Wall clock time and date at job start Tue Mar 31 2020 11:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46971 * 2 1 4 4 N 1.46901 * 109.47393 * 240.00224 * 2 1 3 5 5 C 1.46851 * 110.99918 * 55.78546 * 4 2 1 6 6 C 1.53038 * 109.52200 * 185.84343 * 5 4 2 7 7 C 1.53120 * 109.27528 * 300.82241 * 6 5 4 8 8 N 1.46897 * 109.57479 * 177.59537 * 7 6 5 9 9 C 1.46899 * 111.00118 * 184.24003 * 8 7 6 10 10 C 1.50697 * 109.46933 * 298.40231 * 9 8 7 11 11 H 1.08003 * 120.00155 * 354.78515 * 10 9 8 12 12 C 1.37884 * 120.00146 * 174.78784 * 10 9 8 13 13 N 1.31511 * 119.99592 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 119.99950 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47282 * 359.97438 * 14 12 10 16 16 H 1.48510 * 109.47119 * 119.99834 * 14 12 10 17 17 H 1.48502 * 109.47008 * 239.99313 * 14 12 10 18 18 C 1.46900 * 111.00416 * 60.27993 * 8 7 6 19 19 C 1.50697 * 109.47460 * 192.55501 * 18 8 7 20 20 C 1.38238 * 119.99578 * 263.92539 * 19 18 8 21 21 C 1.38241 * 119.99765 * 179.76648 * 20 19 18 22 22 C 1.38239 * 119.99703 * 0.50201 * 21 20 19 23 23 C 1.38231 * 120.00044 * 359.74854 * 22 21 20 24 24 C 1.38230 * 120.00102 * 84.19445 * 19 18 8 25 25 C 1.53122 * 109.16534 * 57.65394 * 7 6 5 26 26 C 1.46842 * 110.99991 * 179.97438 * 4 2 1 27 27 H 1.09000 * 109.47323 * 60.00202 * 1 2 3 28 28 H 1.09001 * 109.47365 * 299.99902 * 1 2 3 29 29 H 1.09003 * 109.46893 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47323 * 119.99798 * 2 1 3 31 31 H 1.09001 * 109.46996 * 59.99872 * 3 2 1 32 32 H 1.08998 * 109.47096 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46932 * 300.00038 * 3 2 1 34 34 H 1.09003 * 109.46206 * 305.85908 * 5 4 2 35 35 H 1.08997 * 109.45842 * 65.82602 * 5 4 2 36 36 H 1.08994 * 109.50314 * 180.88214 * 6 5 4 37 37 H 1.08998 * 109.50372 * 60.76208 * 6 5 4 38 38 H 1.09009 * 109.52165 * 297.74939 * 7 6 5 39 39 H 1.08995 * 109.47245 * 58.40639 * 9 8 7 40 40 H 1.09005 * 109.46961 * 178.40459 * 9 8 7 41 41 H 0.97007 * 120.00018 * 180.02562 * 13 12 10 42 42 H 1.08997 * 109.47182 * 312.55606 * 18 8 7 43 43 H 1.09002 * 109.46657 * 72.55415 * 18 8 7 44 44 H 1.08000 * 120.00573 * 359.97438 * 20 19 18 45 45 H 1.07997 * 120.00062 * 180.22720 * 21 20 19 46 46 H 1.08000 * 119.99483 * 179.72396 * 22 21 20 47 47 H 1.08005 * 120.00000 * 179.97438 * 23 22 21 48 48 H 1.07997 * 119.99950 * 359.97438 * 24 19 18 49 49 H 1.08996 * 109.50541 * 182.40396 * 25 7 6 50 50 H 1.09004 * 109.49838 * 62.28214 * 25 7 6 51 51 H 1.08998 * 109.46065 * 294.17112 * 26 4 2 52 52 H 1.08994 * 109.46653 * 54.15310 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 1.4684 -0.0871 -2.4185 6 6 1.8811 -0.9196 -3.6346 7 6 3.4092 -0.9736 -3.7151 8 7 3.8128 -1.8187 -4.8468 9 6 5.2728 -1.9741 -4.8934 10 6 5.9157 -0.6249 -5.0864 11 1 5.3009 0.2478 -5.2507 12 6 7.2889 -0.5043 -5.0532 13 7 8.0375 -1.5668 -4.8527 14 14 8.0856 1.1683 -5.2917 15 1 7.0317 2.1938 -5.4976 16 1 8.8836 1.5127 -4.0875 17 1 8.9753 1.1278 -6.4801 18 6 3.2999 -1.2816 -6.1143 19 6 3.4612 -2.3147 -7.1996 20 6 4.5627 -2.2744 -8.0338 21 6 4.7131 -3.2249 -9.0263 22 6 3.7568 -4.2094 -9.1911 23 6 2.6527 -4.2465 -8.3602 24 6 2.5049 -3.2991 -7.3644 25 6 3.9607 -1.5630 -2.4140 26 6 3.4876 -0.7115 -1.2336 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 0.3809 -0.0586 -2.3500 35 1 1.8521 0.9274 -2.5257 36 1 1.4848 -0.4614 -4.5407 37 1 1.4860 -1.9305 -3.5346 38 1 3.8024 0.0336 -3.8542 39 1 5.6216 -2.4124 -3.9584 40 1 5.5424 -2.6271 -5.7235 41 1 9.0035 -1.4820 -4.8290 42 1 2.2444 -1.0333 -6.0030 43 1 3.8581 -0.3842 -6.3810 44 1 5.3075 -1.5024 -7.9081 45 1 5.5755 -3.1956 -9.6757 46 1 3.8721 -4.9492 -9.9694 47 1 1.9053 -5.0154 -8.4892 48 1 1.6423 -3.3281 -6.7151 49 1 5.0501 -1.5645 -2.4481 50 1 3.5983 -2.5841 -2.2948 51 1 3.8615 0.3062 -1.3467 52 1 3.8671 -1.1366 -0.3045 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257212933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:04 Heat of formation + Delta-G solvation = 14.186238 kcal Electronic energy + Delta-G solvation = -27869.169795 eV Core-core repulsion = 24446.416993 eV Total energy + Delta-G solvation = -3422.752802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87415 -39.97240 -38.23944 -35.15104 -34.37889 -32.32202 -31.96957 -31.62509 -30.21971 -28.70654 -28.05718 -26.43260 -25.23980 -23.65039 -23.30899 -23.04318 -21.63687 -20.88287 -20.10407 -18.38742 -17.56061 -17.31664 -16.74247 -16.30202 -16.02917 -15.95025 -15.73437 -15.50175 -15.22012 -15.04911 -14.78365 -14.48421 -14.15306 -14.06948 -13.83575 -13.55948 -13.40041 -13.20836 -13.04721 -12.91998 -12.82611 -12.70130 -12.55563 -12.29746 -12.21722 -12.12694 -11.98974 -11.82114 -11.75721 -11.68608 -11.55965 -11.53148 -11.18972 -10.84269 -10.56490 -9.65684 -9.49974 -9.15709 -8.92914 -8.11632 -6.29269 0.59995 0.65360 1.29822 1.32645 1.42047 2.35100 2.94836 3.00120 3.12593 3.50077 3.89818 3.99635 4.04433 4.10093 4.11776 4.20134 4.29291 4.37211 4.38274 4.41573 4.45190 4.47946 4.56427 4.72039 4.72773 4.73847 4.80831 4.82719 4.84764 4.89448 4.92389 4.97599 5.03814 5.06999 5.12151 5.23997 5.26548 5.31509 5.32461 5.36397 5.40108 5.44021 5.45061 5.56075 5.70569 5.74245 5.81688 5.92928 6.12961 6.20573 6.27715 6.30475 6.34366 6.63023 6.92379 7.40346 8.89690 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009887 B = 0.004867 C = 0.003510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.257015 B = 5752.167844 C = 7975.873161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.072 3.928 3 C -0.184 4.184 4 N -0.534 5.534 5 C 0.058 3.942 6 C -0.101 4.101 7 C 0.099 3.901 8 N -0.526 5.526 9 C 0.204 3.796 10 C -0.537 4.537 11 H 0.048 0.952 12 C 0.019 3.981 13 N -0.922 5.922 14 Si 0.942 3.058 15 H -0.271 1.271 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.096 3.904 19 C -0.076 4.076 20 C -0.123 4.123 21 C -0.137 4.137 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.109 4.109 25 C -0.096 4.096 26 C 0.069 3.931 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.024 0.976 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.012 0.988 39 H 0.009 0.991 40 H 0.004 0.996 41 H 0.262 0.738 42 H 0.090 0.910 43 H 0.022 0.978 44 H 0.093 0.907 45 H 0.125 0.875 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.134 0.866 49 H 0.042 0.958 50 H 0.063 0.937 51 H 0.024 0.976 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.016 0.850 2.760 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 C -0.243 4.243 4 N -0.258 5.258 5 C -0.070 4.070 6 C -0.139 4.139 7 C -0.009 4.009 8 N -0.249 5.249 9 C 0.078 3.922 10 C -0.577 4.577 11 H 0.066 0.934 12 C -0.181 4.181 13 N -0.563 5.563 14 Si 0.768 3.232 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.205 1.205 18 C -0.032 4.032 19 C -0.077 4.077 20 C -0.141 4.141 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.144 4.144 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.060 4.060 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.043 0.957 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.030 0.970 39 H 0.027 0.973 40 H 0.022 0.978 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.040 0.960 44 H 0.112 0.888 45 H 0.143 0.857 46 H 0.163 0.837 47 H 0.167 0.833 48 H 0.152 0.848 49 H 0.061 0.939 50 H 0.081 0.919 51 H 0.042 0.958 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.213 -0.155 2.878 16.467 hybrid contribution 2.315 2.579 -0.322 3.480 sum -13.898 2.424 2.556 14.338 Atomic orbital electron populations 1.21866 0.92892 1.02553 1.02445 1.21806 0.96770 0.92162 0.92818 1.22455 1.00882 0.98298 1.02668 1.62236 1.07107 1.53856 1.02617 1.22140 1.00668 0.95063 0.89104 1.21656 0.93561 1.01337 0.97388 1.21405 0.95261 0.93602 0.90656 1.62543 1.12963 1.47648 1.01707 1.19373 0.83082 0.94417 0.95343 1.21848 0.91870 0.95299 1.48634 0.93386 1.25624 0.98091 0.99241 0.95123 1.70068 1.05188 1.30217 1.50785 0.85759 0.78629 0.81012 0.77828 1.19543 1.20558 1.20547 1.20973 0.99714 0.93845 0.88621 1.19867 0.94876 0.97497 0.95442 1.21165 0.97168 0.99623 0.96192 1.21307 1.00005 0.95729 0.98499 1.21391 0.94292 0.98502 1.00428 1.21436 0.98612 0.99043 0.95311 1.21179 0.99125 0.94279 0.98192 1.21454 0.98998 0.99489 0.93524 1.21928 0.88077 0.97698 0.98280 0.92277 0.90802 0.91987 0.89883 0.90578 0.93794 0.92935 0.88294 0.95729 0.91109 0.90757 0.97034 0.97272 0.97792 0.92901 0.89176 0.96014 0.88833 0.85690 0.83661 0.83298 0.84836 0.93935 0.91869 0.95786 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.84 71.98 0.64 -1.64 16 2 C 0.07 1.50 3.03 44.92 0.14 1.63 16 3 C -0.18 -3.74 8.51 71.98 0.61 -3.13 16 4 N -0.53 -14.02 4.68 -871.11 -4.08 -18.10 16 5 C 0.06 1.48 4.67 86.33 0.40 1.89 16 6 C -0.10 -3.00 5.12 30.65 0.16 -2.85 16 7 C 0.10 3.82 1.64 45.00 0.07 3.89 16 8 N -0.53 -22.41 4.55 -879.60 -4.00 -26.41 16 9 C 0.20 10.72 4.44 85.56 0.38 11.10 16 10 C -0.54 -29.55 7.52 25.60 0.19 -29.36 16 11 H 0.05 2.66 5.88 -2.91 -0.02 2.64 16 12 C 0.02 1.04 5.46 84.66 0.46 1.51 16 13 N -0.92 -55.08 13.29 21.45 0.28 -54.80 16 14 Si 0.94 44.50 29.54 68.60 2.03 46.53 16 15 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 16 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 17 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 18 C 0.10 3.74 4.77 85.56 0.41 4.15 16 19 C -0.08 -2.87 4.79 -19.87 -0.10 -2.97 16 20 C -0.12 -4.91 8.41 22.27 0.19 -4.72 16 21 C -0.14 -4.62 10.05 22.27 0.22 -4.40 16 22 C -0.13 -3.57 10.05 22.27 0.22 -3.34 16 23 C -0.13 -3.40 10.05 22.27 0.22 -3.18 16 24 C -0.11 -3.42 9.73 22.27 0.22 -3.20 16 25 C -0.10 -3.69 4.93 30.65 0.15 -3.54 16 26 C 0.07 2.14 4.89 86.33 0.42 2.56 16 27 H 0.06 0.94 6.22 -2.39 -0.01 0.92 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.04 1.02 6.53 -2.39 -0.02 1.01 16 33 H 0.05 1.11 6.63 -2.39 -0.02 1.09 16 34 H 0.10 2.06 5.90 -2.39 -0.01 2.05 16 35 H 0.02 0.67 6.71 -2.39 -0.02 0.65 16 36 H 0.07 1.94 6.30 -2.39 -0.02 1.92 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.01 0.51 6.81 -2.38 -0.02 0.50 16 39 H 0.01 0.53 6.20 -2.39 -0.01 0.52 16 40 H 0.00 0.23 6.40 -2.38 -0.02 0.22 16 41 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 42 H 0.09 2.97 5.78 -2.39 -0.01 2.96 16 43 H 0.02 0.96 6.20 -2.39 -0.01 0.95 16 44 H 0.09 4.26 8.06 -2.91 -0.02 4.24 16 45 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 46 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 47 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 48 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 49 H 0.04 1.94 6.46 -2.39 -0.02 1.93 16 50 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 51 H 0.02 0.79 6.63 -2.39 -0.02 0.78 16 52 H 0.08 2.26 8.12 -2.39 -0.02 2.24 16 Total: -1.00 -63.46 384.49 0.13 -63.33 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.88 Total: 25.05 kcal Atomic # 6 Polarization: -40.61 SS G_CDS: 5.01 Total: -35.60 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -7.80 Total: -99.31 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -63.46 0.13 -63.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257212933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.517 kcal (2) G-P(sol) polarization free energy of solvation -63.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds