Wall clock time and date at job start Tue Mar 31 2020 11:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47093 * 2 1 4 4 C 1.52998 * 109.46872 * 239.99755 * 2 1 3 5 5 C 1.50702 * 109.47052 * 65.00124 * 4 2 1 6 6 H 1.07993 * 120.00147 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99920 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99985 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99982 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46965 * 60.00116 * 9 7 5 11 11 H 1.48494 * 109.47146 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47101 * 300.00122 * 9 7 5 13 13 C 1.53003 * 109.47249 * 119.99678 * 2 1 3 14 14 N 1.46895 * 109.47087 * 295.00465 * 13 2 1 15 15 C 1.46910 * 110.99865 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.46830 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.46663 * 185.17665 * 16 15 14 18 18 C 1.39410 * 111.00348 * 61.37959 * 17 16 15 19 19 C 1.39614 * 117.65615 * 34.25768 * 18 17 16 20 20 C 1.37812 * 120.41778 * 179.72178 * 19 18 17 21 21 C 1.38314 * 119.95055 * 359.94484 * 20 19 18 22 22 C 1.38049 * 119.89040 * 0.13884 * 21 20 19 23 23 C 1.38373 * 122.95012 * 214.18706 * 18 17 16 24 24 C 1.50797 * 122.01258 * 0.84977 * 23 18 17 25 25 C 1.53360 * 109.76403 * 344.33180 * 24 23 18 26 26 C 1.46432 * 111.00028 * 294.64858 * 17 16 15 27 27 H 1.08997 * 109.60170 * 59.19937 * 26 17 16 28 28 C 1.52993 * 109.60696 * 298.86883 * 26 17 16 29 29 H 1.08996 * 109.47431 * 60.00109 * 1 2 3 30 30 H 1.09001 * 109.46946 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47046 * 299.99667 * 1 2 3 32 32 H 1.09004 * 109.46780 * 185.00157 * 4 2 1 33 33 H 1.08996 * 109.47453 * 304.99669 * 4 2 1 34 34 H 0.97001 * 120.00162 * 179.97438 * 8 7 5 35 35 H 1.08990 * 109.47038 * 174.99946 * 13 2 1 36 36 H 1.09005 * 109.47008 * 54.99790 * 13 2 1 37 37 H 1.00896 * 111.00547 * 56.04484 * 14 13 2 38 38 H 1.09002 * 109.46953 * 59.99634 * 15 14 13 39 39 H 1.09001 * 109.46592 * 299.99502 * 15 14 13 40 40 H 1.09000 * 109.47795 * 65.17510 * 16 15 14 41 41 H 1.09005 * 109.47213 * 305.17213 * 16 15 14 42 42 H 1.08003 * 119.79327 * 359.69790 * 19 18 17 43 43 H 1.07998 * 120.02536 * 179.97438 * 20 19 18 44 44 H 1.07997 * 120.05461 * 180.15658 * 21 20 19 45 45 H 1.08002 * 119.75766 * 180.02562 * 22 21 20 46 46 H 1.09004 * 109.43681 * 104.35301 * 24 23 18 47 47 H 1.09005 * 109.44239 * 224.27093 * 24 23 18 48 48 H 1.09004 * 109.68742 * 287.68927 * 25 24 23 49 49 H 1.08999 * 110.00765 * 166.80491 * 25 24 23 50 50 H 1.08994 * 109.47599 * 60.32826 * 28 26 17 51 51 H 1.09004 * 109.46952 * 180.32860 * 28 26 17 52 52 H 1.09003 * 109.47497 * 300.32802 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9932 -0.4018 -3.7283 8 7 2.6763 -1.5189 -3.8511 9 14 1.4984 0.5625 -5.2497 10 1 2.0895 1.9233 -5.1871 11 1 1.9934 -0.1375 -6.4621 12 1 0.0183 0.6680 -5.3092 13 6 2.0401 -0.7212 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1259 -0.6265 3.6672 16 6 1.7034 0.1917 4.8891 17 7 2.2822 -0.4039 6.1009 18 6 3.6752 -0.3921 6.0472 19 6 4.2899 0.6865 5.4084 20 6 5.6638 0.7586 5.3274 21 6 6.4417 -0.2414 5.8822 22 6 5.8394 -1.3112 6.5135 23 6 4.4580 -1.3926 6.5956 24 6 3.8562 -2.5921 7.2833 25 6 2.3819 -2.3194 7.6059 26 6 1.7273 -1.7364 6.3472 27 1 1.9352 -2.3824 5.4943 28 6 0.2153 -1.6324 6.5560 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 2.9235 -1.8419 -4.7317 35 1 3.1263 -0.7994 1.2056 36 1 1.6054 -1.7198 1.2953 37 1 0.6529 0.1793 2.4753 38 1 3.2128 -0.7036 3.6401 39 1 1.6922 -1.6245 3.7301 40 1 0.6163 0.1921 4.9681 41 1 2.0603 1.2160 4.7817 42 1 3.6850 1.4691 4.9747 43 1 6.1327 1.5956 4.8315 44 1 7.5185 -0.1853 5.8219 45 1 6.4489 -2.0907 6.9463 46 1 3.9280 -3.4600 6.6277 47 1 4.3983 -2.7901 8.2080 48 1 2.3115 -1.6023 8.4238 49 1 1.8832 -3.2477 7.8845 50 1 -0.2469 -1.2125 5.6627 51 1 -0.1945 -2.6247 6.7449 52 1 0.0099 -0.9860 7.4093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331052755.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:51 Heat of formation + Delta-G solvation = 11.980032 kcal Electronic energy + Delta-G solvation = -26783.000683 eV Core-core repulsion = 23360.152213 eV Total energy + Delta-G solvation = -3422.848470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.06287 -37.69557 -36.84881 -35.10494 -33.54054 -31.94804 -31.89651 -30.02116 -28.49596 -27.52224 -26.75371 -25.23406 -23.95302 -23.23370 -22.29700 -22.00132 -21.18755 -19.38618 -18.90112 -17.32938 -16.67857 -16.48014 -15.91556 -15.38089 -15.10743 -14.70900 -14.56480 -14.24316 -14.17339 -13.81266 -13.64521 -13.51429 -13.40285 -12.85246 -12.70691 -12.59629 -12.36757 -12.24608 -12.05730 -12.00346 -11.71259 -11.55837 -11.41537 -11.32821 -11.13691 -10.88080 -10.77389 -10.66185 -10.58538 -10.34592 -10.23715 -9.93358 -9.71363 -9.15691 -8.97355 -8.79498 -8.32330 -8.18991 -7.74147 -5.97003 -3.98363 1.31463 1.34512 3.34754 3.37927 3.39121 3.41632 3.79277 4.28133 4.44423 4.50961 4.51698 4.55801 4.75399 4.93143 4.95452 5.03500 5.07882 5.13606 5.16454 5.23620 5.36741 5.38617 5.42755 5.45013 5.54295 5.57237 5.61444 5.66895 5.73466 5.77835 5.81535 5.86009 5.93330 5.96930 6.03988 6.06693 6.15723 6.24431 6.37080 6.45208 6.53065 6.54845 6.68634 6.88473 6.95376 7.09787 7.16620 7.21272 7.32878 7.61223 7.70163 7.86017 8.03033 8.46664 9.07788 9.64948 11.14526 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017354 B = 0.002586 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.087576 B =10823.905455 C =11635.882237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.084 4.084 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.066 3.934 14 N -0.684 5.684 15 C 0.026 3.974 16 C 0.050 3.950 17 N -0.484 5.484 18 C 0.132 3.868 19 C -0.153 4.153 20 C -0.095 4.095 21 C -0.151 4.151 22 C -0.096 4.096 23 C -0.130 4.130 24 C -0.078 4.078 25 C -0.116 4.116 26 C 0.078 3.922 27 H 0.057 0.943 28 C -0.148 4.148 29 H 0.063 0.937 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.015 0.985 33 H 0.013 0.987 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.022 0.978 37 H 0.337 0.663 38 H 0.075 0.925 39 H 0.025 0.975 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.130 0.870 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.060 0.940 51 H 0.064 0.936 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 -0.821 25.999 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.062 4.062 14 N -0.316 5.316 15 C -0.105 4.105 16 C -0.076 4.076 17 N -0.197 5.197 18 C 0.033 3.967 19 C -0.173 4.173 20 C -0.114 4.114 21 C -0.170 4.170 22 C -0.115 4.115 23 C -0.133 4.133 24 C -0.115 4.115 25 C -0.154 4.154 26 C -0.029 4.029 27 H 0.074 0.926 28 C -0.205 4.205 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.155 0.845 38 H 0.094 0.906 39 H 0.043 0.957 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.148 0.852 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.136 0.864 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.094 0.906 50 H 0.079 0.921 51 H 0.083 0.917 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.105 -0.255 26.226 26.251 hybrid contribution -0.515 -0.745 -1.504 1.756 sum 0.591 -1.000 24.722 24.749 Atomic orbital electron populations 1.21740 0.96678 1.00382 1.00282 1.21222 0.94849 1.00108 0.94088 0.91586 1.19100 0.96122 0.95325 0.90356 1.21199 1.34712 1.08293 0.90988 0.92600 1.25023 0.95321 0.95094 0.99099 1.69958 1.39022 1.21224 1.23489 0.86685 0.78848 0.80158 0.82473 1.20246 1.21372 1.20314 1.22129 1.00330 0.94324 0.89458 1.60523 1.19386 1.50432 1.01227 1.22598 1.01498 0.95548 0.90848 1.22426 1.00197 0.99685 0.85244 1.58399 1.03913 1.22203 1.35202 1.18537 0.87755 0.94206 0.96212 1.21233 0.95180 0.98795 1.02099 1.20968 0.93450 0.98602 0.98333 1.20972 0.99659 0.95422 1.00971 1.20902 0.93465 0.98070 0.99014 1.19470 0.93503 0.96220 1.04093 1.20560 0.95526 0.95485 0.99924 1.21813 0.94934 1.01185 0.97431 1.21718 0.95185 0.87952 0.98034 0.92552 1.21901 0.93631 1.02306 1.02663 0.91815 0.94101 0.94974 0.96699 0.96824 0.93036 0.91565 0.95989 0.84466 0.90634 0.95700 0.89774 0.88682 0.85224 0.86018 0.86361 0.86395 0.90962 0.90656 0.90651 0.90578 0.92120 0.91740 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.77 37.16 0.33 -2.15 16 2 C -0.08 -1.72 2.55 -90.62 -0.23 -1.95 16 3 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.74 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.07 1.17 5.14 -3.83 -0.02 1.15 16 14 N -0.68 -9.95 6.50 -113.78 -0.74 -10.69 16 15 C 0.03 0.33 5.00 -3.82 -0.02 0.31 16 16 C 0.05 0.54 4.88 -3.83 -0.02 0.52 16 17 N -0.48 -5.14 4.51 -163.73 -0.74 -5.88 16 18 C 0.13 1.53 4.81 -83.85 -0.40 1.13 16 19 C -0.15 -1.81 7.97 -39.22 -0.31 -2.12 16 20 C -0.09 -1.06 10.04 -39.71 -0.40 -1.45 16 21 C -0.15 -1.58 10.05 -39.62 -0.40 -1.98 16 22 C -0.10 -0.99 9.63 -39.51 -0.38 -1.37 16 23 C -0.13 -1.41 5.74 -104.38 -0.60 -2.01 16 24 C -0.08 -0.67 5.81 -27.65 -0.16 -0.83 16 25 C -0.12 -0.93 5.52 -26.35 -0.15 -1.08 16 26 C 0.08 0.72 2.08 -67.78 -0.14 0.58 16 27 H 0.06 0.59 6.49 -51.93 -0.34 0.25 16 28 C -0.15 -1.14 9.01 37.15 0.33 -0.81 16 29 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 32 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.34 4.53 6.98 -39.29 -0.27 4.26 16 38 H 0.08 1.09 6.35 -51.93 -0.33 0.76 16 39 H 0.02 0.32 6.77 -51.93 -0.35 -0.03 16 40 H 0.08 0.81 6.07 -51.93 -0.32 0.49 16 41 H 0.10 1.05 6.00 -51.93 -0.31 0.74 16 42 H 0.13 1.49 5.86 -52.48 -0.31 1.18 16 43 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.49 6.33 -51.93 -0.33 0.16 16 51 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -30.35 392.19 -12.04 -42.39 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -9.11 Total: 2.62 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -3.08 Total: -24.69 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.74 Total: -43.01 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.35 -12.04 -42.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331052755.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.375 kcal (2) G-P(sol) polarization free energy of solvation -30.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds