Wall clock time and date at job start Tue Mar 31 2020 11:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47023 * 2 1 4 4 C 1.53004 * 109.46770 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47199 * 180.02562 * 4 3 2 6 6 C 1.36942 * 119.99707 * 269.99858 * 5 4 3 7 7 H 1.08003 * 119.99805 * 141.87437 * 6 5 4 8 8 C 1.38807 * 119.99965 * 321.87289 * 6 5 4 9 9 N 1.31619 * 119.99958 * 156.85049 * 8 6 5 10 10 Si 1.86802 * 120.00156 * 336.85657 * 8 6 5 11 11 H 1.48492 * 109.47316 * 95.39053 * 10 8 6 12 12 H 1.48501 * 109.46691 * 215.39014 * 10 8 6 13 13 H 1.48498 * 109.47148 * 335.38603 * 10 8 6 14 14 C 1.46502 * 120.00253 * 89.99688 * 5 4 3 15 15 C 1.53125 * 109.52114 * 245.12005 * 14 5 4 16 16 C 1.53037 * 109.27395 * 182.37433 * 15 14 5 17 17 N 1.46848 * 109.52382 * 59.18294 * 16 15 14 18 18 C 1.46902 * 111.00277 * 174.16142 * 17 16 15 19 19 C 1.50697 * 109.47209 * 169.99918 * 18 17 16 20 20 C 1.38233 * 120.00235 * 89.99918 * 19 18 17 21 21 C 1.38240 * 119.99744 * 179.97438 * 20 19 18 22 22 C 1.38236 * 120.00165 * 359.97438 * 21 20 19 23 23 C 1.38235 * 119.99840 * 0.07305 * 22 21 20 24 24 C 1.38230 * 120.00328 * 359.88799 * 23 22 21 25 25 C 1.46855 * 111.19340 * 298.25138 * 17 16 15 26 26 C 1.53040 * 109.52132 * 61.74544 * 25 17 16 27 27 H 1.09000 * 109.47023 * 300.00465 * 1 2 3 28 28 H 1.08998 * 109.47335 * 59.99870 * 1 2 3 29 29 H 1.08994 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46898 * 240.00070 * 2 1 3 31 31 H 1.08996 * 109.46822 * 120.00187 * 2 1 3 32 32 H 1.09001 * 109.47227 * 60.00271 * 3 2 1 33 33 H 1.08999 * 109.47080 * 299.99449 * 3 2 1 34 34 H 1.09000 * 109.47388 * 59.99466 * 4 3 2 35 35 H 1.09001 * 109.47144 * 299.99376 * 4 3 2 36 36 H 0.97003 * 120.00336 * 180.02562 * 9 8 6 37 37 H 1.09006 * 109.52131 * 5.24364 * 14 5 4 38 38 H 1.08994 * 109.50113 * 62.43616 * 15 14 5 39 39 H 1.09000 * 109.53174 * 302.33678 * 15 14 5 40 40 H 1.08992 * 109.46702 * 299.16138 * 16 15 14 41 41 H 1.09000 * 109.45353 * 179.18313 * 16 15 14 42 42 H 1.08994 * 109.47244 * 49.99031 * 18 17 16 43 43 H 1.08998 * 109.46503 * 289.99531 * 18 17 16 44 44 H 1.08002 * 119.99993 * 359.96824 * 20 19 18 45 45 H 1.07997 * 119.99726 * 179.72356 * 21 20 19 46 46 H 1.07992 * 119.99613 * 179.97438 * 22 21 20 47 47 H 1.08001 * 119.99564 * 179.97438 * 23 22 21 48 48 H 1.08000 * 120.00289 * 180.10950 * 24 23 22 49 49 H 1.09007 * 109.46273 * 181.75621 * 25 17 16 50 50 H 1.08997 * 109.46641 * 301.72484 * 25 17 16 51 51 H 1.09001 * 109.50109 * 180.87652 * 26 25 17 52 52 H 1.08999 * 109.50437 * 60.76001 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2862 3.4698 -1.1857 7 1 4.0442 4.5177 -1.2848 8 6 4.8282 2.7780 -2.2602 9 7 4.6379 3.2143 -3.4873 10 14 5.8275 1.2276 -1.9647 11 1 4.9501 0.0383 -2.1084 12 1 6.9296 1.1525 -2.9571 13 1 6.3972 1.2598 -0.5937 14 6 4.3032 3.5135 1.2690 15 6 3.3294 4.6869 1.4095 16 6 3.6288 5.4390 2.7083 17 7 5.0130 5.9286 2.6840 18 6 5.2934 6.7731 3.8528 19 6 6.7722 7.0537 3.9267 20 6 7.2982 8.1619 3.2894 21 6 8.6546 8.4195 3.3577 22 6 9.4850 7.5692 4.0637 23 6 8.9591 6.4605 4.7002 24 6 7.6026 6.2033 4.6326 25 6 5.9681 4.8164 2.5972 26 6 5.7386 4.0457 1.2951 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9286 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 5.0163 2.7307 -4.2382 37 1 4.1573 2.8181 2.0957 38 1 2.3070 4.3102 1.4345 39 1 3.4479 5.3623 0.5622 40 1 3.4961 4.7670 3.5560 41 1 2.9466 6.2837 2.8041 42 1 4.9757 6.2569 4.7587 43 1 4.7494 7.7131 3.7606 44 1 6.6494 8.8264 2.7381 45 1 9.0662 9.2828 2.8561 46 1 10.5447 7.7703 4.1167 47 1 9.6079 5.7960 5.2514 48 1 7.1915 5.3380 5.1314 49 1 6.9850 5.2088 2.6125 50 1 5.8245 4.1472 3.4455 51 1 6.4373 3.2109 1.2384 52 1 5.8956 4.7108 0.4460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256608836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:45 Heat of formation + Delta-G solvation = 22.914969 kcal Electronic energy + Delta-G solvation = -27330.977933 eV Core-core repulsion = 23908.603637 eV Total energy + Delta-G solvation = -3422.374296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.80253 -39.56792 -37.85126 -35.61384 -34.37068 -33.08861 -31.94837 -31.65374 -31.12228 -29.38121 -27.19016 -25.75958 -24.24250 -24.08921 -23.33191 -22.44131 -21.91836 -21.65661 -20.59585 -18.35319 -17.63659 -17.42438 -16.76316 -16.31962 -16.26331 -16.11544 -15.95674 -15.37998 -15.06349 -14.95156 -14.85633 -14.43135 -14.30999 -14.22530 -13.93421 -13.76924 -13.51755 -13.33962 -13.26448 -13.03478 -12.90200 -12.78241 -12.59218 -12.17914 -12.09644 -11.98992 -11.91650 -11.83603 -11.77388 -11.68010 -11.63124 -11.33551 -11.20744 -10.96063 -10.51812 -9.75819 -9.67369 -9.09213 -8.63927 -8.14071 -5.49060 0.45060 0.54943 1.28939 1.39628 1.50035 2.45262 2.78648 3.07980 3.24654 3.34682 3.80558 3.99244 4.06884 4.10080 4.13535 4.19683 4.22586 4.28908 4.32965 4.38159 4.41499 4.43879 4.48843 4.58255 4.65303 4.68516 4.74108 4.76000 4.76345 4.85223 4.89807 4.93748 4.97747 5.01426 5.06098 5.14614 5.15310 5.19912 5.22460 5.25410 5.37601 5.48083 5.55502 5.57783 5.60038 5.65100 5.66185 5.75206 6.03176 6.14298 6.21787 6.25512 6.29692 7.08833 7.73194 8.14488 9.06481 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014698 B = 0.003564 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.581434 B = 7854.818636 C = 8812.089225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.121 4.121 4 C 0.131 3.869 5 N -0.613 5.613 6 C -0.227 4.227 7 H 0.039 0.961 8 C -0.020 4.020 9 N -0.952 5.952 10 Si 0.932 3.068 11 H -0.278 1.278 12 H -0.315 1.315 13 H -0.260 1.260 14 C 0.175 3.825 15 C -0.113 4.113 16 C 0.070 3.930 17 N -0.547 5.547 18 C 0.098 3.902 19 C -0.092 4.092 20 C -0.116 4.116 21 C -0.131 4.131 22 C -0.129 4.129 23 C -0.130 4.130 24 C -0.122 4.122 25 C 0.073 3.927 26 C -0.114 4.114 27 H 0.061 0.939 28 H 0.042 0.958 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.032 0.968 34 H 0.028 0.972 35 H 0.060 0.940 36 H 0.259 0.741 37 H 0.067 0.933 38 H 0.061 0.939 39 H 0.037 0.963 40 H 0.045 0.955 41 H 0.083 0.917 42 H 0.053 0.947 43 H 0.088 0.912 44 H 0.124 0.876 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.127 0.873 49 H 0.072 0.928 50 H 0.040 0.960 51 H 0.045 0.955 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.103 3.380 20.343 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.161 4.161 4 C 0.007 3.993 5 N -0.334 5.334 6 C -0.357 4.357 7 H 0.057 0.943 8 C -0.215 4.215 9 N -0.597 5.597 10 Si 0.762 3.238 11 H -0.205 1.205 12 H -0.244 1.244 13 H -0.184 1.184 14 C 0.069 3.931 15 C -0.153 4.153 16 C -0.058 4.058 17 N -0.272 5.272 18 C -0.029 4.029 19 C -0.092 4.092 20 C -0.135 4.135 21 C -0.149 4.149 22 C -0.147 4.147 23 C -0.148 4.148 24 C -0.141 4.141 25 C -0.056 4.056 26 C -0.153 4.153 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.107 0.893 44 H 0.142 0.858 45 H 0.154 0.846 46 H 0.158 0.842 47 H 0.157 0.843 48 H 0.145 0.855 49 H 0.091 0.909 50 H 0.058 0.942 51 H 0.064 0.936 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 2.176 3.634 19.784 20.232 hybrid contribution 0.528 -0.992 -0.378 1.186 sum 2.704 2.642 19.406 19.771 Atomic orbital electron populations 1.21713 0.94703 1.02036 1.01688 1.21508 0.96904 0.96070 1.01608 1.21971 0.96691 0.96634 1.00793 1.21314 0.93753 0.85480 0.98774 1.44372 1.75434 1.11754 1.01864 1.18401 1.33833 0.95057 0.88393 0.94348 1.25972 0.99590 1.00987 0.94972 1.70008 1.47545 1.43421 0.98721 0.86011 0.79043 0.81229 0.77503 1.20506 1.24373 1.18445 1.20598 0.92774 0.92848 0.86833 1.21860 0.99003 0.97465 0.96954 1.22017 0.88925 0.98492 0.96352 1.61975 1.03255 1.21200 1.40775 1.21085 0.92081 0.98187 0.91543 1.19891 0.95625 0.95618 0.98108 1.21233 0.95967 0.97581 0.98689 1.21431 0.93583 1.00479 0.99440 1.21459 1.00747 0.94961 0.97544 1.21406 0.95253 0.98020 1.00074 1.21261 0.94153 0.99167 0.99503 1.22018 0.96439 0.91239 0.95859 1.21827 0.97842 0.98368 0.97307 0.91993 0.93851 0.91486 0.93697 0.90766 0.91762 0.94898 0.95430 0.92218 0.93249 0.91475 0.92011 0.94392 0.93647 0.89840 0.92921 0.89342 0.85836 0.84648 0.84235 0.84285 0.85501 0.90935 0.94174 0.93645 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.91 71.98 0.71 -2.85 16 2 C -0.12 -3.63 5.93 30.59 0.18 -3.45 16 3 C -0.12 -4.44 5.54 30.59 0.17 -4.27 16 4 C 0.13 5.49 4.50 86.38 0.39 5.88 16 5 N -0.61 -28.26 2.01 -677.57 -1.36 -29.63 16 6 C -0.23 -12.79 8.46 84.03 0.71 -12.07 16 7 H 0.04 2.46 7.18 -2.91 -0.02 2.44 16 8 C -0.02 -1.17 5.28 84.86 0.45 -0.72 16 9 N -0.95 -60.74 13.97 21.65 0.30 -60.44 16 10 Si 0.93 47.34 25.13 68.60 1.72 49.07 16 11 H -0.28 -13.50 6.66 99.48 0.66 -12.83 16 12 H -0.31 -16.38 7.11 99.48 0.71 -15.68 16 13 H -0.26 -12.60 7.11 99.48 0.71 -11.90 16 14 C 0.18 6.68 2.70 45.07 0.12 6.81 16 15 C -0.11 -3.98 5.45 30.65 0.17 -3.81 16 16 C 0.07 1.89 5.42 86.33 0.47 2.35 16 17 N -0.55 -15.43 4.80 -900.91 -4.32 -19.75 16 18 C 0.10 2.16 5.43 85.56 0.46 2.62 16 19 C -0.09 -2.10 4.12 -19.86 -0.08 -2.18 16 20 C -0.12 -2.65 9.70 22.27 0.22 -2.44 16 21 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 22 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 23 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 24 C -0.12 -2.54 7.80 22.27 0.17 -2.37 16 25 C 0.07 2.17 4.58 86.32 0.40 2.57 16 26 C -0.11 -4.39 5.31 30.64 0.16 -4.23 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.03 1.30 3.41 -2.39 -0.01 1.29 16 35 H 0.06 2.17 7.88 -2.39 -0.02 2.15 16 36 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 37 H 0.07 2.27 7.77 -2.38 -0.02 2.25 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.62 7.13 -2.39 -0.02 1.60 16 40 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 42 H 0.05 1.02 8.02 -2.39 -0.02 1.00 16 43 H 0.09 1.81 8.09 -2.39 -0.02 1.79 16 44 H 0.12 2.70 8.06 -2.91 -0.02 2.67 16 45 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 47 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 48 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 49 H 0.07 2.20 5.64 -2.38 -0.01 2.19 16 50 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 52 H 0.04 1.92 7.48 -2.39 -0.02 1.91 16 Total: -1.00 -67.47 395.94 2.51 -64.96 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.80 Total: 20.81 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 5.37 Total: -25.01 kcal Atomic # 7 Polarization: -104.43 SS G_CDS: -5.38 Total: -109.82 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.72 Total: 49.07 kcal Total: -67.47 2.51 -64.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256608836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.871 kcal (2) G-P(sol) polarization free energy of solvation -67.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds