Wall clock time and date at job start Tue Mar 31 2020 11:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47240 * 2 1 4 4 C 1.52997 * 109.47546 * 239.99575 * 2 1 3 5 5 C 1.50701 * 109.46765 * 59.99938 * 4 2 1 6 6 H 1.07997 * 120.00007 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99992 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99616 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00062 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47174 * 120.00490 * 9 7 5 12 12 H 1.48503 * 109.47031 * 240.00297 * 9 7 5 13 13 C 1.53004 * 109.46743 * 119.99621 * 2 1 3 14 14 N 1.46894 * 109.47306 * 300.00166 * 13 2 1 15 15 C 1.46901 * 110.99883 * 180.02562 * 14 13 2 16 16 C 1.50698 * 109.47313 * 179.97438 * 15 14 13 17 17 C 1.38127 * 120.04061 * 262.83966 * 16 15 14 18 18 C 1.38264 * 120.07481 * 179.78492 * 17 16 15 19 19 C 1.38305 * 120.15213 * 0.46992 * 18 17 16 20 20 C 1.38089 * 120.07242 * 359.78328 * 19 18 17 21 21 C 1.38895 * 120.03894 * 83.11394 * 16 15 14 22 22 N 1.39677 * 120.07026 * 359.95601 * 21 16 15 23 23 C 1.48542 * 110.99466 * 176.46374 * 22 21 16 24 24 C 1.54941 * 103.22252 * 159.72435 * 23 22 21 25 25 C 1.54593 * 102.92060 * 322.58223 * 24 23 22 26 26 C 1.47901 * 111.00313 * 293.85747 * 22 21 16 27 27 H 1.08999 * 109.47332 * 300.00608 * 1 2 3 28 28 H 1.09001 * 109.46317 * 60.00043 * 1 2 3 29 29 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47178 * 179.97438 * 3 2 1 31 31 H 1.08989 * 109.47039 * 299.99522 * 3 2 1 32 32 H 1.09001 * 109.46951 * 60.00257 * 3 2 1 33 33 H 1.08992 * 109.47378 * 180.02562 * 4 2 1 34 34 H 1.09002 * 109.47155 * 300.00864 * 4 2 1 35 35 H 0.97005 * 119.99351 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47332 * 179.97438 * 13 2 1 37 37 H 1.08999 * 109.46999 * 60.00316 * 13 2 1 38 38 H 1.00904 * 111.00012 * 303.95139 * 14 13 2 39 39 H 1.09002 * 109.47493 * 299.99766 * 15 14 13 40 40 H 1.09005 * 109.47425 * 59.99853 * 15 14 13 41 41 H 1.07999 * 119.95684 * 0.02562 * 17 16 15 42 42 H 1.07996 * 119.92231 * 180.23210 * 18 17 16 43 43 H 1.07995 * 119.96009 * 179.76655 * 19 18 17 44 44 H 1.07998 * 120.03357 * 179.97438 * 20 19 18 45 45 H 1.08997 * 110.66516 * 278.15307 * 23 22 21 46 46 H 1.08995 * 110.67097 * 41.28865 * 23 22 21 47 47 H 1.09000 * 110.71715 * 204.22400 * 24 23 22 48 48 H 1.08998 * 110.72365 * 80.94201 * 24 23 22 49 49 H 1.08999 * 110.31038 * 263.04200 * 25 24 23 50 50 H 1.08997 * 110.31003 * 140.87855 * 25 24 23 51 51 H 1.08999 * 109.91248 * 333.51003 * 26 22 21 52 52 H 1.09000 * 109.91517 * 94.80379 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9172 0.8673 -2.3806 7 6 1.8713 -0.4817 -3.7319 8 7 2.6275 -1.5510 -3.8525 9 14 1.2493 0.3992 -5.2572 10 1 0.4246 1.5662 -4.8531 11 1 2.4046 0.8659 -6.0650 12 1 0.4245 -0.5341 -6.0660 13 6 2.0399 -0.7212 1.2493 14 7 1.5502 -0.0287 2.4487 15 6 2.0217 -0.6944 3.6704 16 6 1.5011 0.0428 4.8772 17 6 2.2998 0.9687 5.5196 18 6 1.8213 1.6488 6.6242 19 6 0.5455 1.3978 7.0956 20 6 -0.2564 0.4697 6.4612 21 6 0.2195 -0.2119 5.3482 22 7 -0.5891 -1.1510 4.7038 23 6 -1.8782 -1.3249 5.4212 24 6 -2.8039 -1.9410 4.3424 25 6 -2.3690 -1.2067 3.0534 26 6 -0.9440 -0.6989 3.3411 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9562 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1300 -0.7217 -1.2489 34 1 1.6767 -1.7490 -1.2492 35 1 2.8625 -1.8820 -4.7335 36 1 3.1299 -0.7217 1.2492 37 1 1.6766 -1.7489 1.2493 38 1 1.8197 0.9437 2.4402 39 1 1.6586 -1.7221 3.6875 40 1 3.1116 -0.6939 3.6870 41 1 3.2979 1.1643 5.1563 42 1 2.4466 2.3749 7.1223 43 1 0.1762 1.9281 7.9609 44 1 -1.2524 0.2739 6.8301 45 1 -1.7609 -2.0074 6.2629 46 1 -2.2650 -0.3624 5.7560 47 1 -3.8501 -1.7356 4.5690 48 1 -2.6309 -3.0134 4.2525 49 1 -3.0359 -0.3684 2.8521 50 1 -2.3616 -1.8963 2.2093 51 1 -0.9211 0.3899 3.2934 52 1 -0.2465 -1.1197 2.6169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324441124.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:15 Heat of formation + Delta-G solvation = 13.023927 kcal Electronic energy + Delta-G solvation = -27676.902984 eV Core-core repulsion = 24254.099780 eV Total energy + Delta-G solvation = -3422.803204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40909 -39.13445 -38.55758 -36.00443 -34.32299 -33.43905 -31.99429 -29.79972 -29.36227 -28.90850 -27.85893 -27.23100 -25.66006 -24.13995 -23.81092 -22.42136 -21.45069 -21.08457 -19.53192 -18.33864 -18.19061 -17.19104 -16.75794 -16.52494 -16.38903 -15.84944 -15.67877 -15.47795 -15.19270 -14.67351 -14.59908 -14.37599 -14.07712 -13.88089 -13.77385 -13.71403 -13.29383 -13.23544 -12.96373 -12.81424 -12.78146 -12.63904 -12.41620 -12.24596 -12.15919 -12.11595 -12.06320 -11.96621 -11.82828 -11.73451 -11.35722 -11.28166 -10.84048 -10.72432 -10.49980 -10.28859 -9.73643 -9.21055 -8.73080 -8.13009 -6.19596 0.47453 0.52030 1.40117 1.41373 1.53250 2.44264 2.77389 3.11541 3.21164 3.49292 3.78563 3.84888 3.93256 4.02187 4.16758 4.18582 4.22929 4.28076 4.39979 4.43091 4.46197 4.53576 4.66579 4.72740 4.75949 4.77684 4.83322 4.86589 4.97190 4.98173 4.99577 5.05194 5.10207 5.11274 5.21011 5.24159 5.24512 5.32281 5.43929 5.53501 5.55232 5.57508 5.60875 5.61587 5.67691 5.68672 5.89870 5.93710 5.95139 6.06903 6.13816 6.38420 6.50022 6.54139 6.96049 7.47700 8.99510 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.003249 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.652966 B = 8615.601466 C = 9561.081396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.051 4.051 3 C -0.121 4.121 4 C 0.041 3.959 5 C -0.511 4.511 6 H 0.066 0.934 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.954 3.046 10 H -0.261 1.261 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.083 3.917 14 N -0.666 5.666 15 C 0.108 3.892 16 C -0.109 4.109 17 C -0.102 4.102 18 C -0.149 4.149 19 C -0.100 4.100 20 C -0.183 4.183 21 C 0.108 3.892 22 N -0.484 5.484 23 C 0.027 3.973 24 C -0.118 4.118 25 C -0.139 4.139 26 C 0.057 3.943 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.065 0.935 33 H -0.018 1.018 34 H -0.016 1.016 35 H 0.259 0.741 36 H 0.016 0.984 37 H 0.056 0.944 38 H 0.341 0.659 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.129 0.871 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.140 0.860 45 H 0.088 0.912 46 H 0.065 0.935 47 H 0.090 0.910 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.065 0.935 51 H 0.040 0.960 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.802 5.148 23.872 25.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.052 4.052 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.549 4.549 6 H 0.084 0.916 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.780 3.220 10 H -0.184 1.184 11 H -0.209 1.209 12 H -0.209 1.209 13 C -0.046 4.046 14 N -0.298 5.298 15 C -0.021 4.021 16 C -0.111 4.111 17 C -0.121 4.121 18 C -0.168 4.168 19 C -0.118 4.118 20 C -0.203 4.203 21 C 0.009 3.991 22 N -0.200 5.200 23 C -0.100 4.100 24 C -0.156 4.156 25 C -0.177 4.177 26 C -0.068 4.068 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.000 1.000 34 H 0.002 0.998 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.074 0.926 38 H 0.160 0.840 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.147 0.853 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.158 0.842 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.108 0.892 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.084 0.916 51 H 0.058 0.942 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.073 4.186 23.668 25.355 hybrid contribution 0.799 0.752 -1.297 1.699 sum -7.275 4.937 22.371 24.036 Atomic orbital electron populations 1.21508 0.94134 1.00059 1.00403 1.20453 0.96369 0.95343 0.92996 1.21672 0.99388 0.95780 1.01004 1.18994 0.93847 0.94088 0.92731 1.21647 1.29995 1.11817 0.91422 0.91617 1.25908 0.95765 0.95911 1.02537 1.70121 1.38955 1.24992 1.23898 0.85549 0.78107 0.78839 0.79489 1.18444 1.20915 1.20887 1.21808 0.95832 0.97495 0.89436 1.60785 1.62515 1.06334 1.00137 1.20665 0.96388 0.97894 0.87140 1.19538 0.93576 0.99842 0.98177 1.21162 0.99710 0.95326 0.95910 1.21310 0.96838 1.01278 0.97372 1.21302 0.93987 0.96901 0.99641 1.21623 1.01259 0.98595 0.98844 1.19058 0.93442 0.91264 0.95289 1.61891 1.14453 1.39901 1.03778 1.23526 0.88137 1.00720 0.97584 1.22474 0.99535 1.00109 0.93457 1.22518 0.95993 1.00465 0.98711 1.23103 0.96588 0.98331 0.88737 0.91334 0.94565 0.94962 0.94573 0.93557 0.91649 0.99959 0.99781 0.93233 0.96562 0.92566 0.83989 0.90988 0.94779 0.85313 0.84235 0.83926 0.84199 0.89340 0.91682 0.89167 0.91114 0.91053 0.91624 0.94166 0.88412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.82 7.87 71.98 0.57 -3.26 16 2 C -0.05 -2.00 0.60 -52.18 -0.03 -2.03 16 3 C -0.12 -4.34 7.89 71.98 0.57 -3.77 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.51 -28.18 7.65 25.60 0.20 -27.99 16 6 H 0.07 3.48 5.68 -2.91 -0.02 3.47 16 7 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 8 N -0.94 -57.55 13.29 21.45 0.28 -57.27 16 9 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.08 2.82 4.39 86.31 0.38 3.20 16 14 N -0.67 -18.09 2.85 -517.93 -1.48 -19.57 16 15 C 0.11 2.76 4.79 85.56 0.41 3.17 16 16 C -0.11 -2.58 5.30 -19.73 -0.10 -2.69 16 17 C -0.10 -2.09 9.67 22.25 0.22 -1.87 16 18 C -0.15 -2.61 10.04 22.29 0.22 -2.38 16 19 C -0.10 -1.68 10.04 22.25 0.22 -1.46 16 20 C -0.18 -3.55 8.91 22.40 0.20 -3.35 16 21 C 0.11 2.51 5.23 38.21 0.20 2.71 16 22 N -0.48 -11.31 4.68 -682.77 -3.19 -14.51 16 23 C 0.03 0.48 5.56 86.65 0.48 0.96 16 24 C -0.12 -2.02 7.06 31.80 0.22 -1.79 16 25 C -0.14 -2.94 6.93 31.47 0.22 -2.72 16 26 C 0.06 1.42 4.31 86.45 0.37 1.79 16 27 H 0.07 2.17 7.08 -2.39 -0.02 2.15 16 28 H 0.04 1.44 6.62 -2.39 -0.02 1.42 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 1.81 6.62 -2.39 -0.02 1.80 16 32 H 0.06 1.91 6.57 -2.39 -0.02 1.90 16 33 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 34 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 35 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 36 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.34 8.93 6.76 -89.69 -0.61 8.33 16 39 H 0.07 2.06 7.49 -2.39 -0.02 2.04 16 40 H 0.03 0.85 8.03 -2.38 -0.02 0.83 16 41 H 0.13 2.31 8.05 -2.91 -0.02 2.28 16 42 H 0.14 1.77 8.06 -2.91 -0.02 1.74 16 43 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 44 H 0.14 2.22 5.58 -2.91 -0.02 2.20 16 45 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.07 1.05 5.95 -2.39 -0.01 1.03 16 47 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 48 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.04 1.07 7.72 -2.39 -0.02 1.05 16 52 H 0.10 2.84 5.26 -2.39 -0.01 2.83 16 Total: -1.00 -63.42 388.80 2.85 -60.57 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.28 Total: 23.23 kcal Atomic # 6 Polarization: -43.97 SS G_CDS: 4.92 Total: -39.04 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -4.38 Total: -91.34 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -63.42 2.85 -60.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324441124.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.595 kcal (2) G-P(sol) polarization free energy of solvation -63.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds