Wall clock time and date at job start Tue Mar 31 2020 11:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46971 * 2 1 4 4 N 1.46901 * 109.47393 * 240.00224 * 2 1 3 5 5 C 1.46851 * 110.99918 * 55.78546 * 4 2 1 6 6 C 1.53038 * 109.52200 * 185.84343 * 5 4 2 7 7 C 1.53120 * 109.27528 * 300.82241 * 6 5 4 8 8 N 1.46897 * 109.57479 * 177.59537 * 7 6 5 9 9 C 1.46899 * 111.00118 * 184.24003 * 8 7 6 10 10 C 1.50697 * 109.46933 * 298.40231 * 9 8 7 11 11 H 1.08003 * 120.00155 * 354.78515 * 10 9 8 12 12 C 1.37884 * 120.00146 * 174.78784 * 10 9 8 13 13 N 1.31511 * 119.99592 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99950 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47282 * 359.97438 * 14 12 10 16 16 H 1.48510 * 109.47119 * 119.99834 * 14 12 10 17 17 H 1.48502 * 109.47008 * 239.99313 * 14 12 10 18 18 C 1.46900 * 111.00416 * 60.27993 * 8 7 6 19 19 C 1.50697 * 109.47460 * 192.55501 * 18 8 7 20 20 C 1.38238 * 119.99578 * 263.92539 * 19 18 8 21 21 C 1.38241 * 119.99765 * 179.76648 * 20 19 18 22 22 C 1.38239 * 119.99703 * 0.50201 * 21 20 19 23 23 C 1.38231 * 120.00044 * 359.74854 * 22 21 20 24 24 C 1.38230 * 120.00102 * 84.19445 * 19 18 8 25 25 C 1.53122 * 109.16534 * 57.65394 * 7 6 5 26 26 C 1.46842 * 110.99991 * 179.97438 * 4 2 1 27 27 H 1.09000 * 109.47323 * 60.00202 * 1 2 3 28 28 H 1.09001 * 109.47365 * 299.99902 * 1 2 3 29 29 H 1.09003 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47323 * 119.99798 * 2 1 3 31 31 H 1.09001 * 109.46996 * 59.99872 * 3 2 1 32 32 H 1.08998 * 109.47096 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46932 * 300.00038 * 3 2 1 34 34 H 1.09003 * 109.46206 * 305.85908 * 5 4 2 35 35 H 1.08997 * 109.45842 * 65.82602 * 5 4 2 36 36 H 1.08994 * 109.50314 * 180.88214 * 6 5 4 37 37 H 1.08998 * 109.50372 * 60.76208 * 6 5 4 38 38 H 1.09009 * 109.52165 * 297.74939 * 7 6 5 39 39 H 1.08995 * 109.47245 * 58.40639 * 9 8 7 40 40 H 1.09005 * 109.46961 * 178.40459 * 9 8 7 41 41 H 0.97007 * 120.00018 * 180.02562 * 13 12 10 42 42 H 1.08997 * 109.47182 * 312.55606 * 18 8 7 43 43 H 1.09002 * 109.46657 * 72.55415 * 18 8 7 44 44 H 1.08000 * 120.00573 * 359.97438 * 20 19 18 45 45 H 1.07997 * 120.00062 * 180.22720 * 21 20 19 46 46 H 1.08000 * 119.99483 * 179.72396 * 22 21 20 47 47 H 1.08005 * 120.00000 * 179.97438 * 23 22 21 48 48 H 1.07997 * 119.99950 * 359.97438 * 24 19 18 49 49 H 1.08996 * 109.50541 * 182.40396 * 25 7 6 50 50 H 1.09004 * 109.49838 * 62.28214 * 25 7 6 51 51 H 1.08998 * 109.46065 * 294.17112 * 26 4 2 52 52 H 1.08994 * 109.46653 * 54.15310 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 1.4684 -0.0871 -2.4185 6 6 1.8811 -0.9196 -3.6346 7 6 3.4092 -0.9736 -3.7151 8 7 3.8128 -1.8187 -4.8468 9 6 5.2728 -1.9741 -4.8934 10 6 5.9157 -0.6249 -5.0864 11 1 5.3009 0.2478 -5.2507 12 6 7.2889 -0.5043 -5.0532 13 7 8.0375 -1.5668 -4.8527 14 14 8.0856 1.1683 -5.2917 15 1 7.0317 2.1938 -5.4976 16 1 8.8836 1.5127 -4.0875 17 1 8.9753 1.1278 -6.4801 18 6 3.2999 -1.2816 -6.1143 19 6 3.4612 -2.3147 -7.1996 20 6 4.5627 -2.2744 -8.0338 21 6 4.7131 -3.2249 -9.0263 22 6 3.7568 -4.2094 -9.1911 23 6 2.6527 -4.2465 -8.3602 24 6 2.5049 -3.2991 -7.3644 25 6 3.9607 -1.5630 -2.4140 26 6 3.4876 -0.7115 -1.2336 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 0.3809 -0.0586 -2.3500 35 1 1.8521 0.9274 -2.5257 36 1 1.4848 -0.4614 -4.5407 37 1 1.4860 -1.9305 -3.5346 38 1 3.8024 0.0336 -3.8542 39 1 5.6216 -2.4124 -3.9584 40 1 5.5424 -2.6271 -5.7235 41 1 9.0035 -1.4820 -4.8290 42 1 2.2444 -1.0333 -6.0030 43 1 3.8581 -0.3842 -6.3810 44 1 5.3075 -1.5024 -7.9081 45 1 5.5755 -3.1956 -9.6757 46 1 3.8721 -4.9492 -9.9694 47 1 1.9053 -5.0154 -8.4892 48 1 1.6423 -3.3281 -6.7151 49 1 5.0501 -1.5645 -2.4481 50 1 3.5983 -2.5841 -2.2948 51 1 3.8615 0.3062 -1.3467 52 1 3.8671 -1.1366 -0.3045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257212933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:05 Heat of formation + Delta-G solvation = 29.313007 kcal Electronic energy + Delta-G solvation = -27868.513849 eV Core-core repulsion = 24446.416993 eV Total energy + Delta-G solvation = -3422.096856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.53892 -38.69891 -36.80234 -33.70782 -32.51972 -30.93787 -30.67991 -30.32238 -28.84202 -27.31597 -26.80577 -24.82990 -23.71486 -22.28455 -21.99081 -21.59582 -20.32700 -19.44326 -18.74775 -16.52690 -16.21693 -15.97556 -15.02405 -14.95926 -14.60688 -14.46746 -14.44533 -14.30687 -13.93837 -13.64752 -13.42273 -13.09018 -12.88402 -12.63764 -12.34537 -12.30266 -12.09609 -11.87732 -11.79215 -11.62593 -11.36048 -11.12328 -11.09893 -10.91738 -10.89397 -10.66604 -10.56166 -10.46616 -10.28379 -10.18341 -9.91266 -9.85106 -9.68221 -9.31691 -8.44797 -8.31537 -8.14457 -8.03169 -7.11510 -6.02297 -4.11006 1.91715 1.97377 3.23103 3.32412 3.34547 4.08842 4.31094 4.38657 4.85720 4.99421 5.12723 5.20183 5.26486 5.29420 5.38475 5.38972 5.41498 5.51650 5.54172 5.60990 5.63194 5.72033 5.75856 5.80963 5.84966 5.88021 5.97116 6.02436 6.08093 6.11551 6.19190 6.22643 6.24448 6.32983 6.35454 6.40552 6.51135 6.57697 6.63328 6.70390 6.92541 6.97055 7.03011 7.07485 7.32233 7.34117 7.37741 7.40081 7.57672 7.59406 7.93495 8.10754 8.31511 8.34853 9.00200 9.55061 11.01923 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009887 B = 0.004867 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.257015 B = 5752.167844 C = 7975.873161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.075 3.925 3 C -0.188 4.188 4 N -0.530 5.530 5 C 0.054 3.946 6 C -0.112 4.112 7 C 0.098 3.902 8 N -0.529 5.529 9 C 0.183 3.817 10 C -0.543 4.543 11 H 0.054 0.946 12 C 0.068 3.932 13 N -0.887 5.887 14 Si 0.880 3.120 15 H -0.275 1.275 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.090 3.910 19 C -0.055 4.055 20 C -0.095 4.095 21 C -0.127 4.127 22 C -0.133 4.133 23 C -0.133 4.133 24 C -0.106 4.106 25 C -0.104 4.104 26 C 0.058 3.942 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.030 0.970 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.038 0.962 40 H 0.032 0.968 41 H 0.261 0.739 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.128 0.872 45 H 0.114 0.886 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.115 0.885 49 H 0.082 0.918 50 H 0.067 0.933 51 H 0.034 0.966 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.167 0.952 2.681 13.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 C -0.247 4.247 4 N -0.254 5.254 5 C -0.074 4.074 6 C -0.151 4.151 7 C -0.011 4.011 8 N -0.253 5.253 9 C 0.057 3.943 10 C -0.582 4.582 11 H 0.072 0.928 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.708 3.292 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.038 4.038 19 C -0.056 4.056 20 C -0.113 4.113 21 C -0.145 4.145 22 C -0.151 4.151 23 C -0.151 4.151 24 C -0.124 4.124 25 C -0.142 4.142 26 C -0.070 4.070 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.146 0.854 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.133 0.867 49 H 0.100 0.900 50 H 0.086 0.914 51 H 0.052 0.948 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.341 -0.066 2.796 13.631 hybrid contribution 1.469 2.607 -0.277 3.005 sum -11.872 2.540 2.519 12.400 Atomic orbital electron populations 1.21904 0.94741 1.02296 1.01384 1.21681 0.95377 0.92265 0.94038 1.22498 1.01911 0.98372 1.01923 1.62246 1.08701 1.52987 1.01470 1.22141 0.99251 0.95961 0.90054 1.21748 0.96882 1.00712 0.95713 1.21349 0.92625 0.95733 0.91386 1.62586 1.15779 1.46740 1.00153 1.19839 0.80380 0.95836 0.98237 1.21716 0.91730 0.94962 1.49775 0.92779 1.24902 0.97429 0.95972 0.95162 1.69954 1.04974 1.28243 1.49412 0.86729 0.79584 0.85010 0.77844 1.19991 1.21037 1.20994 1.20986 0.98929 0.94620 0.89251 1.19844 0.93969 0.96389 0.95366 1.21286 0.97020 0.98945 0.94053 1.21090 0.98809 0.95705 0.98900 1.20986 0.95216 0.98935 0.99988 1.20990 0.98187 0.99190 0.96723 1.20946 0.99292 0.94749 0.97436 1.21600 1.01501 0.99042 0.92045 1.22120 0.86469 0.98972 0.99425 0.92498 0.92669 0.91877 0.90272 0.92525 0.92230 0.92509 0.90937 0.95192 0.92237 0.90861 0.94149 0.94413 0.94992 0.92958 0.91859 0.93177 0.85419 0.86820 0.87110 0.87012 0.86654 0.89957 0.91427 0.94817 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.84 37.16 0.33 -1.09 16 2 C 0.08 0.86 3.03 -67.71 -0.20 0.66 16 3 C -0.19 -2.08 8.51 37.16 0.32 -1.77 16 4 N -0.53 -7.33 4.68 -226.69 -1.06 -8.39 16 5 C 0.05 0.74 4.67 -3.83 -0.02 0.72 16 6 C -0.11 -1.73 5.12 -26.65 -0.14 -1.86 16 7 C 0.10 1.82 1.64 -67.59 -0.11 1.71 16 8 N -0.53 -10.81 4.55 -229.37 -1.04 -11.85 16 9 C 0.18 4.48 4.44 -4.98 -0.02 4.45 16 10 C -0.54 -14.08 7.52 -34.44 -0.26 -14.34 16 11 H 0.05 1.42 5.88 -52.48 -0.31 1.11 16 12 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 13 N -0.89 -25.30 13.29 55.43 0.74 -24.57 16 14 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 C 0.09 1.70 4.77 -4.98 -0.02 1.67 16 19 C -0.06 -1.02 4.79 -104.63 -0.50 -1.52 16 20 C -0.09 -1.80 8.41 -39.58 -0.33 -2.13 16 21 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 22 C -0.13 -2.01 10.05 -39.58 -0.40 -2.41 16 23 C -0.13 -2.00 10.05 -39.58 -0.40 -2.39 16 24 C -0.11 -1.74 9.73 -39.58 -0.38 -2.12 16 25 C -0.10 -1.90 4.93 -26.65 -0.13 -2.03 16 26 C 0.06 0.90 4.89 -3.83 -0.02 0.88 16 27 H 0.06 0.55 6.22 -51.93 -0.32 0.23 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.72 6.53 -51.93 -0.34 0.38 16 33 H 0.06 0.65 6.63 -51.93 -0.34 0.31 16 34 H 0.07 0.88 5.90 -51.93 -0.31 0.57 16 35 H 0.03 0.43 6.71 -51.93 -0.35 0.08 16 36 H 0.06 0.87 6.30 -51.93 -0.33 0.54 16 37 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.04 0.85 6.81 -51.92 -0.35 0.50 16 39 H 0.04 1.01 6.20 -51.93 -0.32 0.69 16 40 H 0.03 0.86 6.40 -51.93 -0.33 0.53 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.06 1.06 5.78 -51.93 -0.30 0.76 16 43 H 0.05 1.05 6.20 -51.93 -0.32 0.72 16 44 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 45 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 46 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 47 H 0.11 1.38 8.06 -52.48 -0.42 0.95 16 48 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 49 H 0.08 1.74 6.46 -51.93 -0.34 1.41 16 50 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 51 H 0.03 0.54 6.63 -51.93 -0.34 0.20 16 52 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 LS Contribution 384.49 15.07 5.79 5.79 Total: -1.00 -27.61 384.49 -12.20 -39.82 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -8.81 Total: 5.67 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -2.79 Total: -22.37 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -1.37 Total: -44.81 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.61 -12.20 -39.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257212933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.128 kcal (2) G-P(sol) polarization free energy of solvation -27.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds