 11 H 0.04 2.49 7.00 -2.91 -0.02 2.47 16 12 C -0.03 -1.47 4.97 84.86 0.42 -1.05 16 13 N -0.91 -52.74 11.47 21.65 0.25 -52.49 16 14 Si 0.94 45.23 29.60 68.60 2.03 47.26 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 17 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 18 C 0.18 8.55 5.40 85.63 0.46 9.01 16 19 C -0.09 -3.60 5.46 -19.87 -0.11 -3.71 16 20 C -0.13 -4.38 9.70 22.27 0.22 -4.16 16 21 C -0.12 -3.47 10.05 22.27 0.22 -3.24 16 22 C -0.14 -3.84 10.05 22.27 0.22 -3.61 16 23 C -0.13 -4.34 10.05 22.27 0.22 -4.12 16 24 C -0.13 -5.20 9.70 22.27 0.22 -4.98 16 25 C -0.11 -4.05 5.44 30.64 0.17 -3.88 16 26 C 0.07 1.99 4.64 86.32 0.40 2.39 16 27 H 0.05 1.06 6.63 -2.39 -0.02 1.04 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.10 6.54 -2.39 -0.02 1.09 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.14 6.22 -2.39 -0.01 1.12 16 33 H 0.06 1.09 6.28 -2.39 -0.02 1.08 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.03 1.01 6.71 -2.39 -0.02 0.99 16 37 H 0.08 2.30 5.90 -2.39 -0.01 2.29 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 2.02 7.49 -2.38 -0.02 2.00 16 40 H 0.05 1.80 7.78 -2.39 -0.02 1.78 16 41 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 42 H 0.07 3.69 5.48 -2.39 -0.01 3.68 16 43 H 0.03 1.40 7.83 -2.39 -0.02 1.38 16 44 H 0.12 3.75 8.06 -2.91 -0.02 3.73 16 45 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 46 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 47 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 48 H 0.09 4.09 8.06 -2.91 -0.02 4.06 16 49 H 0.04 1.76 7.09 -2.39 -0.02 1.74 16 50 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.08 2.17 6.01 -2.39 -0.01 2.15 16 52 H 0.04 1.00 6.63 -2.38 -0.02 0.99 16 Total: -1.00 -60.81 389.42 3.31 -57.50 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.87 Total: 25.24 kcal Atomic # 6 Polarization: -34.06 SS G_CDS: 5.55 Total: -28.51 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -5.14 Total: -101.49 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Total: -60.81 3.31 -57.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256573734.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.157 kcal (2) G-P(sol) polarization free energy of solvation -60.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds