Wall clock time and date at job start Tue Mar 31 2020 11:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47318 * 2 1 4 4 C 1.53000 * 109.47142 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46963 * 185.40488 * 4 3 2 6 6 C 1.46902 * 110.99760 * 160.06794 * 5 4 3 7 7 C 1.50708 * 109.47055 * 288.59927 * 6 5 4 8 8 H 1.07999 * 120.00091 * 355.30886 * 7 6 5 9 9 C 1.37874 * 120.00250 * 175.30463 * 7 6 5 10 10 N 1.31520 * 119.99964 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00343 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46996 * 90.00120 * 11 9 7 13 13 H 1.48499 * 109.47323 * 210.00307 * 11 9 7 14 14 H 1.48503 * 109.46939 * 329.99963 * 11 9 7 15 15 C 1.46901 * 111.00104 * 284.01527 * 5 4 3 16 16 C 1.53115 * 109.52160 * 175.00214 * 15 5 4 17 17 C 1.53036 * 109.27790 * 177.56598 * 16 15 5 18 18 N 1.46852 * 109.52014 * 300.81913 * 17 16 15 19 19 C 1.39676 * 110.99834 * 185.84036 * 18 17 16 20 20 C 1.38918 * 120.07197 * 180.02562 * 19 18 17 21 21 C 1.38108 * 119.92319 * 180.02562 * 20 19 18 22 22 C 1.38282 * 120.07208 * 0.26846 * 21 20 19 23 23 C 1.38290 * 120.15492 * 359.45263 * 22 21 20 24 24 C 1.38104 * 120.06888 * 0.54917 * 23 22 21 25 25 C 1.46843 * 111.19827 * 61.74399 * 18 17 16 26 26 C 1.53041 * 109.52415 * 298.25772 * 25 18 17 27 27 H 1.09005 * 109.47273 * 299.99795 * 1 2 3 28 28 H 1.09004 * 109.47379 * 59.99164 * 1 2 3 29 29 H 1.09000 * 109.47749 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46785 * 240.00026 * 2 1 3 31 31 H 1.08995 * 109.47418 * 120.00673 * 2 1 3 32 32 H 1.08995 * 109.46814 * 60.00019 * 3 2 1 33 33 H 1.08997 * 109.47242 * 300.00156 * 3 2 1 34 34 H 1.08994 * 109.47126 * 65.40012 * 4 3 2 35 35 H 1.09002 * 109.47100 * 305.40216 * 4 3 2 36 36 H 1.08992 * 109.47734 * 48.60160 * 6 5 4 37 37 H 1.09004 * 109.47206 * 168.60710 * 6 5 4 38 38 H 0.96999 * 120.00009 * 179.97438 * 10 9 7 39 39 H 1.09002 * 109.51362 * 54.87926 * 15 5 4 40 40 H 1.08998 * 109.50798 * 57.62244 * 16 15 5 41 41 H 1.09000 * 109.53828 * 297.52044 * 16 15 5 42 42 H 1.09000 * 109.46494 * 180.80914 * 17 16 15 43 43 H 1.08997 * 109.45686 * 60.82440 * 17 16 15 44 44 H 1.07999 * 120.03274 * 0.04113 * 20 19 18 45 45 H 1.08001 * 119.96160 * 179.97438 * 21 20 19 46 46 H 1.08007 * 119.92354 * 179.70385 * 22 21 20 47 47 H 1.07996 * 119.96389 * 180.25444 * 23 22 21 48 48 H 1.08002 * 120.03399 * 179.70305 * 24 23 22 49 49 H 1.09001 * 109.46349 * 58.26958 * 25 18 17 50 50 H 1.09002 * 109.46340 * 178.24049 * 25 18 17 51 51 H 1.09004 * 109.49894 * 299.24051 * 26 25 18 52 52 H 1.09002 * 109.50549 * 179.12241 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8212 0.1298 6 6 5.4510 2.8433 0.6010 7 6 5.4973 2.4308 2.0497 8 1 4.5794 2.2510 2.5896 9 6 6.7115 2.2829 2.6859 10 7 7.8293 2.5023 2.0286 11 14 6.7690 1.7709 4.4815 12 1 6.8220 0.2896 4.5723 13 1 7.9768 2.3497 5.1229 14 1 5.5538 2.2663 5.1766 15 6 3.9215 3.5511 -1.1375 16 6 4.3237 5.0141 -0.9319 17 6 4.2360 5.7549 -2.2681 18 7 5.1288 5.1155 -3.2431 19 6 5.1734 5.8441 -4.4340 20 6 5.9633 5.4056 -5.4892 21 6 6.0055 6.1287 -6.6651 22 6 5.2669 7.2909 -6.7907 23 6 4.4750 7.7273 -5.7443 24 6 4.4282 7.0090 -4.5657 25 6 4.7332 3.7235 -3.4924 26 6 4.8356 2.9221 -2.1926 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9329 1.0148 -0.9352 35 1 3.9337 0.8470 0.8368 36 1 6.0469 2.1507 0.0068 37 1 5.8538 3.8509 0.4971 38 1 8.6836 2.3986 2.4763 39 1 2.8863 3.5019 -1.4750 40 1 5.3458 5.0613 -0.5561 41 1 3.6498 5.4798 -0.2128 42 1 4.5355 6.7935 -2.1280 43 1 3.2108 5.7190 -2.6365 44 1 6.5436 4.5001 -5.3901 45 1 6.6198 5.7886 -7.4857 46 1 5.3054 7.8571 -7.7097 47 1 3.8962 8.6332 -5.8473 48 1 3.8133 7.3529 -3.7471 49 1 3.7056 3.6974 -3.8550 50 1 5.3937 3.2867 -4.2414 51 1 5.8658 2.9363 -1.8366 52 1 4.5270 1.8926 -2.3745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258512166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:03 Heat of formation + Delta-G solvation = 25.109360 kcal Electronic energy + Delta-G solvation = -27159.714785 eV Core-core repulsion = 23737.435645 eV Total energy + Delta-G solvation = -3422.279140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.36957 -38.48704 -36.52979 -34.48789 -32.80627 -31.66763 -31.48700 -30.29252 -28.85003 -28.35289 -26.18726 -24.17942 -23.49818 -22.87416 -21.86762 -21.45992 -20.74957 -20.26233 -18.52067 -17.67473 -16.40553 -15.84640 -15.46801 -15.26076 -14.84959 -14.68942 -14.40813 -14.16859 -13.95288 -13.82546 -13.65061 -13.48533 -13.28590 -12.74757 -12.64556 -12.47970 -12.22276 -12.01649 -11.93879 -11.64825 -11.45904 -11.23359 -11.09403 -10.95578 -10.90091 -10.76047 -10.68337 -10.51195 -10.35171 -10.14013 -10.04273 -9.96764 -9.64370 -9.42168 -9.12534 -8.97321 -8.37244 -7.75320 -7.14872 -5.98490 -3.99333 1.36599 1.38331 3.33058 3.39738 3.43891 3.63839 3.93569 4.44365 4.71279 4.84190 4.91130 5.01910 5.10348 5.15685 5.19462 5.26200 5.35465 5.36180 5.38618 5.41026 5.42562 5.49072 5.59190 5.67287 5.68180 5.78955 5.85026 5.90725 5.94359 5.96853 6.03361 6.09685 6.13643 6.15892 6.21581 6.31979 6.38304 6.40521 6.42592 6.49811 6.51674 6.65435 6.77004 6.77259 6.83305 6.90037 7.13328 7.35570 7.38158 7.45328 7.87013 8.17922 8.25796 8.61155 9.09418 9.64574 11.11619 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.003543 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.191573 B = 7900.400222 C = 9685.834574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.111 4.111 4 C 0.059 3.941 5 N -0.529 5.529 6 C 0.190 3.810 7 C -0.505 4.505 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.898 5.898 11 Si 0.894 3.106 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.273 1.273 15 C 0.088 3.912 16 C -0.113 4.113 17 C 0.056 3.944 18 N -0.487 5.487 19 C 0.123 3.877 20 C -0.145 4.145 21 C -0.096 4.096 22 C -0.157 4.157 23 C -0.094 4.094 24 C -0.176 4.176 25 C 0.069 3.931 26 C -0.155 4.155 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.022 0.978 35 H 0.082 0.918 36 H -0.004 1.004 37 H 0.034 0.966 38 H 0.260 0.740 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.041 0.959 44 H 0.124 0.876 45 H 0.120 0.880 46 H 0.116 0.884 47 H 0.118 0.882 48 H 0.127 0.873 49 H 0.038 0.962 50 H 0.075 0.925 51 H 0.083 0.917 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.594 4.384 -15.030 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.149 4.149 4 C -0.070 4.070 5 N -0.252 5.252 6 C 0.065 3.935 7 C -0.544 4.544 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.537 5.537 11 Si 0.722 3.278 12 H -0.209 1.209 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.022 4.022 16 C -0.151 4.151 17 C -0.071 4.071 18 N -0.201 5.201 19 C 0.024 3.976 20 C -0.166 4.166 21 C -0.114 4.114 22 C -0.176 4.176 23 C -0.113 4.113 24 C -0.197 4.197 25 C -0.056 4.056 26 C -0.195 4.195 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.040 0.960 35 H 0.100 0.900 36 H 0.013 0.987 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.059 0.941 44 H 0.142 0.858 45 H 0.138 0.862 46 H 0.135 0.865 47 H 0.136 0.864 48 H 0.144 0.856 49 H 0.056 0.944 50 H 0.094 0.906 51 H 0.102 0.898 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.225 4.544 -14.326 17.635 hybrid contribution 0.117 -0.639 0.063 0.653 sum -9.108 3.905 -14.263 17.368 Atomic orbital electron populations 1.21756 0.96453 1.00912 1.01525 1.21502 0.95187 0.97778 1.01764 1.21588 0.96390 0.95316 1.01633 1.22043 0.93563 0.91046 1.00299 1.62309 1.25588 1.13091 1.24183 1.19804 0.81726 0.97024 0.94971 1.21188 0.92239 1.45233 0.95702 0.92029 1.24973 0.95668 0.95820 0.98119 1.69961 0.97372 1.49900 1.36512 0.86567 0.77494 0.78548 0.85220 1.20855 1.21347 1.19829 1.21664 0.97175 0.93822 0.89541 1.21741 1.04111 0.94559 0.94684 1.22302 0.93611 0.98631 0.92544 1.58923 1.50088 1.03143 1.07920 1.19096 0.94651 0.94360 0.89448 1.20839 1.00842 1.01809 0.93093 1.20984 0.98525 0.94858 0.97081 1.21005 0.99726 0.97724 0.99184 1.20976 0.98224 0.99010 0.93103 1.21354 1.01501 0.97900 0.98980 1.22144 0.98713 0.86090 0.98670 1.22384 1.03387 0.98667 0.95018 0.92818 0.93190 0.93312 0.92639 0.91934 0.91470 0.93283 0.95986 0.89992 0.98658 0.94807 0.93034 0.91806 0.89663 0.90614 0.90203 0.94083 0.85824 0.86187 0.86547 0.86355 0.85553 0.94363 0.90627 0.89835 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.15 0.37 -1.30 16 2 C -0.12 -1.63 5.93 -26.73 -0.16 -1.79 16 3 C -0.11 -1.70 5.24 -26.73 -0.14 -1.84 16 4 C 0.06 1.09 4.71 -3.83 -0.02 1.07 16 5 N -0.53 -10.80 4.37 -227.94 -1.00 -11.80 16 6 C 0.19 4.74 3.64 -4.97 -0.02 4.72 16 7 C -0.50 -13.93 8.27 -34.44 -0.28 -14.21 16 8 H 0.06 1.70 7.79 -52.49 -0.41 1.29 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.50 13.29 55.43 0.74 -25.77 16 11 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.09 1.49 2.21 -67.59 -0.15 1.34 16 16 C -0.11 -1.87 5.28 -26.65 -0.14 -2.01 16 17 C 0.06 0.78 4.15 -3.83 -0.02 0.76 16 18 N -0.49 -7.12 4.70 -171.14 -0.80 -7.92 16 19 C 0.12 1.66 5.64 -83.78 -0.47 1.19 16 20 C -0.15 -1.82 9.16 -39.38 -0.36 -2.18 16 21 C -0.10 -1.03 10.04 -39.61 -0.40 -1.43 16 22 C -0.16 -1.61 10.04 -39.55 -0.40 -2.00 16 23 C -0.09 -1.00 10.04 -39.61 -0.40 -1.40 16 24 C -0.18 -2.13 8.82 -39.38 -0.35 -2.48 16 25 C 0.07 0.97 5.26 -3.83 -0.02 0.95 16 26 C -0.16 -2.54 4.76 -26.65 -0.13 -2.67 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.71 7.05 -51.93 -0.37 0.34 16 34 H 0.02 0.40 5.94 -51.93 -0.31 0.09 16 35 H 0.08 1.73 7.08 -51.93 -0.37 1.36 16 36 H 0.00 -0.12 7.06 -51.93 -0.37 -0.49 16 37 H 0.03 0.91 5.66 -51.93 -0.29 0.61 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.06 1.02 6.85 -51.93 -0.36 0.66 16 40 H 0.08 1.68 6.03 -51.93 -0.31 1.36 16 41 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.08 1.04 6.98 -51.93 -0.36 0.68 16 43 H 0.04 0.52 7.74 -51.93 -0.40 0.12 16 44 H 0.12 1.48 7.15 -52.49 -0.38 1.11 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 47 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 48 H 0.13 1.39 5.81 -52.49 -0.30 1.09 16 49 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 50 H 0.08 0.99 6.70 -51.93 -0.35 0.64 16 51 H 0.08 1.63 6.62 -51.93 -0.34 1.29 16 52 H 0.07 1.08 6.37 -51.93 -0.33 0.75 16 LS Contribution 390.23 15.07 5.88 5.88 Total: -1.00 -29.27 390.23 -12.41 -41.68 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -9.03 Total: 3.15 kcal Atomic # 6 Polarization: -18.64 SS G_CDS: -3.18 Total: -21.82 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -1.06 Total: -45.49 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.27 -12.41 -41.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258512166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.791 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds