Wall clock time and date at job start Tue Mar 31 2020 11:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47240 * 2 1 4 4 C 1.52997 * 109.47546 * 239.99575 * 2 1 3 5 5 C 1.50701 * 109.46765 * 59.99938 * 4 2 1 6 6 H 1.07997 * 120.00007 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99992 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99616 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00062 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47174 * 120.00490 * 9 7 5 12 12 H 1.48503 * 109.47031 * 240.00297 * 9 7 5 13 13 C 1.53004 * 109.46743 * 119.99621 * 2 1 3 14 14 N 1.46894 * 109.47306 * 300.00166 * 13 2 1 15 15 C 1.46901 * 110.99883 * 180.02562 * 14 13 2 16 16 C 1.50698 * 109.47313 * 179.97438 * 15 14 13 17 17 C 1.38127 * 120.04061 * 262.83966 * 16 15 14 18 18 C 1.38264 * 120.07481 * 179.78492 * 17 16 15 19 19 C 1.38305 * 120.15213 * 0.46992 * 18 17 16 20 20 C 1.38089 * 120.07242 * 359.78328 * 19 18 17 21 21 C 1.38895 * 120.03894 * 83.11394 * 16 15 14 22 22 N 1.39677 * 120.07026 * 359.95601 * 21 16 15 23 23 C 1.48542 * 110.99466 * 176.46374 * 22 21 16 24 24 C 1.54941 * 103.22252 * 159.72435 * 23 22 21 25 25 C 1.54593 * 102.92060 * 322.58223 * 24 23 22 26 26 C 1.47901 * 111.00313 * 293.85747 * 22 21 16 27 27 H 1.08999 * 109.47332 * 300.00608 * 1 2 3 28 28 H 1.09001 * 109.46317 * 60.00043 * 1 2 3 29 29 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47178 * 179.97438 * 3 2 1 31 31 H 1.08989 * 109.47039 * 299.99522 * 3 2 1 32 32 H 1.09001 * 109.46951 * 60.00257 * 3 2 1 33 33 H 1.08992 * 109.47378 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47155 * 300.00864 * 4 2 1 35 35 H 0.97005 * 119.99351 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47332 * 179.97438 * 13 2 1 37 37 H 1.08999 * 109.46999 * 60.00316 * 13 2 1 38 38 H 1.00904 * 111.00012 * 303.95139 * 14 13 2 39 39 H 1.09002 * 109.47493 * 299.99766 * 15 14 13 40 40 H 1.09005 * 109.47425 * 59.99853 * 15 14 13 41 41 H 1.07999 * 119.95684 * 0.02562 * 17 16 15 42 42 H 1.07996 * 119.92231 * 180.23210 * 18 17 16 43 43 H 1.07995 * 119.96009 * 179.76655 * 19 18 17 44 44 H 1.07998 * 120.03357 * 179.97438 * 20 19 18 45 45 H 1.08997 * 110.66516 * 278.15307 * 23 22 21 46 46 H 1.08995 * 110.67097 * 41.28865 * 23 22 21 47 47 H 1.09000 * 110.71715 * 204.22400 * 24 23 22 48 48 H 1.08998 * 110.72365 * 80.94201 * 24 23 22 49 49 H 1.08999 * 110.31038 * 263.04200 * 25 24 23 50 50 H 1.08997 * 110.31003 * 140.87855 * 25 24 23 51 51 H 1.08999 * 109.91248 * 333.51003 * 26 22 21 52 52 H 1.09000 * 109.91517 * 94.80379 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9172 0.8673 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6275 -1.5510 -3.8525 9 14 1.2493 0.3992 -5.2572 10 1 0.4246 1.5662 -4.8531 11 1 2.4046 0.8659 -6.0650 12 1 0.4245 -0.5341 -6.0660 13 6 2.0399 -0.7212 1.2493 14 7 1.5502 -0.0287 2.4487 15 6 2.0217 -0.6944 3.6704 16 6 1.5011 0.0428 4.8772 17 6 2.2998 0.9687 5.5196 18 6 1.8213 1.6488 6.6242 19 6 0.5455 1.3978 7.0956 20 6 -0.2564 0.4697 6.4612 21 6 0.2195 -0.2119 5.3482 22 7 -0.5891 -1.1510 4.7038 23 6 -1.8782 -1.3249 5.4212 24 6 -2.8039 -1.9410 4.3424 25 6 -2.3690 -1.2067 3.0534 26 6 -0.9440 -0.6989 3.3411 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9562 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2489 34 1 1.6767 -1.7490 -1.2492 35 1 2.8625 -1.8820 -4.7335 36 1 3.1299 -0.7217 1.2492 37 1 1.6766 -1.7489 1.2493 38 1 1.8197 0.9437 2.4402 39 1 1.6586 -1.7221 3.6875 40 1 3.1116 -0.6939 3.6870 41 1 3.2979 1.1643 5.1563 42 1 2.4466 2.3749 7.1223 43 1 0.1762 1.9281 7.9609 44 1 -1.2524 0.2739 6.8301 45 1 -1.7609 -2.0074 6.2629 46 1 -2.2650 -0.3624 5.7560 47 1 -3.8501 -1.7356 4.5690 48 1 -2.6309 -3.0134 4.2525 49 1 -3.0359 -0.3684 2.8521 50 1 -2.3616 -1.8963 2.2093 51 1 -0.9211 0.3899 3.2934 52 1 -0.2465 -1.1197 2.6169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324441124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:16 Heat of formation + Delta-G solvation = 26.773879 kcal Electronic energy + Delta-G solvation = -27676.306741 eV Core-core repulsion = 24254.099780 eV Total energy + Delta-G solvation = -3422.206961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.54324 -37.80340 -37.56314 -34.64156 -32.67915 -32.30446 -30.90758 -28.91981 -28.45711 -27.02656 -26.32785 -25.95420 -24.16547 -23.29128 -22.16546 -21.48818 -20.62176 -20.22036 -17.96206 -17.33428 -16.26438 -16.19002 -15.69508 -15.52704 -14.90209 -14.71518 -14.55179 -14.19865 -13.95762 -13.62055 -13.18365 -13.08977 -13.03364 -12.75605 -12.48540 -12.23179 -12.07980 -12.00440 -11.91386 -11.69420 -11.31493 -11.26934 -11.07601 -10.98266 -10.92669 -10.82730 -10.72430 -10.49022 -10.46400 -10.24905 -10.09753 -9.66809 -9.41732 -9.06106 -8.88215 -8.78662 -8.31136 -8.06190 -7.83686 -5.95525 -3.95407 1.30890 1.34282 3.32617 3.40654 3.43902 3.61258 3.97210 4.47967 4.59006 4.63141 4.66958 4.78748 4.87064 4.99130 5.02681 5.23606 5.28382 5.36639 5.40533 5.51492 5.55746 5.60342 5.66584 5.73285 5.80037 5.81112 5.82824 5.85821 5.92472 5.99812 6.09921 6.20382 6.25471 6.29222 6.33478 6.42367 6.49673 6.51262 6.58414 6.66101 6.75398 6.79964 6.83206 6.98996 7.21553 7.22433 7.27152 7.34222 7.42032 7.69302 7.73046 7.87180 8.05157 8.49513 9.10367 9.67434 11.16143 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.003249 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.652966 B = 8615.601466 C = 9561.081396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.057 4.057 3 C -0.129 4.129 4 C 0.034 3.966 5 C -0.505 4.505 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 C 0.068 3.932 14 N -0.678 5.678 15 C 0.099 3.901 16 C -0.091 4.091 17 C -0.095 4.095 18 C -0.147 4.147 19 C -0.100 4.100 20 C -0.177 4.177 21 C 0.124 3.876 22 N -0.472 5.472 23 C 0.026 3.974 24 C -0.124 4.124 25 C -0.137 4.137 26 C 0.050 3.950 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.012 0.988 34 H 0.015 0.985 35 H 0.258 0.742 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.337 0.663 39 H 0.086 0.914 40 H 0.032 0.968 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.126 0.874 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.074 0.926 51 H 0.052 0.948 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.483 3.268 21.912 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.057 4.057 3 C -0.186 4.186 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.060 4.060 14 N -0.310 5.310 15 C -0.030 4.030 16 C -0.094 4.094 17 C -0.114 4.114 18 C -0.166 4.166 19 C -0.119 4.119 20 C -0.198 4.198 21 C 0.026 3.974 22 N -0.188 5.188 23 C -0.101 4.101 24 C -0.162 4.162 25 C -0.175 4.175 26 C -0.074 4.074 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.030 0.970 34 H 0.033 0.967 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.156 0.844 39 H 0.105 0.895 40 H 0.050 0.950 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.144 0.856 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.092 0.908 49 H 0.083 0.917 50 H 0.093 0.907 51 H 0.071 0.929 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.746 2.292 21.687 22.827 hybrid contribution 0.364 1.351 -0.780 1.602 sum -6.382 3.643 20.906 22.160 Atomic orbital electron populations 1.21640 0.95074 1.00476 1.00187 1.20610 0.95777 0.94925 0.94381 1.21765 0.99677 0.96812 1.00346 1.19118 0.95868 0.95182 0.90185 1.21276 1.30616 1.11858 0.90607 0.92276 1.25016 0.95436 0.95124 0.99044 1.69981 1.37356 1.23243 1.23142 0.86626 0.78592 0.79747 0.83572 1.19795 1.21227 1.21172 1.22138 0.96528 0.98144 0.89236 1.60859 1.62847 1.06471 1.00832 1.20796 0.96376 0.98555 0.87252 1.19548 0.92919 0.98821 0.98063 1.20975 0.99358 0.95553 0.95520 1.20997 0.96408 1.01331 0.97878 1.20945 0.94233 0.97478 0.99256 1.21392 1.00378 0.98681 0.99300 1.18878 0.93352 0.90667 0.94501 1.61925 1.13329 1.39647 1.03851 1.23457 0.89071 1.00060 0.97468 1.22483 0.98473 1.00594 0.94640 1.22523 0.96697 1.00232 0.98096 1.23319 0.96187 0.99413 0.88503 0.93815 0.92803 0.94163 0.94158 0.91809 0.94847 0.96980 0.96693 0.93249 0.95807 0.91477 0.84373 0.89549 0.95025 0.86214 0.86467 0.86500 0.85634 0.90092 0.92606 0.91195 0.90775 0.91749 0.90691 0.92939 0.86231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 7.87 37.16 0.29 -1.85 16 2 C -0.06 -1.08 0.60 -154.51 -0.09 -1.18 16 3 C -0.13 -2.34 7.89 37.16 0.29 -2.05 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.66 7.65 -34.44 -0.26 -13.92 16 6 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.07 1.12 4.39 -3.83 -0.02 1.11 16 14 N -0.68 -9.33 2.85 -115.06 -0.33 -9.66 16 15 C 0.10 1.28 4.79 -4.98 -0.02 1.25 16 16 C -0.09 -1.13 5.30 -104.42 -0.55 -1.68 16 17 C -0.09 -1.06 9.67 -39.61 -0.38 -1.44 16 18 C -0.15 -1.50 10.04 -39.55 -0.40 -1.89 16 19 C -0.10 -1.00 10.04 -39.61 -0.40 -1.40 16 20 C -0.18 -1.93 8.91 -39.38 -0.35 -2.29 16 21 C 0.12 1.54 5.23 -83.79 -0.44 1.10 16 22 N -0.47 -5.73 4.68 -167.16 -0.78 -6.51 16 23 C 0.03 0.26 5.56 -1.89 -0.01 0.25 16 24 C -0.12 -1.16 7.06 -24.87 -0.18 -1.34 16 25 C -0.14 -1.52 6.93 -25.38 -0.18 -1.69 16 26 C 0.05 0.63 4.31 -2.76 -0.01 0.62 16 27 H 0.04 0.71 7.08 -51.93 -0.37 0.34 16 28 H 0.05 1.08 6.62 -51.93 -0.34 0.74 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 32 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.34 4.65 6.76 -39.29 -0.27 4.39 16 39 H 0.09 1.21 7.49 -51.93 -0.39 0.82 16 40 H 0.03 0.40 8.03 -51.93 -0.42 -0.02 16 41 H 0.12 1.18 8.05 -52.49 -0.42 0.76 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 44 H 0.13 1.18 5.58 -52.49 -0.29 0.88 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.52 5.95 -51.93 -0.31 0.21 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.05 0.73 7.72 -51.93 -0.40 0.32 16 52 H 0.12 1.72 5.26 -51.93 -0.27 1.45 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -28.76 388.80 -11.55 -40.30 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -9.09 Total: 3.74 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -2.92 Total: -24.24 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: -0.37 Total: -42.16 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.76 -11.55 -40.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324441124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.077 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds