Wall clock time and date at job start Tue Mar 31 2020 11:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47023 * 2 1 4 4 C 1.53004 * 109.46770 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47199 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99707 * 269.99858 * 5 4 3 7 7 H 1.08003 * 119.99805 * 141.87437 * 6 5 4 8 8 C 1.38807 * 119.99965 * 321.87289 * 6 5 4 9 9 N 1.31619 * 119.99958 * 156.85049 * 8 6 5 10 10 Si 1.86802 * 120.00156 * 336.85657 * 8 6 5 11 11 H 1.48492 * 109.47316 * 95.39053 * 10 8 6 12 12 H 1.48501 * 109.46691 * 215.39014 * 10 8 6 13 13 H 1.48498 * 109.47148 * 335.38603 * 10 8 6 14 14 C 1.46502 * 120.00253 * 89.99688 * 5 4 3 15 15 C 1.53125 * 109.52114 * 245.12005 * 14 5 4 16 16 C 1.53037 * 109.27395 * 182.37433 * 15 14 5 17 17 N 1.46848 * 109.52382 * 59.18294 * 16 15 14 18 18 C 1.46902 * 111.00277 * 174.16142 * 17 16 15 19 19 C 1.50697 * 109.47209 * 169.99918 * 18 17 16 20 20 C 1.38233 * 120.00235 * 89.99918 * 19 18 17 21 21 C 1.38240 * 119.99744 * 179.97438 * 20 19 18 22 22 C 1.38236 * 120.00165 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99840 * 0.07305 * 22 21 20 24 24 C 1.38230 * 120.00328 * 359.88799 * 23 22 21 25 25 C 1.46855 * 111.19340 * 298.25138 * 17 16 15 26 26 C 1.53040 * 109.52132 * 61.74544 * 25 17 16 27 27 H 1.09000 * 109.47023 * 300.00465 * 1 2 3 28 28 H 1.08998 * 109.47335 * 59.99870 * 1 2 3 29 29 H 1.08994 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46898 * 240.00070 * 2 1 3 31 31 H 1.08996 * 109.46822 * 120.00187 * 2 1 3 32 32 H 1.09001 * 109.47227 * 60.00271 * 3 2 1 33 33 H 1.08999 * 109.47080 * 299.99449 * 3 2 1 34 34 H 1.09000 * 109.47388 * 59.99466 * 4 3 2 35 35 H 1.09001 * 109.47144 * 299.99376 * 4 3 2 36 36 H 0.97003 * 120.00336 * 180.02562 * 9 8 6 37 37 H 1.09006 * 109.52131 * 5.24364 * 14 5 4 38 38 H 1.08994 * 109.50113 * 62.43616 * 15 14 5 39 39 H 1.09000 * 109.53174 * 302.33678 * 15 14 5 40 40 H 1.08992 * 109.46702 * 299.16138 * 16 15 14 41 41 H 1.09000 * 109.45353 * 179.18313 * 16 15 14 42 42 H 1.08994 * 109.47244 * 49.99031 * 18 17 16 43 43 H 1.08998 * 109.46503 * 289.99531 * 18 17 16 44 44 H 1.08002 * 119.99993 * 359.96824 * 20 19 18 45 45 H 1.07997 * 119.99726 * 179.72356 * 21 20 19 46 46 H 1.07992 * 119.99613 * 179.97438 * 22 21 20 47 47 H 1.08001 * 119.99564 * 179.97438 * 23 22 21 48 48 H 1.08000 * 120.00289 * 180.10950 * 24 23 22 49 49 H 1.09007 * 109.46273 * 181.75621 * 25 17 16 50 50 H 1.08997 * 109.46641 * 301.72484 * 25 17 16 51 51 H 1.09001 * 109.50109 * 180.87652 * 26 25 17 52 52 H 1.08999 * 109.50437 * 60.76001 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2862 3.4698 -1.1857 7 1 4.0442 4.5177 -1.2848 8 6 4.8282 2.7780 -2.2602 9 7 4.6379 3.2143 -3.4873 10 14 5.8275 1.2276 -1.9647 11 1 4.9501 0.0383 -2.1084 12 1 6.9296 1.1525 -2.9571 13 1 6.3972 1.2598 -0.5937 14 6 4.3032 3.5135 1.2690 15 6 3.3294 4.6869 1.4095 16 6 3.6288 5.4390 2.7083 17 7 5.0130 5.9286 2.6840 18 6 5.2934 6.7731 3.8528 19 6 6.7722 7.0537 3.9267 20 6 7.2982 8.1619 3.2894 21 6 8.6546 8.4195 3.3577 22 6 9.4850 7.5692 4.0637 23 6 8.9591 6.4605 4.7002 24 6 7.6026 6.2033 4.6326 25 6 5.9681 4.8164 2.5972 26 6 5.7386 4.0457 1.2951 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9286 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 5.0163 2.7307 -4.2382 37 1 4.1573 2.8181 2.0957 38 1 2.3070 4.3102 1.4345 39 1 3.4479 5.3623 0.5622 40 1 3.4961 4.7670 3.5560 41 1 2.9466 6.2837 2.8041 42 1 4.9757 6.2569 4.7587 43 1 4.7494 7.7131 3.7606 44 1 6.6494 8.8264 2.7381 45 1 9.0662 9.2828 2.8561 46 1 10.5447 7.7703 4.1167 47 1 9.6079 5.7960 5.2514 48 1 7.1915 5.3380 5.1314 49 1 6.9850 5.2088 2.6125 50 1 5.8245 4.1472 3.4455 51 1 6.4373 3.2109 1.2384 52 1 5.8956 4.7108 0.4460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256608836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:45 Heat of formation + Delta-G solvation = 38.145142 kcal Electronic energy + Delta-G solvation = -27330.317503 eV Core-core repulsion = 23908.603637 eV Total energy + Delta-G solvation = -3421.713866 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.77720 -38.31558 -36.34433 -34.26279 -32.77531 -31.40167 -30.99073 -30.41971 -29.88698 -27.85442 -25.86432 -24.08488 -22.97287 -22.80609 -22.35934 -21.15547 -20.56015 -20.33922 -19.04711 -16.78098 -16.44051 -15.82038 -15.37170 -15.28982 -15.20054 -14.56885 -14.44930 -14.21701 -13.83086 -13.59186 -13.41611 -13.15576 -13.12831 -12.70945 -12.61023 -12.47043 -12.16880 -12.11624 -11.96603 -11.62928 -11.54566 -11.19534 -11.04677 -10.99772 -10.90971 -10.57962 -10.55291 -10.46037 -10.25086 -10.18494 -9.95583 -9.72419 -9.52519 -9.24637 -8.91992 -8.79786 -8.39328 -7.99516 -6.69813 -5.91963 -3.31637 1.29081 1.37961 3.35849 3.51438 3.56686 3.68347 4.32023 4.59511 4.71644 4.80623 4.89797 4.95838 5.06633 5.26506 5.34822 5.41851 5.42379 5.44168 5.47736 5.52792 5.59580 5.61812 5.62576 5.74355 5.83525 5.94863 5.95664 5.96590 6.01543 6.06468 6.18614 6.22249 6.26962 6.31134 6.31823 6.35268 6.40792 6.44815 6.47223 6.56762 6.60611 6.62600 6.73187 6.76969 6.95914 6.98919 7.11252 7.16741 7.22393 7.40505 7.44285 8.15592 8.49397 9.09858 9.81262 10.22658 11.23920 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.003564 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.581434 B = 7854.818636 C = 8812.089225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C -0.132 4.132 4 C 0.139 3.861 5 N -0.602 5.602 6 C -0.255 4.255 7 H 0.079 0.921 8 C 0.037 3.963 9 N -0.901 5.901 10 Si 0.871 3.129 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.270 1.270 14 C 0.180 3.820 15 C -0.122 4.122 16 C 0.062 3.938 17 N -0.527 5.527 18 C 0.092 3.908 19 C -0.077 4.077 20 C -0.098 4.098 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.123 4.123 24 C -0.114 4.114 25 C 0.057 3.943 26 C -0.120 4.120 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.024 0.976 41 H 0.066 0.934 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.073 0.927 50 H 0.021 0.979 51 H 0.055 0.945 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.054 4.592 16.773 17.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.172 4.172 4 C 0.013 3.987 5 N -0.323 5.323 6 C -0.383 4.383 7 H 0.097 0.903 8 C -0.163 4.163 9 N -0.542 5.542 10 Si 0.702 3.298 11 H -0.216 1.216 12 H -0.232 1.232 13 H -0.195 1.195 14 C 0.073 3.927 15 C -0.162 4.162 16 C -0.067 4.067 17 N -0.252 5.252 18 C -0.035 4.035 19 C -0.077 4.077 20 C -0.117 4.117 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.132 4.132 25 C -0.071 4.071 26 C -0.159 4.159 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.135 0.865 49 H 0.092 0.908 50 H 0.039 0.961 51 H 0.074 0.926 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.139 4.853 16.158 17.006 hybrid contribution 0.559 -1.476 0.682 1.719 sum 2.697 3.377 16.840 17.386 Atomic orbital electron populations 1.21748 0.96574 1.00580 1.01594 1.21531 0.95237 0.98480 1.01150 1.22134 0.98637 0.94536 1.01883 1.21189 0.92048 0.86676 0.98754 1.44221 1.75041 1.11085 1.01957 1.18643 1.36130 0.96651 0.86899 0.90315 1.25447 0.97991 0.97566 0.95258 1.69883 1.45314 1.41203 0.97832 0.87007 0.80866 0.84170 0.77739 1.21613 1.23228 1.19511 1.20377 0.92278 0.92084 0.87973 1.22024 0.99295 0.98565 0.96319 1.22114 0.88672 0.97835 0.98030 1.62074 1.03369 1.21228 1.38538 1.21081 0.91740 0.98379 0.92287 1.19800 0.95475 0.95101 0.97323 1.21059 0.95236 0.97189 0.98213 1.21157 0.93777 0.99725 0.99299 1.21123 0.99596 0.95276 0.98213 1.21085 0.95158 0.97689 1.00190 1.21076 0.93716 0.98951 0.99476 1.22254 0.96130 0.91030 0.97662 1.21948 0.98210 0.99154 0.96615 0.93190 0.92777 0.93606 0.92466 0.92934 0.93181 0.91366 0.93013 0.94935 0.92922 0.93942 0.92341 0.90452 0.95740 0.91520 0.94470 0.90126 0.85806 0.86163 0.86374 0.86309 0.86484 0.90835 0.96089 0.92585 0.89886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 37.16 0.37 -1.64 16 2 C -0.13 -2.01 5.93 -26.73 -0.16 -2.16 16 3 C -0.13 -2.49 5.54 -26.73 -0.15 -2.64 16 4 C 0.14 2.98 4.50 -4.04 -0.02 2.97 16 5 N -0.60 -13.84 2.01 -165.52 -0.33 -14.17 16 6 C -0.25 -6.88 8.46 -15.06 -0.13 -7.01 16 7 H 0.08 2.33 7.18 -52.48 -0.38 1.95 16 8 C 0.04 1.07 5.28 -17.43 -0.09 0.97 16 9 N -0.90 -27.39 13.97 55.49 0.78 -26.62 16 10 Si 0.87 22.33 25.13 -169.99 -4.27 18.06 16 11 H -0.29 -7.21 6.66 56.52 0.38 -6.84 16 12 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 13 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.18 3.52 2.70 -67.81 -0.18 3.33 16 15 C -0.12 -2.18 5.45 -26.65 -0.15 -2.32 16 16 C 0.06 0.90 5.42 -3.83 -0.02 0.88 16 17 N -0.53 -7.87 4.80 -236.11 -1.13 -9.00 16 18 C 0.09 1.13 5.43 -4.98 -0.03 1.10 16 19 C -0.08 -0.93 4.12 -104.62 -0.43 -1.37 16 20 C -0.10 -1.16 9.70 -39.58 -0.38 -1.55 16 21 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 22 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 23 C -0.12 -1.31 10.05 -39.59 -0.40 -1.71 16 24 C -0.11 -1.31 7.80 -39.58 -0.31 -1.61 16 25 C 0.06 0.91 4.58 -3.83 -0.02 0.89 16 26 C -0.12 -2.32 5.31 -26.65 -0.14 -2.46 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.05 1.24 3.41 -51.93 -0.18 1.06 16 35 H 0.03 0.64 7.88 -51.93 -0.41 0.23 16 36 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 37 H 0.04 0.79 7.77 -51.93 -0.40 0.38 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.59 7.13 -51.93 -0.37 1.22 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 42 H 0.04 0.42 8.02 -51.93 -0.42 0.01 16 43 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 44 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 45 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 47 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 48 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 49 H 0.07 1.17 5.64 -51.93 -0.29 0.87 16 50 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.08 1.85 7.48 -51.93 -0.39 1.46 16 LS Contribution 395.94 15.07 5.97 5.97 Total: -1.00 -29.61 395.94 -11.63 -41.24 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -9.60 Total: 2.26 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -3.03 Total: -17.73 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.69 Total: -49.79 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.27 Total: 18.06 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.61 -11.63 -41.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256608836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.386 kcal (2) G-P(sol) polarization free energy of solvation -29.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds