Wall clock time and date at job start Tue Mar 31 2020 11:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46931 * 2 1 4 4 C 1.52998 * 109.47054 * 120.00044 * 2 1 3 5 5 C 1.50704 * 109.47366 * 294.99980 * 4 2 1 6 6 H 1.08006 * 119.99605 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00027 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00216 * 359.72400 * 7 5 4 10 10 H 1.48507 * 109.46917 * 270.27778 * 9 7 5 11 11 H 1.48497 * 109.46936 * 30.27483 * 9 7 5 12 12 H 1.48495 * 109.47444 * 150.27567 * 9 7 5 13 13 C 1.53005 * 109.47137 * 240.00061 * 2 1 3 14 14 N 1.46906 * 109.46956 * 64.99638 * 13 2 1 15 15 C 1.46893 * 110.99855 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47015 * 179.97438 * 15 14 13 17 17 N 1.46909 * 109.46830 * 185.71841 * 16 15 14 18 18 C 1.39400 * 111.00310 * 294.30561 * 17 16 15 19 19 C 1.39622 * 117.65463 * 74.57574 * 18 17 16 20 20 C 1.37809 * 120.41887 * 180.33985 * 19 18 17 21 21 C 1.38314 * 119.95213 * 0.02562 * 20 19 18 22 22 C 1.38050 * 119.88817 * 359.84695 * 21 20 19 23 23 C 1.38368 * 122.96017 * 254.66226 * 18 17 16 24 24 C 1.50805 * 122.00931 * 359.14211 * 23 18 17 25 25 C 1.53041 * 109.65180 * 15.76718 * 24 23 18 26 26 C 1.46422 * 110.99456 * 167.56552 * 17 16 15 27 27 H 1.09007 * 109.60276 * 191.96332 * 26 17 16 28 28 C 1.52998 * 109.60733 * 312.45506 * 26 17 16 29 29 H 1.09010 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47208 * 299.99669 * 1 2 3 31 31 H 1.08993 * 109.47292 * 60.00564 * 1 2 3 32 32 H 1.09005 * 109.46975 * 175.00232 * 4 2 1 33 33 H 1.08998 * 109.47466 * 55.00124 * 4 2 1 34 34 H 0.97005 * 120.00316 * 179.72066 * 8 7 5 35 35 H 1.08996 * 109.46981 * 184.99663 * 13 2 1 36 36 H 1.09000 * 109.46959 * 305.00117 * 13 2 1 37 37 H 1.00901 * 110.99951 * 303.95690 * 14 13 2 38 38 H 1.08998 * 109.47521 * 300.00676 * 15 14 13 39 39 H 1.09009 * 109.46891 * 60.00369 * 15 14 13 40 40 H 1.08992 * 109.47668 * 305.71853 * 16 15 14 41 41 H 1.09002 * 109.46956 * 65.72435 * 16 15 14 42 42 H 1.07998 * 119.79479 * 0.31261 * 19 18 17 43 43 H 1.07994 * 120.02311 * 179.97438 * 20 19 18 44 44 H 1.08001 * 120.05457 * 179.87458 * 21 20 19 45 45 H 1.08005 * 119.75719 * 180.02562 * 22 21 20 46 46 H 1.09001 * 109.44231 * 135.81943 * 24 23 18 47 47 H 1.08997 * 109.44393 * 255.74966 * 24 23 18 48 48 H 1.08998 * 109.77424 * 72.25384 * 25 24 23 49 49 H 1.08998 * 109.77181 * 192.98704 * 25 24 23 50 50 H 1.09005 * 109.46923 * 60.00324 * 28 26 17 51 51 H 1.09004 * 109.47008 * 179.97438 * 28 26 17 52 52 H 1.08990 * 109.47301 * 299.99757 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9933 -0.4017 3.7282 8 7 1.6458 0.2777 4.7993 9 14 2.9576 -1.9920 3.9031 10 1 2.0139 -3.1332 4.0163 11 1 3.8216 -2.1807 2.7102 12 1 3.8036 -1.9265 5.1217 13 6 2.0401 -0.7213 -1.2493 14 7 1.6513 0.0374 -2.4457 15 6 2.1257 -0.6264 -3.6672 16 6 1.7022 0.1910 -4.8892 17 7 2.0557 -0.5399 -6.1136 18 6 3.4388 -0.6541 -6.2455 19 6 4.0951 -1.5692 -5.4201 20 6 5.4623 -1.7233 -5.4978 21 6 6.1924 -0.9681 -6.3977 22 6 5.5486 -0.0637 -7.2183 23 6 4.1733 0.0945 -7.1480 24 6 3.5235 1.0869 -8.0792 25 6 2.1037 1.3923 -7.5964 26 6 1.4134 0.0583 -7.2856 27 1 1.5126 -0.6123 -8.1392 28 6 -0.0677 0.3032 -6.9903 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 3.1264 -0.7994 1.2056 33 1 1.6055 -1.7198 1.2952 34 1 1.8899 -0.0472 5.6802 35 1 3.1263 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2952 37 1 0.6528 0.1793 -2.4753 38 1 3.2126 -0.7037 -3.6401 39 1 1.6920 -1.6246 -3.7300 40 1 0.6249 0.3541 -4.8617 41 1 2.2157 1.1524 -4.8789 42 1 3.5278 -2.1596 -4.7159 43 1 5.9635 -2.4327 -4.8560 44 1 7.2642 -1.0861 -6.4586 45 1 6.1206 0.5247 -7.9205 46 1 4.1075 2.0072 -8.0937 47 1 3.4819 0.6678 -9.0845 48 1 2.1442 2.0050 -6.6958 49 1 1.5544 1.9196 -8.3764 50 1 -0.1618 0.9799 -6.1409 51 1 -0.5435 0.7489 -7.8639 52 1 -0.5528 -0.6442 -6.7556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331052754.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:48 Heat of formation + Delta-G solvation = 19.849992 kcal Electronic energy + Delta-G solvation = -26679.107028 eV Core-core repulsion = 23256.599825 eV Total energy + Delta-G solvation = -3422.507203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.11593 -37.72717 -37.07430 -34.93801 -33.46249 -32.08623 -31.90708 -30.13571 -28.90141 -27.75780 -27.13619 -25.15457 -24.02448 -22.51933 -22.30852 -22.25733 -21.56119 -19.28550 -18.85338 -17.10638 -16.83227 -16.55263 -16.00127 -15.89256 -15.12032 -14.80224 -14.55455 -14.28558 -14.24509 -13.85231 -13.78308 -13.53263 -13.28918 -13.09551 -12.85193 -12.67955 -12.50840 -12.42816 -12.08202 -11.90738 -11.75495 -11.66372 -11.56002 -11.32047 -11.09741 -11.02705 -10.91027 -10.72013 -10.63441 -10.39322 -9.78770 -9.71072 -9.51545 -9.38051 -9.03576 -8.85606 -8.49594 -8.21775 -8.07262 -5.99893 -3.96712 1.17929 1.22631 3.33058 3.34431 3.40612 3.44570 3.61828 4.33990 4.38095 4.46981 4.48946 4.56836 4.71951 4.85777 4.91326 4.94416 5.03301 5.07495 5.12031 5.25978 5.32418 5.33789 5.34648 5.42508 5.44877 5.52479 5.57647 5.64147 5.65931 5.70263 5.81219 5.84986 5.85759 5.89434 5.98012 5.98535 6.17458 6.18814 6.27603 6.39103 6.39891 6.48143 6.61799 6.78470 6.82307 6.98649 7.08124 7.20501 7.27270 7.34784 7.50706 7.61976 7.85099 8.59680 9.05809 9.63154 11.13569 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.002647 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.072286 B =10576.356687 C =11699.542730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.076 4.076 3 H 0.071 0.929 4 C -0.008 4.008 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.266 1.266 12 H -0.289 1.289 13 C 0.065 3.935 14 N -0.689 5.689 15 C 0.052 3.948 16 C 0.055 3.945 17 N -0.496 5.496 18 C 0.115 3.885 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.134 4.134 22 C -0.107 4.107 23 C -0.121 4.121 24 C -0.077 4.077 25 C -0.155 4.155 26 C 0.086 3.914 27 H 0.087 0.913 28 C -0.153 4.153 29 H 0.040 0.960 30 H 0.068 0.932 31 H 0.034 0.966 32 H 0.015 0.985 33 H 0.009 0.991 34 H 0.262 0.738 35 H 0.066 0.934 36 H 0.024 0.976 37 H 0.338 0.662 38 H 0.079 0.921 39 H 0.035 0.965 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.064 0.936 51 H 0.064 0.936 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 -1.166 -30.005 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.191 1.191 12 H -0.215 1.215 13 C -0.064 4.064 14 N -0.321 5.321 15 C -0.077 4.077 16 C -0.070 4.070 17 N -0.213 5.213 18 C 0.018 3.982 19 C -0.139 4.139 20 C -0.129 4.129 21 C -0.153 4.153 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.114 4.114 25 C -0.193 4.193 26 C -0.022 4.022 27 H 0.105 0.895 28 C -0.211 4.211 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.042 0.958 37 H 0.156 0.844 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.148 0.852 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.136 0.864 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.083 0.917 51 H 0.083 0.917 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.031 -1.196 -29.720 29.898 hybrid contribution 0.300 -0.931 0.128 0.987 sum 3.331 -2.127 -29.591 29.854 Atomic orbital electron populations 1.21750 0.96237 1.00499 1.00790 1.21032 0.95214 1.00192 0.93001 0.91047 1.19601 0.95936 0.95679 0.93419 1.21138 1.35186 1.09592 0.89102 0.90825 1.25027 0.95666 0.96953 0.95964 1.69916 1.47333 1.39278 0.97980 0.86805 0.80633 0.84361 0.77631 1.20429 1.19063 1.21494 1.22140 1.00267 0.94433 0.89578 1.60482 1.19570 1.50703 1.01384 1.22263 1.01182 0.95365 0.88918 1.22236 1.01747 0.95507 0.87467 1.58681 1.06714 1.52076 1.03827 1.18445 0.87784 0.95334 0.96606 1.21260 0.94529 0.98198 0.99963 1.21026 0.93853 0.99470 0.98534 1.21040 0.99762 0.97478 0.97000 1.20936 0.93441 0.98798 0.99395 1.19917 0.93888 0.98071 1.00513 1.20509 0.95594 0.97635 0.97702 1.22273 0.96180 0.98502 1.02385 1.21724 0.93995 0.94063 0.92428 0.89506 1.22016 0.94212 1.02616 1.02214 0.94082 0.91348 0.94723 0.96694 0.97250 0.92850 0.91561 0.95788 0.84374 0.90315 0.94720 0.89368 0.93198 0.85246 0.85896 0.86212 0.86385 0.90588 0.90688 0.91115 0.90583 0.91677 0.91724 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.77 37.16 0.33 -2.15 16 2 C -0.08 -1.50 2.55 -90.62 -0.23 -1.73 16 3 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 4 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 5 C -0.51 -14.56 8.96 -34.44 -0.31 -14.87 16 6 H 0.07 2.24 7.30 -52.48 -0.38 1.86 16 7 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.15 13.96 55.43 0.77 -27.38 16 9 Si 0.88 21.99 27.46 -169.99 -4.67 17.32 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.41 6.55 56.52 0.37 -6.04 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 C 0.06 1.07 5.14 -3.82 -0.02 1.05 16 14 N -0.69 -9.82 6.50 -113.78 -0.74 -10.56 16 15 C 0.05 0.65 4.37 -3.83 -0.02 0.63 16 16 C 0.06 0.60 4.40 -3.82 -0.02 0.58 16 17 N -0.50 -5.10 4.44 -163.72 -0.73 -5.83 16 18 C 0.11 1.27 5.06 -83.85 -0.42 0.85 16 19 C -0.12 -1.35 7.53 -39.22 -0.30 -1.64 16 20 C -0.11 -1.13 10.04 -39.71 -0.40 -1.53 16 21 C -0.13 -1.28 10.05 -39.62 -0.40 -1.67 16 22 C -0.11 -1.01 9.63 -39.51 -0.38 -1.39 16 23 C -0.12 -1.22 5.74 -104.38 -0.60 -1.82 16 24 C -0.08 -0.61 5.81 -27.81 -0.16 -0.77 16 25 C -0.15 -1.17 5.33 -26.51 -0.14 -1.31 16 26 C 0.09 0.71 2.83 -67.77 -0.19 0.52 16 27 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 28 C -0.15 -1.07 8.57 37.16 0.32 -0.76 16 29 H 0.04 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 31 H 0.03 0.53 6.68 -51.93 -0.35 0.18 16 32 H 0.01 0.36 7.21 -51.93 -0.37 -0.01 16 33 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.34 4.48 6.98 -39.29 -0.27 4.21 16 38 H 0.08 1.05 5.56 -51.93 -0.29 0.76 16 39 H 0.03 0.44 7.91 -51.92 -0.41 0.03 16 40 H 0.09 0.86 5.42 -51.93 -0.28 0.58 16 41 H 0.05 0.59 6.98 -51.93 -0.36 0.23 16 42 H 0.13 1.45 6.17 -52.49 -0.32 1.13 16 43 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.62 6.68 -51.93 -0.35 0.27 16 49 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.06 0.47 6.06 -51.93 -0.31 0.16 16 51 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 52 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -30.87 388.22 -11.77 -42.64 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -9.12 Total: 2.47 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: -3.13 Total: -24.52 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.69 Total: -43.76 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.87 -11.77 -42.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331052754.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.488 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds