Wall clock time and date at job start Tue Mar 31 2020 11:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47366 * 2 1 4 4 N 1.46903 * 109.47350 * 180.02562 * 3 2 1 5 5 C 1.46844 * 111.00012 * 190.00265 * 4 3 2 6 6 C 1.53036 * 109.52224 * 185.84290 * 5 4 3 7 7 C 1.53127 * 109.27768 * 300.82024 * 6 5 4 8 8 N 1.46892 * 109.52339 * 177.56178 * 7 6 5 9 9 C 1.46902 * 111.00011 * 293.38051 * 8 7 6 10 10 C 1.50700 * 109.47250 * 157.13294 * 9 8 7 11 11 H 1.08007 * 119.99912 * 354.75244 * 10 9 8 12 12 C 1.37870 * 120.00134 * 174.76022 * 10 9 8 13 13 N 1.31520 * 120.00124 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00073 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47225 * 59.99924 * 14 12 10 16 16 H 1.48500 * 109.47087 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47215 * 299.99560 * 14 12 10 18 18 C 1.46897 * 111.00177 * 169.42665 * 8 7 6 19 19 C 1.50694 * 109.47532 * 189.99785 * 18 8 7 20 20 C 1.38239 * 120.00237 * 89.99894 * 19 18 8 21 21 C 1.38229 * 120.00128 * 179.97438 * 20 19 18 22 22 C 1.38230 * 120.00529 * 359.97438 * 21 20 19 23 23 C 1.38240 * 119.99522 * 0.27747 * 22 21 20 24 24 C 1.38234 * 120.00120 * 359.50709 * 23 22 21 25 25 C 1.53118 * 109.21384 * 57.62251 * 7 6 5 26 26 C 1.46848 * 110.99757 * 314.21466 * 4 3 2 27 27 H 1.08996 * 109.47235 * 59.99299 * 1 2 3 28 28 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46865 * 299.99604 * 1 2 3 30 30 H 1.09003 * 109.46998 * 239.99896 * 2 1 3 31 31 H 1.08999 * 109.47636 * 120.00054 * 2 1 3 32 32 H 1.09006 * 109.46805 * 60.00359 * 3 2 1 33 33 H 1.08996 * 109.47120 * 300.00163 * 3 2 1 34 34 H 1.08999 * 109.46310 * 65.82305 * 5 4 3 35 35 H 1.09007 * 109.44883 * 305.84864 * 5 4 3 36 36 H 1.08994 * 109.50546 * 180.87722 * 6 5 4 37 37 H 1.09005 * 109.50261 * 60.75651 * 6 5 4 38 38 H 1.08998 * 109.51695 * 297.68418 * 7 6 5 39 39 H 1.08996 * 109.47362 * 277.13588 * 9 8 7 40 40 H 1.09001 * 109.47150 * 37.13658 * 9 8 7 41 41 H 0.96995 * 120.00150 * 180.02562 * 13 12 10 42 42 H 1.09004 * 109.46723 * 69.99697 * 18 8 7 43 43 H 1.09000 * 109.47332 * 310.00037 * 18 8 7 44 44 H 1.08005 * 119.99395 * 359.97438 * 20 19 18 45 45 H 1.08010 * 119.99799 * 180.02562 * 21 20 19 46 46 H 1.07993 * 120.00597 * 180.02562 * 22 21 20 47 47 H 1.08006 * 119.99897 * 179.72727 * 23 22 21 48 48 H 1.07995 * 119.99996 * 180.27528 * 24 23 22 49 49 H 1.08998 * 109.50063 * 62.31578 * 25 7 6 50 50 H 1.08991 * 109.50458 * 182.44237 * 25 7 6 51 51 H 1.09007 * 109.46236 * 294.16957 * 26 4 3 52 52 H 1.09001 * 109.46712 * 54.15169 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0354 2.7925 0.2375 6 6 5.5582 2.7818 0.0858 7 6 6.1593 1.7948 1.0904 8 7 7.6160 1.7368 0.9101 9 6 7.9624 1.1473 -0.3901 10 6 9.3445 1.5939 -0.7920 11 1 9.8752 2.3160 -0.1892 12 6 9.9312 1.0810 -1.9293 13 7 9.2851 0.2014 -2.6632 14 14 11.6447 1.6341 -2.4270 15 1 12.6062 1.3006 -1.3456 16 1 12.0456 0.9393 -3.6768 17 1 11.6446 3.1016 -2.6542 18 6 8.2536 0.9996 2.0090 19 6 9.7488 1.1679 1.9260 20 6 10.3637 2.2181 2.5818 21 6 11.7353 2.3722 2.5060 22 6 12.4922 1.4759 1.7750 23 6 11.8769 0.4287 1.1149 24 6 10.5057 0.2720 1.1942 25 6 5.5587 0.4064 0.8538 26 6 4.0356 0.4863 0.9816 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.7730 3.1120 1.2460 35 1 3.6032 3.4835 -0.4864 36 1 5.9501 3.7806 0.2779 37 1 5.8209 2.4757 -0.9268 38 1 5.9307 2.1227 2.1045 39 1 7.9397 0.0603 -0.3138 40 1 7.2425 1.4740 -1.1406 41 1 9.6980 -0.1598 -3.4631 42 1 8.0022 -0.0582 1.9309 43 1 7.8967 1.3884 2.9627 44 1 9.7723 2.9181 3.1534 45 1 12.2157 3.1925 3.0188 46 1 13.5639 1.5960 1.7161 47 1 12.4678 -0.2690 0.5400 48 1 10.0255 -0.5487 0.6822 49 1 5.8214 0.0619 -0.1464 50 1 5.9508 -0.2907 1.5942 51 1 3.7733 0.8166 1.9868 52 1 3.6038 -0.4976 0.7984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258771863.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:07 Heat of formation + Delta-G solvation = 31.990398 kcal Electronic energy + Delta-G solvation = -27826.622769 eV Core-core repulsion = 24404.642013 eV Total energy + Delta-G solvation = -3421.980756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.49877 -38.47303 -36.58407 -34.01682 -32.51980 -31.53076 -30.54503 -30.03714 -29.54515 -27.27659 -25.89395 -24.18385 -23.32219 -22.76133 -21.69562 -21.55928 -20.43132 -19.94481 -18.61157 -16.45684 -16.11132 -15.90249 -15.36400 -14.87819 -14.78204 -14.55246 -14.39802 -14.13823 -13.88290 -13.53477 -13.43802 -13.10269 -12.71582 -12.58118 -12.41520 -12.24499 -12.17661 -11.88216 -11.78436 -11.70932 -11.42277 -11.19729 -11.06775 -10.83892 -10.81193 -10.75143 -10.50026 -10.45286 -10.26834 -10.06620 -10.00232 -9.76916 -9.55514 -9.16088 -8.36531 -8.12577 -7.96965 -7.70301 -7.18419 -5.93840 -3.86482 2.21943 2.33251 3.40450 3.43581 3.50017 4.01421 4.46588 4.60073 4.80072 4.91077 5.02527 5.14800 5.26030 5.29013 5.38670 5.43061 5.47807 5.52588 5.58099 5.58739 5.63467 5.67705 5.74193 5.80310 5.80700 5.87755 5.90476 5.94754 5.99339 6.06564 6.10895 6.13027 6.16887 6.21245 6.35114 6.41935 6.47630 6.50079 6.74211 6.83904 6.87268 6.92342 7.22269 7.25835 7.28978 7.32210 7.39272 7.42839 7.58081 7.88782 7.94869 8.20256 8.23275 8.62374 9.16975 9.70745 11.15654 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.003710 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.291149 B = 7544.838383 C = 8430.177252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.057 3.943 4 N -0.537 5.537 5 C 0.061 3.939 6 C -0.107 4.107 7 C 0.089 3.911 8 N -0.526 5.526 9 C 0.190 3.810 10 C -0.481 4.481 11 H 0.067 0.933 12 C 0.060 3.940 13 N -0.900 5.900 14 Si 0.876 3.124 15 H -0.263 1.263 16 H -0.293 1.293 17 H -0.280 1.280 18 C 0.105 3.895 19 C -0.055 4.055 20 C -0.109 4.109 21 C -0.145 4.145 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.037 4.037 25 C -0.151 4.151 26 C 0.059 3.941 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.060 0.940 39 H -0.003 1.003 40 H 0.031 0.969 41 H 0.259 0.741 42 H 0.030 0.970 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.116 0.884 49 H 0.083 0.917 50 H 0.059 0.941 51 H 0.024 0.976 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.953 0.555 9.304 13.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.168 4.168 3 C -0.071 4.071 4 N -0.262 5.262 5 C -0.067 4.067 6 C -0.145 4.145 7 C -0.020 4.020 8 N -0.249 5.249 9 C 0.066 3.934 10 C -0.519 4.519 11 H 0.085 0.915 12 C -0.141 4.141 13 N -0.540 5.540 14 Si 0.704 3.296 15 H -0.188 1.188 16 H -0.219 1.219 17 H -0.206 1.206 18 C -0.023 4.023 19 C -0.055 4.055 20 C -0.127 4.127 21 C -0.164 4.164 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.056 4.056 25 C -0.190 4.190 26 C -0.070 4.070 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.015 0.985 40 H 0.049 0.951 41 H 0.068 0.932 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.134 0.866 49 H 0.101 0.899 50 H 0.078 0.922 51 H 0.043 0.957 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.587 0.791 8.680 12.957 hybrid contribution 0.410 -0.213 0.111 0.475 sum -9.177 0.579 8.790 12.721 Atomic orbital electron populations 1.21733 0.95791 1.01604 1.01639 1.21707 0.95417 0.96795 1.02841 1.22133 0.87758 0.96859 1.00353 1.61969 1.06405 1.07539 1.50256 1.22086 0.96474 0.89348 0.98768 1.21629 0.91934 0.99600 1.01313 1.21654 0.88949 0.93532 0.97854 1.62383 1.04948 1.53455 1.04118 1.19842 0.96744 0.92719 0.84125 1.21258 0.99924 1.23208 1.07532 0.91534 1.24844 0.97466 0.95372 0.96427 1.69952 1.37709 1.30222 1.16085 0.86891 0.85959 0.78836 0.77946 1.18759 1.21926 1.20602 1.20852 0.91209 0.95835 0.94372 1.19449 0.94464 0.94851 0.96763 1.20737 0.94112 0.97292 1.00603 1.20791 0.94213 0.99576 1.01790 1.20865 0.98705 0.96045 0.98927 1.20873 0.95166 0.98902 1.00185 1.20803 0.92909 0.98481 0.93409 1.22345 0.93873 0.99331 1.03475 1.22127 0.96038 0.96375 0.92415 0.92662 0.92665 0.93033 0.90936 0.91713 0.95426 0.90935 0.95548 0.91091 0.91158 0.89937 0.92202 0.98506 0.95077 0.93164 0.95188 0.92272 0.87400 0.87615 0.87813 0.87587 0.86636 0.89867 0.92247 0.95745 0.90694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.15 0.37 -0.88 16 2 C -0.13 -1.33 5.18 -26.73 -0.14 -1.47 16 3 C 0.06 0.65 5.27 -3.82 -0.02 0.63 16 4 N -0.54 -7.56 4.81 -234.65 -1.13 -8.68 16 5 C 0.06 0.86 5.42 -3.84 -0.02 0.84 16 6 C -0.11 -1.79 5.41 -26.65 -0.14 -1.93 16 7 C 0.09 1.53 2.24 -67.59 -0.15 1.38 16 8 N -0.53 -10.64 4.44 -229.38 -1.02 -11.66 16 9 C 0.19 4.61 3.02 -4.97 -0.02 4.60 16 10 C -0.48 -12.70 5.63 -34.44 -0.19 -12.90 16 11 H 0.07 1.84 6.50 -52.48 -0.34 1.49 16 12 C 0.06 1.63 5.45 -17.82 -0.10 1.53 16 13 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 14 Si 0.88 21.57 29.32 -169.99 -4.98 16.59 16 15 H -0.26 -6.19 6.29 56.52 0.36 -5.84 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 18 C 0.11 1.95 4.68 -4.98 -0.02 1.93 16 19 C -0.05 -1.08 3.57 -104.62 -0.37 -1.45 16 20 C -0.11 -1.99 9.65 -39.58 -0.38 -2.37 16 21 C -0.15 -2.56 10.05 -39.59 -0.40 -2.96 16 22 C -0.13 -2.33 10.05 -39.58 -0.40 -2.72 16 23 C -0.13 -2.64 9.02 -39.58 -0.36 -3.00 16 24 C -0.04 -0.78 6.51 -39.58 -0.26 -1.04 16 25 C -0.15 -2.47 4.75 -26.64 -0.13 -2.60 16 26 C 0.06 0.81 4.85 -3.83 -0.02 0.79 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.66 6.21 -51.93 -0.32 0.34 16 32 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.08 1.63 6.19 -51.93 -0.32 1.31 16 38 H 0.06 0.96 7.92 -51.93 -0.41 0.55 16 39 H 0.00 -0.08 7.24 -51.93 -0.38 -0.45 16 40 H 0.03 0.83 5.72 -51.93 -0.30 0.53 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.03 0.56 6.90 -51.93 -0.36 0.20 16 43 H 0.06 0.97 7.87 -51.93 -0.41 0.56 16 44 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 45 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 46 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 47 H 0.11 2.02 8.06 -52.48 -0.42 1.59 16 48 H 0.12 2.57 7.93 -52.49 -0.42 2.16 16 49 H 0.08 1.63 6.63 -51.93 -0.34 1.29 16 50 H 0.06 0.94 7.06 -51.93 -0.37 0.57 16 51 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 52 H 0.07 0.97 5.81 -51.93 -0.30 0.67 16 LS Contribution 386.88 15.07 5.83 5.83 Total: -1.00 -28.23 386.88 -12.67 -40.90 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -9.36 Total: 3.84 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -2.75 Total: -21.61 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -1.41 Total: -45.54 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.98 Total: 16.59 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -28.23 -12.67 -40.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258771863.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.895 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds