Wall clock time and date at job start Tue Mar 31 2020 11:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46764 * 2 1 4 4 C 1.53005 * 109.46975 * 119.99611 * 2 1 3 5 5 C 1.52994 * 109.46917 * 174.02193 * 4 2 1 6 6 H 1.09002 * 109.48943 * 186.70829 * 5 4 2 7 7 C 1.53043 * 109.49264 * 306.75726 * 5 4 2 8 8 N 1.46956 * 109.36707 * 178.34621 * 7 5 4 9 9 C 1.46902 * 110.99973 * 176.82736 * 8 7 5 10 10 C 1.46955 * 110.89904 * 300.71167 * 8 7 5 11 11 C 1.53045 * 109.36337 * 59.30572 * 10 8 7 12 12 N 1.46954 * 109.36688 * 301.59817 * 11 10 8 13 13 C 1.46902 * 111.00060 * 183.18754 * 12 11 10 14 14 C 1.50703 * 109.47163 * 50.72569 * 13 12 11 15 15 C 1.38633 * 119.74874 * 269.72391 * 14 13 12 16 16 C 1.37620 * 120.24718 * 179.76038 * 15 14 13 17 17 C 1.40712 * 119.74111 * 0.48967 * 16 15 14 18 18 C 1.41403 * 120.24394 * 179.78620 * 17 16 15 19 19 H 1.07997 * 120.00535 * 205.75946 * 18 17 16 20 20 C 1.39946 * 119.99832 * 25.75746 * 18 17 16 21 21 N 1.30826 * 120.00064 * 15.32133 * 20 18 17 22 22 Si 1.86795 * 120.00362 * 195.32168 * 20 18 17 23 23 H 1.48501 * 109.46878 * 59.99753 * 22 20 18 24 24 H 1.48499 * 109.47471 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46852 * 300.00118 * 22 20 18 26 26 C 1.40716 * 119.51670 * 359.76531 * 17 16 15 27 27 C 1.37613 * 119.74105 * 0.02562 * 26 17 16 28 28 H 1.09000 * 109.47633 * 300.00281 * 1 2 3 29 29 H 1.08997 * 109.47281 * 60.01075 * 1 2 3 30 30 H 1.09004 * 109.46920 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47110 * 239.99758 * 2 1 3 32 32 H 1.09000 * 109.46903 * 307.86398 * 3 2 1 33 33 H 1.08996 * 109.47308 * 67.86531 * 3 2 1 34 34 H 1.08995 * 109.46682 * 187.86737 * 3 2 1 35 35 H 1.09000 * 109.46506 * 294.02407 * 4 2 1 36 36 H 1.08999 * 109.46699 * 54.02120 * 4 2 1 37 37 H 1.09003 * 109.48996 * 298.33706 * 7 5 4 38 38 H 1.09005 * 109.49167 * 58.39520 * 7 5 4 39 39 H 1.09001 * 109.47334 * 187.77133 * 9 8 7 40 40 H 1.08999 * 109.47333 * 307.78154 * 9 8 7 41 41 H 1.09009 * 109.46852 * 67.77914 * 9 8 7 42 42 H 1.09003 * 109.48522 * 299.33877 * 10 8 7 43 43 H 1.09001 * 109.49174 * 179.27697 * 10 8 7 44 44 H 1.09002 * 109.49106 * 181.63236 * 11 10 8 45 45 H 1.09000 * 109.50842 * 61.57918 * 11 10 8 46 46 H 1.08996 * 109.47211 * 170.72780 * 13 12 11 47 47 H 1.08997 * 109.47096 * 290.72737 * 13 12 11 48 48 H 1.08000 * 119.87827 * 0.02562 * 15 14 13 49 49 H 1.07993 * 120.12564 * 180.23584 * 16 15 14 50 50 H 0.96993 * 120.00447 * 179.97438 * 21 20 18 51 51 H 1.08001 * 120.12888 * 179.97438 * 26 17 16 52 52 H 1.08005 * 119.87396 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5626 -0.8526 1.1765 6 1 3.9144 -1.4685 2.0041 7 6 3.9558 -1.5067 -0.1501 8 7 5.4202 -1.5955 -0.2344 9 6 5.8359 -2.2869 -1.4621 10 6 6.0321 -0.2622 -0.1479 11 6 5.6389 0.3915 1.1789 12 7 4.1745 0.4808 1.2630 13 6 3.7588 1.1721 2.4907 14 6 4.5072 2.4746 2.6117 15 6 5.7199 2.5114 3.2825 16 6 6.4143 3.6942 3.3949 17 6 5.8839 4.8710 2.8347 18 6 6.5862 6.0930 2.9479 19 1 6.0497 7.0296 2.9124 20 6 7.9767 6.0889 3.1059 21 7 8.6606 5.0027 2.8527 22 14 8.8564 7.6341 3.6784 23 1 8.3446 8.0284 5.0154 24 1 10.3153 7.3702 3.7643 25 1 8.6087 8.7322 2.7098 26 6 4.6496 4.8228 2.1608 27 6 3.9747 3.6280 2.0568 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5136 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.5663 1.9953 -0.8113 33 1 1.7960 1.9142 0.9519 34 1 3.1208 1.4457 -0.1407 35 1 1.7666 -0.1492 2.1360 36 1 1.5919 -1.7133 1.3045 37 1 3.5268 -2.5074 -0.2034 38 1 3.5800 -0.9051 -0.9777 39 1 6.9115 -2.4614 -1.4344 40 1 5.3146 -3.2413 -1.5358 41 1 5.5900 -1.6708 -2.3271 42 1 5.6800 0.3538 -0.9753 43 1 7.1169 -0.3558 -0.1998 44 1 6.0679 1.3921 1.2326 45 1 6.0146 -0.2101 2.0065 46 1 2.6878 1.3708 2.4510 47 1 3.9801 0.5444 3.3538 48 1 6.1232 1.6076 3.7148 49 1 7.3606 3.7199 3.9145 50 1 9.6244 4.9998 2.9618 51 1 4.2331 5.7202 1.7275 52 1 3.0269 3.5887 1.5403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364814732.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:10 Heat of formation + Delta-G solvation = 14.040465 kcal Electronic energy + Delta-G solvation = -28039.016728 eV Core-core repulsion = 24616.257605 eV Total energy + Delta-G solvation = -3422.759123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.12153 -39.29287 -37.37240 -36.28661 -35.14537 -32.52184 -31.86216 -31.18292 -29.82722 -27.78896 -27.52718 -27.48078 -25.45952 -24.07435 -22.94863 -22.70531 -21.53774 -21.44100 -19.69475 -19.17739 -17.25168 -17.13487 -16.71180 -16.31206 -15.97085 -15.79632 -15.69057 -15.35415 -15.15699 -14.92050 -14.87279 -14.31259 -14.14988 -13.82951 -13.69262 -13.39809 -13.33604 -13.26123 -12.99334 -12.83725 -12.76856 -12.69664 -12.53946 -12.51931 -12.29022 -12.20526 -12.11060 -11.81268 -11.70292 -11.41174 -11.29789 -11.28525 -11.15749 -10.99116 -10.88396 -9.31610 -9.28464 -9.19356 -8.87590 -8.59010 -6.31134 0.97354 1.20075 1.37524 1.48314 1.52805 2.21380 2.70013 2.99980 3.14112 3.76730 3.85277 3.99933 4.01839 4.22706 4.24750 4.26921 4.31600 4.36249 4.49193 4.50473 4.58068 4.61612 4.63964 4.70521 4.73505 4.82314 4.83505 4.90626 4.93482 4.98152 5.00748 5.03644 5.07460 5.14407 5.14760 5.18535 5.22002 5.28415 5.38372 5.42751 5.47784 5.51260 5.68669 5.74641 5.94565 5.98230 6.04008 6.05261 6.13730 6.22631 6.34339 6.39015 6.44029 6.74146 6.98006 7.07661 8.36507 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016985 B = 0.003580 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.155159 B = 7820.248750 C = 8868.441529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.083 4.083 3 C -0.151 4.151 4 C -0.104 4.104 5 C 0.085 3.915 6 H 0.035 0.965 7 C 0.065 3.935 8 N -0.556 5.556 9 C 0.027 3.973 10 C 0.067 3.933 11 C 0.062 3.938 12 N -0.514 5.514 13 C 0.123 3.877 14 C -0.190 4.190 15 C -0.094 4.094 16 C -0.185 4.185 17 C 0.081 3.919 18 C -0.505 4.505 19 H 0.072 0.928 20 C 0.036 3.964 21 N -0.828 5.828 22 Si 0.979 3.021 23 H -0.261 1.261 24 H -0.268 1.268 25 H -0.261 1.261 26 C -0.243 4.243 27 C -0.069 4.069 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.041 0.959 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.025 0.975 42 H 0.031 0.969 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.023 0.977 46 H 0.089 0.911 47 H 0.022 0.978 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.286 0.714 51 H 0.091 0.909 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 -13.736 -6.010 17.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.208 4.208 4 C -0.142 4.142 5 C -0.023 4.023 6 H 0.053 0.947 7 C -0.063 4.063 8 N -0.281 5.281 9 C -0.121 4.121 10 C -0.062 4.062 11 C -0.066 4.066 12 N -0.239 5.239 13 C -0.003 4.003 14 C -0.192 4.192 15 C -0.113 4.113 16 C -0.204 4.204 17 C 0.079 3.921 18 C -0.534 4.534 19 H 0.090 0.910 20 C -0.178 4.178 21 N -0.454 5.454 22 Si 0.800 3.200 23 H -0.186 1.186 24 H -0.192 1.192 25 H -0.185 1.185 26 C -0.263 4.263 27 C -0.087 4.087 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.060 0.940 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.043 0.957 42 H 0.050 0.950 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.041 0.959 46 H 0.107 0.893 47 H 0.040 0.960 48 H 0.112 0.888 49 H 0.115 0.885 50 H 0.096 0.904 51 H 0.110 0.890 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.979 -13.858 -6.033 17.580 hybrid contribution 0.910 1.043 0.342 1.426 sum -8.068 -12.815 -5.691 16.178 Atomic orbital electron populations 1.21843 0.95030 1.01833 1.01440 1.21025 0.95260 0.96200 0.97696 1.22172 1.03472 0.95494 0.99664 1.21717 0.92497 1.01311 0.98704 1.21749 0.95267 0.88485 0.96830 0.94734 1.22303 0.86941 1.00525 0.96523 1.62165 1.09013 1.18528 1.38408 1.22380 1.01876 0.98740 0.89096 1.22044 0.99087 0.88681 0.96356 1.22039 0.89056 0.99412 0.96088 1.62526 1.06863 1.17816 1.36658 1.20794 0.99103 0.91018 0.89434 1.19225 0.97387 0.94779 1.07777 1.20696 0.95040 0.96109 0.99461 1.21215 1.00900 0.93428 1.04890 1.17918 0.91765 0.93634 0.88770 1.19808 0.92875 0.93880 1.46876 0.91015 1.26690 0.98239 1.00855 0.92064 1.69866 1.09122 1.30727 1.35714 0.85298 0.77104 0.77844 0.79724 1.18591 1.19219 1.18508 1.21167 0.99612 0.97587 1.07924 1.20603 0.98393 0.91944 0.97797 0.93230 0.92987 0.91883 0.91271 0.95031 0.94024 0.90309 0.91852 0.89871 0.88926 0.93708 0.91135 0.89938 0.95661 0.95040 0.90549 0.91802 0.95879 0.89313 0.96019 0.88830 0.88518 0.90364 0.89040 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.19 71.98 0.66 -1.81 16 2 C -0.08 -1.69 2.57 -10.79 -0.03 -1.72 16 3 C -0.15 -3.89 7.58 71.98 0.55 -3.35 16 4 C -0.10 -2.09 4.48 30.59 0.14 -1.95 16 5 C 0.09 2.07 2.23 44.92 0.10 2.17 16 6 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 7 C 0.06 1.42 4.42 86.31 0.38 1.80 16 8 N -0.56 -13.58 4.97 -921.93 -4.58 -18.16 16 9 C 0.03 0.51 9.63 127.69 1.23 1.74 16 10 C 0.07 1.92 5.62 86.31 0.48 2.41 16 11 C 0.06 2.09 4.80 86.31 0.41 2.50 16 12 N -0.51 -15.33 1.68 -875.05 -1.47 -16.81 16 13 C 0.12 4.01 4.04 85.56 0.35 4.36 16 14 C -0.19 -7.82 4.35 -19.67 -0.09 -7.90 16 15 C -0.09 -4.32 7.78 22.22 0.17 -4.15 16 16 C -0.18 -9.81 8.68 22.73 0.20 -9.62 16 17 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 18 C -0.50 -27.87 9.06 23.46 0.21 -27.66 16 19 H 0.07 3.84 7.89 -2.91 -0.02 3.81 16 20 C 0.04 1.84 5.18 85.26 0.44 2.28 16 21 N -0.83 -44.13 10.89 21.83 0.24 -43.90 16 22 Si 0.98 39.12 29.59 68.60 2.03 41.15 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 26 C -0.24 -12.10 9.80 22.73 0.22 -11.88 16 27 C -0.07 -2.97 9.67 22.22 0.21 -2.76 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.07 1.37 5.94 -2.39 -0.01 1.36 16 32 H 0.03 0.79 8.13 -2.39 -0.02 0.77 16 33 H 0.04 1.13 5.44 -2.39 -0.01 1.12 16 34 H 0.08 2.42 5.75 -2.39 -0.01 2.40 16 35 H 0.06 1.37 6.10 -2.39 -0.01 1.36 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.09 1.66 8.09 -2.39 -0.02 1.64 16 38 H 0.04 1.03 6.10 -2.38 -0.01 1.02 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.08 1.26 8.07 -2.39 -0.02 1.24 16 41 H 0.02 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.06 2.61 5.81 -2.39 -0.01 2.59 16 45 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 46 H 0.09 2.67 4.44 -2.39 -0.01 2.66 16 47 H 0.02 0.71 8.06 -2.39 -0.02 0.69 16 48 H 0.09 4.00 8.05 -2.91 -0.02 3.97 16 49 H 0.10 5.44 6.16 -2.91 -0.02 5.43 16 50 H 0.29 13.86 8.30 -92.71 -0.77 13.10 16 51 H 0.09 4.38 8.06 -2.91 -0.02 4.35 16 52 H 0.11 4.30 7.03 -2.91 -0.02 4.28 16 Total: -1.00 -57.70 381.93 2.62 -55.08 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.88 Total: 33.84 kcal Atomic # 6 Polarization: -56.72 SS G_CDS: 5.53 Total: -51.19 kcal Atomic # 7 Polarization: -73.05 SS G_CDS: -5.81 Total: -78.86 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -57.70 2.62 -55.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364814732.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.117 kcal (2) G-P(sol) polarization free energy of solvation -57.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds