Wall clock time and date at job start Tue Mar 31 2020 11:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47318 * 2 1 4 4 C 1.53000 * 109.47142 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.46963 * 185.40488 * 4 3 2 6 6 C 1.46902 * 110.99760 * 160.06794 * 5 4 3 7 7 C 1.50708 * 109.47055 * 288.59927 * 6 5 4 8 8 H 1.07999 * 120.00091 * 355.30886 * 7 6 5 9 9 C 1.37874 * 120.00250 * 175.30463 * 7 6 5 10 10 N 1.31520 * 119.99964 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00343 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46996 * 90.00120 * 11 9 7 13 13 H 1.48499 * 109.47323 * 210.00307 * 11 9 7 14 14 H 1.48503 * 109.46939 * 329.99963 * 11 9 7 15 15 C 1.46901 * 111.00104 * 284.01527 * 5 4 3 16 16 C 1.53115 * 109.52160 * 175.00214 * 15 5 4 17 17 C 1.53036 * 109.27790 * 177.56598 * 16 15 5 18 18 N 1.46852 * 109.52014 * 300.81913 * 17 16 15 19 19 C 1.39676 * 110.99834 * 185.84036 * 18 17 16 20 20 C 1.38918 * 120.07197 * 180.02562 * 19 18 17 21 21 C 1.38108 * 119.92319 * 180.02562 * 20 19 18 22 22 C 1.38282 * 120.07208 * 0.26846 * 21 20 19 23 23 C 1.38290 * 120.15492 * 359.45263 * 22 21 20 24 24 C 1.38104 * 120.06888 * 0.54917 * 23 22 21 25 25 C 1.46843 * 111.19827 * 61.74399 * 18 17 16 26 26 C 1.53041 * 109.52415 * 298.25772 * 25 18 17 27 27 H 1.09005 * 109.47273 * 299.99795 * 1 2 3 28 28 H 1.09004 * 109.47379 * 59.99164 * 1 2 3 29 29 H 1.09000 * 109.47749 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46785 * 240.00026 * 2 1 3 31 31 H 1.08995 * 109.47418 * 120.00673 * 2 1 3 32 32 H 1.08995 * 109.46814 * 60.00019 * 3 2 1 33 33 H 1.08997 * 109.47242 * 300.00156 * 3 2 1 34 34 H 1.08994 * 109.47126 * 65.40012 * 4 3 2 35 35 H 1.09002 * 109.47100 * 305.40216 * 4 3 2 36 36 H 1.08992 * 109.47734 * 48.60160 * 6 5 4 37 37 H 1.09004 * 109.47206 * 168.60710 * 6 5 4 38 38 H 0.96999 * 120.00009 * 179.97438 * 10 9 7 39 39 H 1.09002 * 109.51362 * 54.87926 * 15 5 4 40 40 H 1.08998 * 109.50798 * 57.62244 * 16 15 5 41 41 H 1.09000 * 109.53828 * 297.52044 * 16 15 5 42 42 H 1.09000 * 109.46494 * 180.80914 * 17 16 15 43 43 H 1.08997 * 109.45686 * 60.82440 * 17 16 15 44 44 H 1.07999 * 120.03274 * 0.04113 * 20 19 18 45 45 H 1.08001 * 119.96160 * 179.97438 * 21 20 19 46 46 H 1.08007 * 119.92354 * 179.70385 * 22 21 20 47 47 H 1.07996 * 119.96389 * 180.25444 * 23 22 21 48 48 H 1.08002 * 120.03399 * 179.70305 * 24 23 22 49 49 H 1.09001 * 109.46349 * 58.26958 * 25 18 17 50 50 H 1.09002 * 109.46340 * 178.24049 * 25 18 17 51 51 H 1.09004 * 109.49894 * 299.24051 * 26 25 18 52 52 H 1.09002 * 109.50549 * 179.12241 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8212 0.1298 6 6 5.4510 2.8433 0.6010 7 6 5.4973 2.4308 2.0497 8 1 4.5794 2.2510 2.5896 9 6 6.7115 2.2829 2.6859 10 7 7.8293 2.5023 2.0286 11 14 6.7690 1.7709 4.4815 12 1 6.8220 0.2896 4.5723 13 1 7.9768 2.3497 5.1229 14 1 5.5538 2.2663 5.1766 15 6 3.9215 3.5511 -1.1375 16 6 4.3237 5.0141 -0.9319 17 6 4.2360 5.7549 -2.2681 18 7 5.1288 5.1155 -3.2431 19 6 5.1734 5.8441 -4.4340 20 6 5.9633 5.4056 -5.4892 21 6 6.0055 6.1287 -6.6651 22 6 5.2669 7.2909 -6.7907 23 6 4.4750 7.7273 -5.7443 24 6 4.4282 7.0090 -4.5657 25 6 4.7332 3.7235 -3.4924 26 6 4.8356 2.9221 -2.1926 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9329 1.0148 -0.9352 35 1 3.9337 0.8470 0.8368 36 1 6.0469 2.1507 0.0068 37 1 5.8538 3.8509 0.4971 38 1 8.6836 2.3986 2.4763 39 1 2.8863 3.5019 -1.4750 40 1 5.3458 5.0613 -0.5561 41 1 3.6498 5.4798 -0.2128 42 1 4.5355 6.7935 -2.1280 43 1 3.2108 5.7190 -2.6365 44 1 6.5436 4.5001 -5.3901 45 1 6.6198 5.7886 -7.4857 46 1 5.3054 7.8571 -7.7097 47 1 3.8962 8.6332 -5.8473 48 1 3.8133 7.3529 -3.7471 49 1 3.7056 3.6974 -3.8550 50 1 5.3937 3.2867 -4.2414 51 1 5.8658 2.9363 -1.8366 52 1 4.5270 1.8926 -2.3745 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258512166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:02 Heat of formation + Delta-G solvation = 9.578045 kcal Electronic energy + Delta-G solvation = -27160.388273 eV Core-core repulsion = 23737.435645 eV Total energy + Delta-G solvation = -3422.952628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.46823 -39.74444 -37.73827 -35.71547 -34.77803 -33.00060 -32.57917 -31.34550 -30.14380 -29.73609 -27.83008 -25.34650 -24.90017 -24.42761 -23.06910 -22.47041 -21.94214 -21.46571 -20.03664 -18.67317 -18.45347 -16.94189 -16.63234 -16.53979 -16.46253 -16.00543 -15.73533 -15.35850 -15.24005 -15.11419 -14.84552 -14.53595 -14.34176 -14.16620 -14.02661 -13.69135 -13.55915 -13.49950 -13.22912 -12.98145 -12.80252 -12.74687 -12.42443 -12.31300 -12.15617 -12.06878 -12.01426 -11.88897 -11.70323 -11.68030 -11.54360 -11.39731 -11.15953 -10.98337 -10.60448 -10.52701 -9.82375 -8.87404 -8.72366 -8.16562 -6.26112 0.50178 0.52049 1.39310 1.40450 1.52014 2.40737 2.66907 2.98682 3.14879 3.25298 3.78648 3.82793 3.90859 4.05566 4.11931 4.13870 4.18047 4.23338 4.29922 4.34232 4.35783 4.45038 4.51648 4.53146 4.61003 4.62593 4.65328 4.74983 4.78245 4.85571 4.88447 4.89430 5.01975 5.03593 5.07681 5.15282 5.19187 5.20580 5.25200 5.35172 5.37701 5.41235 5.47684 5.52421 5.55624 5.57492 5.68712 5.70306 5.92570 6.09180 6.14804 6.40324 6.46208 6.73717 6.92080 7.43143 8.93083 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.003543 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.191573 B = 7900.400222 C = 9685.834574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.098 4.098 4 C 0.061 3.939 5 N -0.536 5.536 6 C 0.213 3.787 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.002 3.998 10 N -0.934 5.934 11 Si 0.963 3.037 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.265 1.265 15 C 0.088 3.912 16 C -0.108 4.108 17 C 0.066 3.934 18 N -0.507 5.507 19 C 0.100 3.900 20 C -0.162 4.162 21 C -0.099 4.099 22 C -0.156 4.156 23 C -0.097 4.097 24 C -0.186 4.186 25 C 0.078 3.922 26 C -0.145 4.145 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.026 0.974 35 H 0.050 0.950 36 H -0.038 1.038 37 H 0.009 0.991 38 H 0.262 0.738 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.062 0.938 44 H 0.119 0.881 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.144 0.856 48 H 0.134 0.866 49 H 0.055 0.945 50 H 0.082 0.918 51 H 0.041 0.959 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.789 5.020 -16.486 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.136 4.136 4 C -0.067 4.067 5 N -0.258 5.258 6 C 0.087 3.913 7 C -0.557 4.557 8 H 0.076 0.924 9 C -0.196 4.196 10 N -0.575 5.575 11 Si 0.788 3.212 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.190 1.190 15 C -0.021 4.021 16 C -0.146 4.146 17 C -0.060 4.060 18 N -0.222 5.222 19 C 0.003 3.997 20 C -0.183 4.183 21 C -0.117 4.117 22 C -0.175 4.175 23 C -0.115 4.115 24 C -0.207 4.207 25 C -0.047 4.047 26 C -0.184 4.184 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.069 0.931 36 H -0.021 1.021 37 H 0.027 0.973 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.062 0.938 41 H 0.097 0.903 42 H 0.106 0.894 43 H 0.080 0.920 44 H 0.137 0.863 45 H 0.160 0.840 46 H 0.162 0.838 47 H 0.162 0.838 48 H 0.152 0.848 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.059 0.941 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.442 5.183 -15.800 20.185 hybrid contribution 0.820 -0.796 0.420 1.217 sum -10.622 4.387 -15.380 19.199 Atomic orbital electron populations 1.21715 0.94437 1.02048 1.01982 1.21482 0.96884 0.95969 1.01691 1.21475 0.93272 0.97101 1.01790 1.22047 0.96046 0.89535 0.99105 1.62259 1.22340 1.14554 1.26635 1.19339 0.83924 0.94407 0.93669 1.21505 0.92214 1.45072 0.96945 0.92412 1.25852 0.95223 0.95736 1.02753 1.70100 0.97957 1.50968 1.38446 0.85483 0.77715 0.78428 0.79612 1.19962 1.20883 1.18974 1.21770 0.98501 0.93629 0.88161 1.21645 1.01516 0.94831 0.96602 1.22195 0.94723 0.98343 0.90790 1.58894 1.50892 1.03430 1.09034 1.19213 0.96084 0.95194 0.89242 1.20972 1.01172 1.02289 0.93852 1.21286 0.98616 0.94866 0.96949 1.21395 0.98611 0.97370 1.00085 1.21325 0.98156 0.99566 0.92467 1.21530 1.01585 0.97576 0.99990 1.22036 0.99825 0.85880 0.96993 1.22220 1.00537 0.99489 0.96202 0.92914 0.92183 0.91891 0.91916 0.92929 0.92543 0.91713 0.95566 0.93135 1.02053 0.97264 0.92931 0.89378 0.93751 0.90337 0.89444 0.92012 0.86333 0.84040 0.83841 0.83831 0.84815 0.92704 0.89980 0.94060 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.91 71.98 0.71 -2.17 16 2 C -0.12 -3.05 5.93 30.59 0.18 -2.87 16 3 C -0.10 -2.92 5.24 30.59 0.16 -2.76 16 4 C 0.06 2.32 4.71 86.30 0.41 2.72 16 5 N -0.54 -22.74 4.37 -875.06 -3.83 -26.56 16 6 C 0.21 11.35 3.64 85.56 0.31 11.66 16 7 C -0.52 -29.87 8.27 25.60 0.21 -29.66 16 8 H 0.06 3.30 7.79 -2.91 -0.02 3.27 16 9 C 0.00 0.12 5.46 84.65 0.46 0.58 16 10 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 11 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 12 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 C 0.09 3.06 2.21 44.99 0.10 3.16 16 16 C -0.11 -3.69 5.28 30.64 0.16 -3.53 16 17 C 0.07 1.81 4.15 86.32 0.36 2.17 16 18 N -0.51 -14.89 4.70 -695.38 -3.27 -18.16 16 19 C 0.10 2.63 5.64 38.22 0.22 2.85 16 20 C -0.16 -3.94 9.16 22.40 0.21 -3.73 16 21 C -0.10 -1.92 10.04 22.25 0.22 -1.69 16 22 C -0.16 -2.71 10.04 22.29 0.22 -2.48 16 23 C -0.10 -1.77 10.04 22.25 0.22 -1.55 16 24 C -0.19 -4.16 8.82 22.40 0.20 -3.96 16 25 C 0.08 2.18 5.26 86.33 0.45 2.64 16 26 C -0.15 -4.93 4.76 30.65 0.15 -4.78 16 27 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 28 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.06 1.73 7.05 -2.39 -0.02 1.71 16 34 H 0.03 0.97 5.94 -2.39 -0.01 0.95 16 35 H 0.05 2.23 7.08 -2.39 -0.02 2.21 16 36 H -0.04 -2.26 7.06 -2.39 -0.02 -2.28 16 37 H 0.01 0.55 5.66 -2.39 -0.01 0.53 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.09 2.67 6.85 -2.39 -0.02 2.66 16 40 H 0.04 1.88 6.03 -2.39 -0.01 1.87 16 41 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.09 2.23 6.98 -2.39 -0.02 2.22 16 43 H 0.06 1.44 7.74 -2.39 -0.02 1.42 16 44 H 0.12 2.87 7.15 -2.91 -0.02 2.85 16 45 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 47 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 48 H 0.13 2.68 5.81 -2.91 -0.02 2.66 16 49 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.08 2.16 6.70 -2.39 -0.02 2.14 16 51 H 0.04 1.75 6.62 -2.39 -0.02 1.73 16 52 H 0.07 2.34 6.37 -2.39 -0.02 2.32 16 Total: -1.00 -66.51 390.23 1.04 -65.47 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.87 Total: 22.51 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 4.96 Total: -33.41 kcal Atomic # 7 Polarization: -95.04 SS G_CDS: -6.81 Total: -101.85 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -66.51 1.04 -65.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258512166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.043 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds