Wall clock time and date at job start Tue Mar 31 2020 11:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46931 * 2 1 4 4 C 1.52998 * 109.47054 * 120.00044 * 2 1 3 5 5 C 1.50704 * 109.47366 * 294.99980 * 4 2 1 6 6 H 1.08006 * 119.99605 * 0.02562 * 5 4 2 7 7 C 1.37868 * 120.00076 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00027 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00216 * 359.72400 * 7 5 4 10 10 H 1.48507 * 109.46917 * 270.27778 * 9 7 5 11 11 H 1.48497 * 109.46936 * 30.27483 * 9 7 5 12 12 H 1.48495 * 109.47444 * 150.27567 * 9 7 5 13 13 C 1.53005 * 109.47137 * 240.00061 * 2 1 3 14 14 N 1.46906 * 109.46956 * 64.99638 * 13 2 1 15 15 C 1.46893 * 110.99855 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47015 * 179.97438 * 15 14 13 17 17 N 1.46909 * 109.46830 * 185.71841 * 16 15 14 18 18 C 1.39400 * 111.00310 * 294.30561 * 17 16 15 19 19 C 1.39622 * 117.65463 * 74.57574 * 18 17 16 20 20 C 1.37809 * 120.41887 * 180.33985 * 19 18 17 21 21 C 1.38314 * 119.95213 * 0.02562 * 20 19 18 22 22 C 1.38050 * 119.88817 * 359.84695 * 21 20 19 23 23 C 1.38368 * 122.96017 * 254.66226 * 18 17 16 24 24 C 1.50805 * 122.00931 * 359.14211 * 23 18 17 25 25 C 1.53041 * 109.65180 * 15.76718 * 24 23 18 26 26 C 1.46422 * 110.99456 * 167.56552 * 17 16 15 27 27 H 1.09007 * 109.60276 * 191.96332 * 26 17 16 28 28 C 1.52998 * 109.60733 * 312.45506 * 26 17 16 29 29 H 1.09010 * 109.46697 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47208 * 299.99669 * 1 2 3 31 31 H 1.08993 * 109.47292 * 60.00564 * 1 2 3 32 32 H 1.09005 * 109.46975 * 175.00232 * 4 2 1 33 33 H 1.08998 * 109.47466 * 55.00124 * 4 2 1 34 34 H 0.97005 * 120.00316 * 179.72066 * 8 7 5 35 35 H 1.08996 * 109.46981 * 184.99663 * 13 2 1 36 36 H 1.09000 * 109.46959 * 305.00117 * 13 2 1 37 37 H 1.00901 * 110.99951 * 303.95690 * 14 13 2 38 38 H 1.08998 * 109.47521 * 300.00676 * 15 14 13 39 39 H 1.09009 * 109.46891 * 60.00369 * 15 14 13 40 40 H 1.08992 * 109.47668 * 305.71853 * 16 15 14 41 41 H 1.09002 * 109.46956 * 65.72435 * 16 15 14 42 42 H 1.07998 * 119.79479 * 0.31261 * 19 18 17 43 43 H 1.07994 * 120.02311 * 179.97438 * 20 19 18 44 44 H 1.08001 * 120.05457 * 179.87458 * 21 20 19 45 45 H 1.08005 * 119.75719 * 180.02562 * 22 21 20 46 46 H 1.09001 * 109.44231 * 135.81943 * 24 23 18 47 47 H 1.08997 * 109.44393 * 255.74966 * 24 23 18 48 48 H 1.08998 * 109.77424 * 72.25384 * 25 24 23 49 49 H 1.08998 * 109.77181 * 192.98704 * 25 24 23 50 50 H 1.09005 * 109.46923 * 60.00324 * 28 26 17 51 51 H 1.09004 * 109.47008 * 179.97438 * 28 26 17 52 52 H 1.08990 * 109.47301 * 299.99757 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4766 6 1 1.0800 0.9742 2.3757 7 6 1.9933 -0.4017 3.7282 8 7 1.6458 0.2777 4.7993 9 14 2.9576 -1.9920 3.9031 10 1 2.0139 -3.1332 4.0163 11 1 3.8216 -2.1807 2.7102 12 1 3.8036 -1.9265 5.1217 13 6 2.0401 -0.7213 -1.2493 14 7 1.6513 0.0374 -2.4457 15 6 2.1257 -0.6264 -3.6672 16 6 1.7022 0.1910 -4.8892 17 7 2.0557 -0.5399 -6.1136 18 6 3.4388 -0.6541 -6.2455 19 6 4.0951 -1.5692 -5.4201 20 6 5.4623 -1.7233 -5.4978 21 6 6.1924 -0.9681 -6.3977 22 6 5.5486 -0.0637 -7.2183 23 6 4.1733 0.0945 -7.1480 24 6 3.5235 1.0869 -8.0792 25 6 2.1037 1.3923 -7.5964 26 6 1.4134 0.0583 -7.2856 27 1 1.5126 -0.6123 -8.1392 28 6 -0.0677 0.3032 -6.9903 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 3.1264 -0.7994 1.2056 33 1 1.6055 -1.7198 1.2952 34 1 1.8899 -0.0472 5.6802 35 1 3.1263 -0.7994 -1.2056 36 1 1.6054 -1.7198 -1.2952 37 1 0.6528 0.1793 -2.4753 38 1 3.2126 -0.7037 -3.6401 39 1 1.6920 -1.6246 -3.7300 40 1 0.6249 0.3541 -4.8617 41 1 2.2157 1.1524 -4.8789 42 1 3.5278 -2.1596 -4.7159 43 1 5.9635 -2.4327 -4.8560 44 1 7.2642 -1.0861 -6.4586 45 1 6.1206 0.5247 -7.9205 46 1 4.1075 2.0072 -8.0937 47 1 3.4819 0.6678 -9.0845 48 1 2.1442 2.0050 -6.6958 49 1 1.5544 1.9196 -8.3764 50 1 -0.1618 0.9799 -6.1409 51 1 -0.5435 0.7489 -7.8639 52 1 -0.5528 -0.6442 -6.7556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331052754.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:47 Heat of formation + Delta-G solvation = 2.127794 kcal Electronic energy + Delta-G solvation = -26679.875520 eV Core-core repulsion = 23256.599825 eV Total energy + Delta-G solvation = -3423.275695 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.83385 -38.67884 -38.20344 -36.12793 -34.80109 -33.76459 -32.68774 -30.93800 -30.10642 -28.99173 -28.26218 -26.55844 -24.80223 -23.94671 -23.17709 -22.94317 -22.70632 -20.70207 -19.80533 -18.94299 -17.82869 -17.39247 -17.00492 -16.85646 -16.31982 -15.87071 -15.67242 -15.47457 -15.06438 -15.00925 -14.97045 -14.57174 -14.47491 -14.16368 -13.85412 -13.81914 -13.65141 -13.43693 -13.20282 -13.04636 -12.98324 -12.80706 -12.51392 -12.47421 -12.27988 -12.12062 -12.07778 -11.80258 -11.71883 -11.58302 -11.46785 -11.39110 -11.18446 -11.04880 -10.73669 -10.19948 -9.59718 -9.35879 -8.84049 -8.26004 -6.28238 0.43234 0.47227 1.35438 1.37517 1.49303 2.37731 2.56056 2.87637 3.09213 3.40927 3.73458 3.80719 3.85175 3.95541 4.06614 4.14027 4.22497 4.23526 4.26423 4.32131 4.40573 4.42347 4.47021 4.53516 4.60005 4.65922 4.72468 4.75332 4.80221 4.83096 4.88218 4.91588 4.98085 4.99773 5.02583 5.03654 5.08148 5.18333 5.26833 5.29581 5.31815 5.38198 5.45500 5.54529 5.56889 5.65609 5.69418 5.73051 5.88100 6.07924 6.09420 6.34734 6.46770 6.52009 6.79257 7.35315 8.90770 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.002647 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.072286 B =10576.356687 C =11699.542730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 H 0.052 0.948 4 C -0.006 4.006 5 C -0.518 4.518 6 H 0.035 0.965 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.267 1.267 11 H -0.248 1.248 12 H -0.286 1.286 13 C 0.078 3.922 14 N -0.692 5.692 15 C 0.059 3.941 16 C 0.066 3.934 17 N -0.501 5.501 18 C 0.097 3.903 19 C -0.137 4.137 20 C -0.123 4.123 21 C -0.140 4.140 22 C -0.114 4.114 23 C -0.132 4.132 24 C -0.077 4.077 25 C -0.150 4.150 26 C 0.083 3.917 27 H 0.087 0.913 28 C -0.149 4.149 29 H 0.049 0.951 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.014 0.986 33 H 0.017 0.983 34 H 0.264 0.736 35 H 0.061 0.939 36 H 0.033 0.967 37 H 0.345 0.655 38 H 0.069 0.931 39 H 0.036 0.964 40 H 0.100 0.900 41 H 0.037 0.963 42 H 0.123 0.877 43 H 0.133 0.867 44 H 0.139 0.861 45 H 0.139 0.861 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.095 0.905 50 H 0.061 0.939 51 H 0.081 0.919 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.246 -2.183 -32.570 32.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.044 4.044 5 C -0.556 4.556 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.595 5.595 9 Si 0.771 3.229 10 H -0.192 1.192 11 H -0.172 1.172 12 H -0.212 1.212 13 C -0.051 4.051 14 N -0.325 5.325 15 C -0.070 4.070 16 C -0.060 4.060 17 N -0.218 5.218 18 C 0.000 4.000 19 C -0.157 4.157 20 C -0.141 4.141 21 C -0.158 4.158 22 C -0.132 4.132 23 C -0.134 4.134 24 C -0.114 4.114 25 C -0.189 4.189 26 C -0.025 4.025 27 H 0.105 0.895 28 C -0.206 4.206 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.033 0.967 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.165 0.835 38 H 0.087 0.913 39 H 0.054 0.946 40 H 0.118 0.882 41 H 0.055 0.945 42 H 0.141 0.859 43 H 0.151 0.849 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.102 0.898 47 H 0.106 0.894 48 H 0.075 0.925 49 H 0.114 0.886 50 H 0.080 0.920 51 H 0.100 0.900 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.537 -2.210 -32.318 32.586 hybrid contribution 0.125 -0.532 0.886 1.041 sum 3.662 -2.741 -31.431 31.762 Atomic orbital electron populations 1.21662 0.95114 1.01039 1.00787 1.20889 0.96160 0.98960 0.92988 0.92962 1.19555 0.95894 0.95674 0.93285 1.21451 1.34245 1.08713 0.91205 0.94639 1.25991 0.96988 1.00970 0.95541 1.70072 1.49196 1.41571 0.98688 0.85699 0.79383 0.79608 0.78206 1.19211 1.17196 1.21171 1.21854 0.99851 0.94458 0.88963 1.60392 1.20199 1.50617 1.01271 1.22203 1.00549 0.95553 0.88677 1.22089 1.02170 0.94491 0.87208 1.58678 1.06598 1.52326 1.04223 1.18632 0.88289 0.95837 0.97203 1.21349 0.95115 0.98766 1.00428 1.21251 0.93744 1.00017 0.99090 1.21343 1.00846 0.97107 0.96552 1.21261 0.93516 0.98834 0.99618 1.20251 0.94390 0.98247 1.00560 1.20568 0.95640 0.97448 0.97724 1.22239 0.96276 0.97950 1.02396 1.21824 0.94639 0.94350 0.91638 0.89532 1.21990 0.93352 1.02397 1.02898 0.93196 0.94605 0.91475 0.96746 0.96481 0.92677 0.92057 0.94896 0.83543 0.91277 0.94567 0.88198 0.94498 0.85921 0.84860 0.84266 0.84332 0.89774 0.89441 0.92456 0.88603 0.91968 0.89980 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.63 8.77 71.98 0.63 -4.00 16 2 C -0.07 -2.78 2.55 -10.79 -0.03 -2.81 16 3 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 4 C -0.01 -0.29 3.52 29.85 0.10 -0.19 16 5 C -0.52 -30.16 8.96 25.60 0.23 -29.93 16 6 H 0.04 2.27 7.30 -2.91 -0.02 2.25 16 7 C 0.00 0.07 5.47 84.65 0.46 0.53 16 8 N -0.95 -60.85 13.96 21.44 0.30 -60.55 16 9 Si 0.95 45.13 27.46 68.60 1.88 47.02 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.25 -11.04 6.55 99.48 0.65 -10.39 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 C 0.08 2.48 5.14 86.30 0.44 2.92 16 14 N -0.69 -18.71 6.50 -513.87 -3.34 -22.05 16 15 C 0.06 1.41 4.37 86.30 0.38 1.79 16 16 C 0.07 1.34 4.40 86.30 0.38 1.72 16 17 N -0.50 -9.78 4.44 -671.90 -2.99 -12.76 16 18 C 0.10 2.07 5.06 38.30 0.19 2.27 16 19 C -0.14 -3.04 7.53 22.50 0.17 -2.87 16 20 C -0.12 -2.43 10.04 22.19 0.22 -2.21 16 21 C -0.14 -2.47 10.05 22.24 0.22 -2.25 16 22 C -0.11 -1.96 9.63 22.31 0.21 -1.75 16 23 C -0.13 -2.48 5.74 -19.71 -0.11 -2.60 16 24 C -0.08 -1.05 5.81 29.89 0.17 -0.87 16 25 C -0.15 -1.97 5.33 30.74 0.16 -1.81 16 26 C 0.08 1.23 2.83 45.13 0.13 1.36 16 27 H 0.09 1.30 8.11 -2.38 -0.02 1.28 16 28 C -0.15 -1.79 8.57 71.98 0.62 -1.17 16 29 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.03 1.50 6.95 -2.39 -0.02 1.48 16 31 H 0.07 1.95 6.68 -2.39 -0.02 1.93 16 32 H 0.01 0.68 7.21 -2.38 -0.02 0.66 16 33 H 0.02 0.78 7.56 -2.39 -0.02 0.76 16 34 H 0.26 15.76 8.31 -92.70 -0.77 14.98 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.35 8.44 6.98 -89.69 -0.63 7.82 16 38 H 0.07 1.80 5.56 -2.39 -0.01 1.79 16 39 H 0.04 0.86 7.91 -2.38 -0.02 0.84 16 40 H 0.10 1.78 5.42 -2.39 -0.01 1.77 16 41 H 0.04 0.85 6.98 -2.39 -0.02 0.83 16 42 H 0.12 2.76 6.17 -2.91 -0.02 2.74 16 43 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 45 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 46 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.06 0.92 6.68 -2.39 -0.02 0.91 16 49 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.06 0.78 6.06 -2.38 -0.01 0.77 16 51 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -67.79 388.22 0.66 -67.13 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.20 Total: 23.07 kcal Atomic # 6 Polarization: -46.45 SS G_CDS: 4.60 Total: -41.85 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -6.03 Total: -95.36 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Total: -67.79 0.66 -67.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331052754.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.261 kcal (2) G-P(sol) polarization free energy of solvation -67.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds