Wall clock time and date at job start Tue Mar 31 2020 11:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47093 * 2 1 4 4 C 1.52998 * 109.46872 * 239.99755 * 2 1 3 5 5 C 1.50702 * 109.47052 * 65.00124 * 4 2 1 6 6 H 1.07993 * 120.00147 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99920 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99985 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99982 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.46965 * 60.00116 * 9 7 5 11 11 H 1.48494 * 109.47146 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47101 * 300.00122 * 9 7 5 13 13 C 1.53003 * 109.47249 * 119.99678 * 2 1 3 14 14 N 1.46895 * 109.47087 * 295.00465 * 13 2 1 15 15 C 1.46910 * 110.99865 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.46830 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.46663 * 185.17665 * 16 15 14 18 18 C 1.39410 * 111.00348 * 61.37959 * 17 16 15 19 19 C 1.39614 * 117.65615 * 34.25768 * 18 17 16 20 20 C 1.37812 * 120.41778 * 179.72178 * 19 18 17 21 21 C 1.38314 * 119.95055 * 359.94484 * 20 19 18 22 22 C 1.38049 * 119.89040 * 0.13884 * 21 20 19 23 23 C 1.38373 * 122.95012 * 214.18706 * 18 17 16 24 24 C 1.50797 * 122.01258 * 0.84977 * 23 18 17 25 25 C 1.53360 * 109.76403 * 344.33180 * 24 23 18 26 26 C 1.46432 * 111.00028 * 294.64858 * 17 16 15 27 27 H 1.08997 * 109.60170 * 59.19937 * 26 17 16 28 28 C 1.52993 * 109.60696 * 298.86883 * 26 17 16 29 29 H 1.08996 * 109.47431 * 60.00109 * 1 2 3 30 30 H 1.09001 * 109.46946 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47046 * 299.99667 * 1 2 3 32 32 H 1.09004 * 109.46780 * 185.00157 * 4 2 1 33 33 H 1.08996 * 109.47453 * 304.99669 * 4 2 1 34 34 H 0.97001 * 120.00162 * 179.97438 * 8 7 5 35 35 H 1.08990 * 109.47038 * 174.99946 * 13 2 1 36 36 H 1.09005 * 109.47008 * 54.99790 * 13 2 1 37 37 H 1.00896 * 111.00547 * 56.04484 * 14 13 2 38 38 H 1.09002 * 109.46953 * 59.99634 * 15 14 13 39 39 H 1.09001 * 109.46592 * 299.99502 * 15 14 13 40 40 H 1.09000 * 109.47795 * 65.17510 * 16 15 14 41 41 H 1.09005 * 109.47213 * 305.17213 * 16 15 14 42 42 H 1.08003 * 119.79327 * 359.69790 * 19 18 17 43 43 H 1.07998 * 120.02536 * 179.97438 * 20 19 18 44 44 H 1.07997 * 120.05461 * 180.15658 * 21 20 19 45 45 H 1.08002 * 119.75766 * 180.02562 * 22 21 20 46 46 H 1.09004 * 109.43681 * 104.35301 * 24 23 18 47 47 H 1.09005 * 109.44239 * 224.27093 * 24 23 18 48 48 H 1.09004 * 109.68742 * 287.68927 * 25 24 23 49 49 H 1.08999 * 110.00765 * 166.80491 * 25 24 23 50 50 H 1.08994 * 109.47599 * 60.32826 * 28 26 17 51 51 H 1.09004 * 109.46952 * 180.32860 * 28 26 17 52 52 H 1.09003 * 109.47497 * 300.32802 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9932 -0.4018 -3.7283 8 7 2.6763 -1.5189 -3.8511 9 14 1.4984 0.5625 -5.2497 10 1 2.0895 1.9233 -5.1871 11 1 1.9934 -0.1375 -6.4621 12 1 0.0183 0.6680 -5.3092 13 6 2.0401 -0.7212 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1259 -0.6265 3.6672 16 6 1.7034 0.1917 4.8891 17 7 2.2822 -0.4039 6.1009 18 6 3.6752 -0.3921 6.0472 19 6 4.2899 0.6865 5.4084 20 6 5.6638 0.7586 5.3274 21 6 6.4417 -0.2414 5.8822 22 6 5.8394 -1.3112 6.5135 23 6 4.4580 -1.3926 6.5956 24 6 3.8562 -2.5921 7.2833 25 6 2.3819 -2.3194 7.6059 26 6 1.7273 -1.7364 6.3472 27 1 1.9352 -2.3824 5.4943 28 6 0.2153 -1.6324 6.5560 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1263 -0.7995 -1.2055 33 1 1.6054 -1.7198 -1.2951 34 1 2.9235 -1.8419 -4.7317 35 1 3.1263 -0.7994 1.2056 36 1 1.6054 -1.7198 1.2953 37 1 0.6529 0.1793 2.4753 38 1 3.2128 -0.7036 3.6401 39 1 1.6922 -1.6245 3.7301 40 1 0.6163 0.1921 4.9681 41 1 2.0603 1.2160 4.7817 42 1 3.6850 1.4691 4.9747 43 1 6.1327 1.5956 4.8315 44 1 7.5185 -0.1853 5.8219 45 1 6.4489 -2.0907 6.9463 46 1 3.9280 -3.4600 6.6277 47 1 4.3983 -2.7901 8.2080 48 1 2.3115 -1.6023 8.4238 49 1 1.8832 -3.2477 7.8845 50 1 -0.2469 -1.2125 5.6627 51 1 -0.1945 -2.6247 6.7449 52 1 0.0099 -0.9860 7.4093 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331052755.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:50 Heat of formation + Delta-G solvation = -4.682557 kcal Electronic energy + Delta-G solvation = -26783.723227 eV Core-core repulsion = 23360.152213 eV Total energy + Delta-G solvation = -3423.571014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85703 -38.75085 -38.04317 -36.20864 -35.04863 -33.69669 -32.66463 -30.88733 -29.66320 -28.66959 -28.18797 -26.66664 -25.05271 -24.26676 -23.65856 -22.97372 -22.05402 -20.68205 -20.05978 -18.55155 -18.13876 -17.45722 -17.16015 -16.62140 -16.24755 -16.04019 -15.63625 -15.48378 -15.01975 -14.91850 -14.82442 -14.41600 -14.31450 -14.24579 -13.93491 -13.67185 -13.53688 -13.34274 -13.23651 -13.12529 -12.86918 -12.75685 -12.67888 -12.56251 -12.34525 -12.23923 -12.10001 -12.00721 -11.91889 -11.54000 -11.37576 -11.35243 -11.09835 -11.03633 -10.70385 -10.54110 -9.61513 -9.43095 -8.57679 -8.18224 -6.27853 0.48811 0.51063 1.39753 1.42744 1.50379 2.41383 2.56633 2.97615 3.15088 3.20903 3.67957 3.76034 3.83607 3.96859 4.04204 4.10099 4.19747 4.24210 4.24776 4.30081 4.40088 4.42186 4.44887 4.47884 4.56623 4.66694 4.70198 4.75468 4.78397 4.83946 4.85720 4.92225 4.99101 4.99638 5.01050 5.08385 5.19853 5.22395 5.23763 5.32582 5.36298 5.39633 5.47144 5.53074 5.57582 5.70187 5.76691 5.86458 5.88052 5.97708 6.14112 6.28980 6.39389 6.46944 6.87982 7.40573 8.93810 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017354 B = 0.002586 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.087576 B =10823.905455 C =11635.882237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.074 4.074 3 H 0.058 0.942 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.063 0.937 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.080 3.920 14 N -0.680 5.680 15 C 0.037 3.963 16 C 0.059 3.941 17 N -0.484 5.484 18 C 0.116 3.884 19 C -0.169 4.169 20 C -0.110 4.110 21 C -0.159 4.159 22 C -0.103 4.103 23 C -0.142 4.142 24 C -0.078 4.078 25 C -0.111 4.111 26 C 0.073 3.927 27 H 0.042 0.958 28 C -0.143 4.143 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.069 0.931 32 H -0.017 1.017 33 H -0.011 1.011 34 H 0.262 0.738 35 H 0.049 0.951 36 H 0.020 0.980 37 H 0.348 0.652 38 H 0.055 0.945 39 H 0.026 0.974 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.127 0.873 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.096 0.904 50 H 0.057 0.943 51 H 0.078 0.922 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.471 -0.420 27.232 27.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.093 4.093 3 H 0.076 0.924 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.190 1.190 13 C -0.049 4.049 14 N -0.312 5.312 15 C -0.094 4.094 16 C -0.067 4.067 17 N -0.197 5.197 18 C 0.017 3.983 19 C -0.190 4.190 20 C -0.128 4.128 21 C -0.178 4.178 22 C -0.122 4.122 23 C -0.145 4.145 24 C -0.115 4.115 25 C -0.149 4.149 26 C -0.033 4.033 27 H 0.060 0.940 28 C -0.201 4.201 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.001 0.999 33 H 0.007 0.993 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.168 0.832 38 H 0.074 0.926 39 H 0.044 0.956 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.144 0.856 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.092 0.908 47 H 0.109 0.891 48 H 0.090 0.910 49 H 0.115 0.885 50 H 0.076 0.924 51 H 0.097 0.903 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.113 0.158 27.484 27.485 hybrid contribution -0.073 -0.901 -1.843 2.053 sum -0.186 -0.743 25.641 25.652 Atomic orbital electron populations 1.21647 0.94632 1.00685 1.01337 1.21011 0.96465 0.98961 0.92896 0.92367 1.18993 0.94021 0.94579 0.92827 1.21613 1.34554 1.08635 0.91993 0.91909 1.25977 0.95217 0.96096 1.02734 1.70102 1.40272 1.23003 1.24368 0.85545 0.79012 0.78740 0.78043 1.19265 1.21053 1.19038 1.21796 0.99139 0.94188 0.89771 1.60402 1.20207 1.49940 1.00698 1.22508 1.00209 0.95917 0.90773 1.22343 1.01034 0.98981 0.84371 1.58477 1.03524 1.23053 1.34628 1.18735 0.88410 0.94511 0.96645 1.21341 0.95640 0.99161 1.02825 1.21200 0.93515 0.99364 0.98745 1.21264 1.00668 0.95271 1.00636 1.21230 0.93680 0.98504 0.98751 1.19842 0.93938 0.96770 1.03963 1.20622 0.96035 0.94459 1.00388 1.21816 0.94607 1.01934 0.96544 1.21831 0.96313 0.87021 0.98128 0.93960 1.21882 0.92336 1.03246 1.02601 0.93444 0.94159 0.91177 0.99871 0.99305 0.92930 0.93287 0.96142 0.83237 0.92610 0.95606 0.88163 0.89093 0.85568 0.85121 0.84610 0.84334 0.90752 0.89132 0.91012 0.88518 0.92397 0.90321 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.51 8.77 71.98 0.63 -3.88 16 2 C -0.07 -3.08 2.55 -10.79 -0.03 -3.10 16 3 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 4 C 0.03 1.79 4.45 29.85 0.13 1.92 16 5 C -0.53 -30.26 8.41 25.60 0.22 -30.04 16 6 H 0.06 3.42 7.06 -2.91 -0.02 3.40 16 7 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 8 N -0.94 -58.00 13.29 21.45 0.28 -57.71 16 9 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 C 0.08 2.87 5.14 86.31 0.44 3.31 16 14 N -0.68 -19.16 6.50 -513.88 -3.34 -22.49 16 15 C 0.04 0.92 5.00 86.30 0.43 1.35 16 16 C 0.06 1.19 4.88 86.30 0.42 1.61 16 17 N -0.48 -9.84 4.51 -671.92 -3.03 -12.87 16 18 C 0.12 2.66 4.81 38.30 0.18 2.85 16 19 C -0.17 -4.06 7.97 22.50 0.18 -3.88 16 20 C -0.11 -2.46 10.04 22.19 0.22 -2.24 16 21 C -0.16 -3.26 10.05 22.24 0.22 -3.03 16 22 C -0.10 -2.03 9.63 22.32 0.21 -1.82 16 23 C -0.14 -2.98 5.74 -19.71 -0.11 -3.09 16 24 C -0.08 -1.21 5.81 30.00 0.17 -1.04 16 25 C -0.11 -1.57 5.52 30.84 0.17 -1.40 16 26 C 0.07 1.25 2.08 45.13 0.09 1.35 16 27 H 0.04 0.84 6.49 -2.39 -0.02 0.83 16 28 C -0.14 -1.91 9.01 71.98 0.65 -1.26 16 29 H 0.05 1.85 6.95 -2.39 -0.02 1.83 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 1.97 6.68 -2.39 -0.02 1.96 16 32 H -0.02 -1.01 8.14 -2.38 -0.02 -1.03 16 33 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 34 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.35 8.59 6.98 -89.70 -0.63 7.96 16 38 H 0.06 1.64 6.35 -2.39 -0.02 1.62 16 39 H 0.03 0.65 6.77 -2.39 -0.02 0.63 16 40 H 0.10 1.72 6.07 -2.39 -0.01 1.71 16 41 H 0.09 1.94 6.00 -2.38 -0.01 1.93 16 42 H 0.13 2.98 5.86 -2.91 -0.02 2.96 16 43 H 0.13 2.54 8.06 -2.91 -0.02 2.51 16 44 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 45 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 46 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 48 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 49 H 0.10 0.96 8.14 -2.39 -0.02 0.95 16 50 H 0.06 0.80 6.33 -2.39 -0.02 0.79 16 51 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 52 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -66.49 392.19 0.91 -65.58 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.26 Total: 22.83 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 4.71 Total: -42.12 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -6.08 Total: -93.08 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -66.49 0.91 -65.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331052755.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.898 kcal (2) G-P(sol) polarization free energy of solvation -66.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds