Wall clock time and date at job start Tue Mar 31 2020 11:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47366 * 2 1 4 4 N 1.46903 * 109.47350 * 180.02562 * 3 2 1 5 5 C 1.46844 * 111.00012 * 190.00265 * 4 3 2 6 6 C 1.53036 * 109.52224 * 185.84290 * 5 4 3 7 7 C 1.53127 * 109.27768 * 300.82024 * 6 5 4 8 8 N 1.46892 * 109.52339 * 177.56178 * 7 6 5 9 9 C 1.46902 * 111.00011 * 293.38051 * 8 7 6 10 10 C 1.50700 * 109.47250 * 157.13294 * 9 8 7 11 11 H 1.08007 * 119.99912 * 354.75244 * 10 9 8 12 12 C 1.37870 * 120.00134 * 174.76022 * 10 9 8 13 13 N 1.31520 * 120.00124 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 120.00073 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47225 * 59.99924 * 14 12 10 16 16 H 1.48500 * 109.47087 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47215 * 299.99560 * 14 12 10 18 18 C 1.46897 * 111.00177 * 169.42665 * 8 7 6 19 19 C 1.50694 * 109.47532 * 189.99785 * 18 8 7 20 20 C 1.38239 * 120.00237 * 89.99894 * 19 18 8 21 21 C 1.38229 * 120.00128 * 179.97438 * 20 19 18 22 22 C 1.38230 * 120.00529 * 359.97438 * 21 20 19 23 23 C 1.38240 * 119.99522 * 0.27747 * 22 21 20 24 24 C 1.38234 * 120.00120 * 359.50709 * 23 22 21 25 25 C 1.53118 * 109.21384 * 57.62251 * 7 6 5 26 26 C 1.46848 * 110.99757 * 314.21466 * 4 3 2 27 27 H 1.08996 * 109.47235 * 59.99299 * 1 2 3 28 28 H 1.08998 * 109.47154 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46865 * 299.99604 * 1 2 3 30 30 H 1.09003 * 109.46998 * 239.99896 * 2 1 3 31 31 H 1.08999 * 109.47636 * 120.00054 * 2 1 3 32 32 H 1.09006 * 109.46805 * 60.00359 * 3 2 1 33 33 H 1.08996 * 109.47120 * 300.00163 * 3 2 1 34 34 H 1.08999 * 109.46310 * 65.82305 * 5 4 3 35 35 H 1.09007 * 109.44883 * 305.84864 * 5 4 3 36 36 H 1.08994 * 109.50546 * 180.87722 * 6 5 4 37 37 H 1.09005 * 109.50261 * 60.75651 * 6 5 4 38 38 H 1.08998 * 109.51695 * 297.68418 * 7 6 5 39 39 H 1.08996 * 109.47362 * 277.13588 * 9 8 7 40 40 H 1.09001 * 109.47150 * 37.13658 * 9 8 7 41 41 H 0.96995 * 120.00150 * 180.02562 * 13 12 10 42 42 H 1.09004 * 109.46723 * 69.99697 * 18 8 7 43 43 H 1.09000 * 109.47332 * 310.00037 * 18 8 7 44 44 H 1.08005 * 119.99395 * 359.97438 * 20 19 18 45 45 H 1.08010 * 119.99799 * 180.02562 * 21 20 19 46 46 H 1.07993 * 120.00597 * 180.02562 * 22 21 20 47 47 H 1.08006 * 119.99897 * 179.72727 * 23 22 21 48 48 H 1.07995 * 119.99996 * 180.27528 * 24 23 22 49 49 H 1.08998 * 109.50063 * 62.31578 * 25 7 6 50 50 H 1.08991 * 109.50458 * 182.44237 * 25 7 6 51 51 H 1.09007 * 109.46236 * 294.16957 * 26 4 3 52 52 H 1.09001 * 109.46712 * 54.15169 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 -0.0006 5 6 4.0354 2.7925 0.2375 6 6 5.5582 2.7818 0.0858 7 6 6.1593 1.7948 1.0904 8 7 7.6160 1.7368 0.9101 9 6 7.9624 1.1473 -0.3901 10 6 9.3445 1.5939 -0.7920 11 1 9.8752 2.3160 -0.1892 12 6 9.9312 1.0810 -1.9293 13 7 9.2851 0.2014 -2.6632 14 14 11.6447 1.6341 -2.4270 15 1 12.6062 1.3006 -1.3456 16 1 12.0456 0.9393 -3.6768 17 1 11.6446 3.1016 -2.6542 18 6 8.2536 0.9996 2.0090 19 6 9.7488 1.1679 1.9260 20 6 10.3637 2.2181 2.5818 21 6 11.7353 2.3722 2.5060 22 6 12.4922 1.4759 1.7750 23 6 11.8769 0.4287 1.1149 24 6 10.5057 0.2720 1.1942 25 6 5.5587 0.4064 0.8538 26 6 4.0356 0.4863 0.9816 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6767 1.9563 -0.8899 34 1 3.7730 3.1120 1.2460 35 1 3.6032 3.4835 -0.4864 36 1 5.9501 3.7806 0.2779 37 1 5.8209 2.4757 -0.9268 38 1 5.9307 2.1227 2.1045 39 1 7.9397 0.0603 -0.3138 40 1 7.2425 1.4740 -1.1406 41 1 9.6980 -0.1598 -3.4631 42 1 8.0022 -0.0582 1.9309 43 1 7.8967 1.3884 2.9627 44 1 9.7723 2.9181 3.1534 45 1 12.2157 3.1925 3.0188 46 1 13.5639 1.5960 1.7161 47 1 12.4678 -0.2690 0.5400 48 1 10.0255 -0.5487 0.6822 49 1 5.8214 0.0619 -0.1464 50 1 5.9508 -0.2907 1.5942 51 1 3.7733 0.8166 1.9868 52 1 3.6038 -0.4976 0.7984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258771863.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:06 Heat of formation + Delta-G solvation = 16.513970 kcal Electronic energy + Delta-G solvation = -27827.293877 eV Core-core repulsion = 24404.642013 eV Total energy + Delta-G solvation = -3422.651864 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.86935 -39.84595 -37.94260 -35.22559 -34.45587 -32.79492 -31.78286 -31.54607 -30.96525 -29.15678 -26.99993 -25.65816 -24.60312 -24.35514 -23.16229 -22.89584 -21.53384 -21.28808 -20.09381 -18.44239 -17.52000 -17.17726 -16.58840 -16.33353 -16.26181 -15.95926 -15.83409 -15.68933 -15.08034 -14.84380 -14.76354 -14.40054 -14.21410 -14.04931 -13.76940 -13.66301 -13.40988 -13.36739 -13.14684 -12.99292 -12.84987 -12.64543 -12.48941 -12.34805 -12.18022 -12.03190 -11.95050 -11.81266 -11.64503 -11.55715 -11.37334 -11.27038 -11.20801 -11.05389 -10.46510 -9.47453 -9.27368 -9.16425 -8.86351 -8.06509 -6.04355 0.72873 0.83741 1.41802 1.42098 1.49719 2.47383 2.97177 3.04610 3.28681 3.55456 3.86530 3.90958 4.07658 4.09369 4.12503 4.19616 4.23833 4.32852 4.36713 4.44904 4.46178 4.49261 4.55047 4.58915 4.61771 4.71183 4.75053 4.78653 4.81730 4.86576 4.91027 4.96040 5.01913 5.03738 5.13789 5.20115 5.25613 5.30463 5.33663 5.37004 5.40819 5.43094 5.44552 5.54089 5.80772 5.81498 5.88180 6.05200 6.20616 6.23800 6.26053 6.41037 6.48779 6.75580 7.03927 7.56798 9.02825 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.003710 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.291149 B = 7544.838383 C = 8430.177252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.128 4.128 3 C 0.059 3.941 4 N -0.561 5.561 5 C 0.070 3.930 6 C -0.102 4.102 7 C 0.088 3.912 8 N -0.531 5.531 9 C 0.218 3.782 10 C -0.471 4.471 11 H 0.059 0.941 12 C 0.016 3.984 13 N -0.937 5.937 14 Si 0.923 3.077 15 H -0.245 1.245 16 H -0.296 1.296 17 H -0.282 1.282 18 C 0.106 3.894 19 C -0.069 4.069 20 C -0.111 4.111 21 C -0.139 4.139 22 C -0.132 4.132 23 C -0.147 4.147 24 C -0.059 4.059 25 C -0.142 4.142 26 C 0.067 3.933 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.074 0.926 34 H 0.046 0.954 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.040 0.960 38 H 0.086 0.914 39 H -0.035 1.035 40 H 0.002 0.998 41 H 0.256 0.744 42 H 0.020 0.980 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.141 0.859 46 H 0.131 0.869 47 H 0.106 0.894 48 H 0.084 0.916 49 H 0.039 0.961 50 H 0.062 0.938 51 H 0.043 0.957 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.311 2.418 11.846 15.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.166 4.166 3 C -0.068 4.068 4 N -0.286 5.286 5 C -0.058 4.058 6 C -0.140 4.140 7 C -0.020 4.020 8 N -0.254 5.254 9 C 0.092 3.908 10 C -0.509 4.509 11 H 0.077 0.923 12 C -0.181 4.181 13 N -0.579 5.579 14 Si 0.749 3.251 15 H -0.169 1.169 16 H -0.223 1.223 17 H -0.208 1.208 18 C -0.021 4.021 19 C -0.070 4.070 20 C -0.130 4.130 21 C -0.157 4.157 22 C -0.150 4.150 23 C -0.165 4.165 24 C -0.078 4.078 25 C -0.182 4.182 26 C -0.061 4.061 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.059 0.941 38 H 0.104 0.896 39 H -0.017 1.017 40 H 0.020 0.980 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.109 0.891 44 H 0.150 0.850 45 H 0.159 0.841 46 H 0.149 0.851 47 H 0.124 0.876 48 H 0.102 0.898 49 H 0.058 0.942 50 H 0.081 0.919 51 H 0.062 0.938 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.950 2.661 11.249 15.252 hybrid contribution 0.529 -0.782 -0.609 1.123 sum -9.421 1.880 10.640 14.335 Atomic orbital electron populations 1.21694 0.94089 1.02271 1.02227 1.21679 0.96860 0.95917 1.02096 1.22172 0.85847 0.97728 1.01049 1.61914 1.08301 1.07598 1.50834 1.21988 0.94022 0.89664 1.00176 1.21548 0.94473 0.99230 0.98754 1.21783 0.86986 0.94034 0.99213 1.62306 1.07322 1.53004 1.02741 1.19328 0.95110 0.90590 0.85771 1.21348 1.00482 1.22198 1.06907 0.92274 1.25453 1.00422 0.95566 0.96693 1.70076 1.39206 1.31932 1.16681 0.86135 0.83002 0.78031 0.77919 1.16859 1.22263 1.20764 1.20913 0.90922 0.95405 0.94872 1.19623 0.94903 0.95311 0.97119 1.21060 0.94954 0.96841 1.00132 1.21234 0.93947 0.99833 1.00674 1.21209 1.00262 0.95296 0.98281 1.21022 0.94795 0.99859 1.00839 1.20667 0.93749 0.98607 0.94790 1.22199 0.96293 0.98796 1.00894 1.22027 0.93668 0.97040 0.93356 0.92402 0.92015 0.92092 0.92583 0.91590 0.94030 0.90771 0.93542 0.90157 0.91049 0.94081 0.89570 1.01747 0.98003 0.93523 0.96135 0.89093 0.85029 0.84074 0.85147 0.87633 0.89792 0.94240 0.91944 0.93838 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.13 -2.44 5.18 30.59 0.16 -2.28 16 3 C 0.06 1.24 5.27 86.30 0.46 1.70 16 4 N -0.56 -15.29 4.81 -896.30 -4.31 -19.60 16 5 C 0.07 1.84 5.42 86.33 0.47 2.30 16 6 C -0.10 -3.42 5.41 30.65 0.17 -3.26 16 7 C 0.09 2.99 2.24 45.00 0.10 3.10 16 8 N -0.53 -21.72 4.44 -879.62 -3.90 -25.62 16 9 C 0.22 11.15 3.02 85.56 0.26 11.41 16 10 C -0.47 -25.68 5.63 25.60 0.14 -25.54 16 11 H 0.06 3.28 6.50 -2.91 -0.02 3.27 16 12 C 0.02 0.88 5.45 84.65 0.46 1.34 16 13 N -0.94 -56.70 13.29 21.45 0.28 -56.41 16 14 Si 0.92 44.85 29.32 68.60 2.01 46.86 16 15 H -0.24 -11.07 6.29 99.48 0.63 -10.44 16 16 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 17 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 18 C 0.11 3.91 4.68 85.56 0.40 4.31 16 19 C -0.07 -2.68 3.57 -19.87 -0.07 -2.75 16 20 C -0.11 -3.78 9.65 22.27 0.21 -3.56 16 21 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 22 C -0.13 -4.50 10.05 22.27 0.22 -4.28 16 23 C -0.15 -5.78 9.02 22.27 0.20 -5.58 16 24 C -0.06 -2.53 6.51 22.27 0.15 -2.39 16 25 C -0.14 -4.77 4.75 30.65 0.15 -4.62 16 26 C 0.07 1.79 4.85 86.33 0.42 2.21 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.24 6.21 -2.39 -0.01 1.22 16 32 H 0.04 0.78 8.08 -2.38 -0.02 0.76 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.96 8.12 -2.38 -0.02 1.94 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 37 H 0.04 1.72 6.19 -2.38 -0.01 1.70 16 38 H 0.09 2.52 7.92 -2.39 -0.02 2.50 16 39 H -0.04 -2.01 7.24 -2.39 -0.02 -2.02 16 40 H 0.00 0.12 5.72 -2.39 -0.01 0.10 16 41 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.02 0.79 6.90 -2.39 -0.02 0.77 16 43 H 0.09 2.75 7.87 -2.39 -0.02 2.73 16 44 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 45 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 47 H 0.11 4.04 8.06 -2.91 -0.02 4.01 16 48 H 0.08 4.03 7.93 -2.91 -0.02 4.01 16 49 H 0.04 1.66 6.63 -2.39 -0.02 1.64 16 50 H 0.06 2.01 7.06 -2.39 -0.02 1.99 16 51 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 52 H 0.08 2.06 5.81 -2.39 -0.01 2.05 16 Total: -1.00 -63.88 386.88 -0.31 -64.19 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.78 Total: 24.05 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 4.83 Total: -33.47 kcal Atomic # 7 Polarization: -93.71 SS G_CDS: -7.93 Total: -101.64 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.01 Total: 46.86 kcal Total: -63.88 -0.31 -64.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258771863.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.706 kcal (2) G-P(sol) polarization free energy of solvation -63.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds