Wall clock time and date at job start Tue Mar 31 2020 11:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46780 * 2 1 4 4 C 1.53001 * 109.46666 * 119.99732 * 2 1 3 5 5 C 1.52995 * 109.47297 * 65.00496 * 4 2 1 6 6 N 1.46902 * 109.47165 * 178.03014 * 5 4 2 7 7 C 1.46904 * 110.99768 * 287.92476 * 6 5 4 8 8 C 1.50707 * 109.46777 * 299.50673 * 7 6 5 9 9 H 1.07991 * 120.00140 * 4.54996 * 8 7 6 10 10 C 1.37877 * 119.99441 * 184.54798 * 8 7 6 11 11 N 1.31515 * 119.99434 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00344 * 359.97438 * 10 8 7 13 13 H 1.48492 * 109.47072 * 90.00187 * 12 10 8 14 14 H 1.48501 * 109.47114 * 210.00410 * 12 10 8 15 15 H 1.48497 * 109.47357 * 329.99980 * 12 10 8 16 16 C 1.46900 * 111.00200 * 163.97236 * 6 5 4 17 17 C 1.50697 * 109.47099 * 190.00007 * 16 6 5 18 18 C 1.37860 * 119.78948 * 259.99717 * 17 16 6 19 19 C 1.38265 * 119.95193 * 180.02562 * 18 17 16 20 20 C 1.38092 * 119.88947 * 0.14658 * 19 18 17 21 21 C 1.38569 * 120.48841 * 359.91071 * 20 19 18 22 22 C 1.38418 * 119.86013 * 359.56666 * 21 20 19 23 23 N 1.39404 * 122.94273 * 180.49395 * 22 21 20 24 24 C 1.46427 * 113.20217 * 340.14087 * 23 22 21 25 25 C 1.53376 * 108.66394 * 53.19447 * 24 23 22 26 26 C 1.50802 * 118.13382 * 179.63371 * 21 20 19 27 27 H 1.09000 * 109.47303 * 60.00519 * 1 2 3 28 28 H 1.08998 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47435 * 300.00195 * 1 2 3 30 30 H 1.08995 * 109.46925 * 239.99710 * 2 1 3 31 31 H 1.09008 * 109.46940 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47468 * 299.99544 * 3 2 1 33 33 H 1.08995 * 109.47628 * 60.00141 * 3 2 1 34 34 H 1.08997 * 109.47450 * 304.99778 * 4 2 1 35 35 H 1.09006 * 109.46745 * 185.00208 * 4 2 1 36 36 H 1.08994 * 109.47583 * 58.02371 * 5 4 2 37 37 H 1.09004 * 109.46708 * 298.02523 * 5 4 2 38 38 H 1.08997 * 109.47401 * 59.50599 * 7 6 5 39 39 H 1.08997 * 109.46979 * 179.50970 * 7 6 5 40 40 H 0.97009 * 119.99740 * 179.97438 * 11 10 8 41 41 H 1.08995 * 109.47152 * 69.99270 * 16 6 5 42 42 H 1.08997 * 109.46957 * 309.99757 * 16 6 5 43 43 H 1.07997 * 120.01988 * 0.02562 * 18 17 16 44 44 H 1.07998 * 120.05110 * 180.12890 * 19 18 17 45 45 H 1.08006 * 119.75351 * 179.97438 * 20 19 18 46 46 H 1.00899 * 110.77047 * 105.55831 * 23 22 21 47 47 H 1.09007 * 109.60209 * 293.44633 * 24 23 22 48 48 H 1.09000 * 109.60650 * 172.95585 * 24 23 22 49 49 H 1.08997 * 109.76688 * 172.17598 * 25 24 23 50 50 H 1.09000 * 109.80420 * 51.43173 * 25 24 23 51 51 H 1.09003 * 109.44104 * 284.48003 * 26 21 20 52 52 H 1.09008 * 109.43579 * 44.35859 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 7 2.1651 -2.8979 2.3644 7 6 3.6217 -3.0628 2.2672 8 6 3.9546 -3.8741 1.0415 9 1 3.1707 -4.1688 0.3597 10 6 5.2601 -4.2398 0.7907 11 7 5.5507 -4.9473 -0.2792 12 14 6.6161 -3.7293 1.9696 13 1 6.7852 -4.7736 3.0116 14 1 7.8881 -3.5668 1.2206 15 1 6.2532 -2.4414 2.6137 16 6 1.4996 -4.1947 2.5472 17 6 1.8849 -4.7730 3.8844 18 6 2.8606 -5.7444 3.9550 19 6 3.2164 -6.2776 5.1801 20 6 2.5910 -5.8377 6.3299 21 6 1.6085 -4.8625 6.2667 22 6 1.2561 -4.3175 5.0441 23 7 0.2847 -3.3270 4.9074 24 6 -0.6256 -3.2499 6.0517 25 6 0.2066 -3.1109 7.3325 26 6 0.9546 -4.4274 7.5541 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6053 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2953 36 1 2.0408 -2.6462 0.2824 37 1 0.5481 -2.2735 1.1774 38 1 4.0942 -2.0833 2.1939 39 1 3.9890 -3.5780 3.1547 40 1 6.4693 -5.2043 -0.4559 41 1 1.8075 -4.8761 1.7542 42 1 0.4190 -4.0571 2.5087 43 1 3.3467 -6.0885 3.0541 44 1 3.9820 -7.0372 5.2375 45 1 2.8703 -6.2560 7.2857 46 1 0.7107 -2.4310 4.7233 47 1 -1.2265 -4.1579 6.1028 48 1 -1.2772 -2.3829 5.9429 49 1 -0.4504 -2.9130 8.1794 50 1 0.9211 -2.2951 7.2220 51 1 0.2514 -5.1936 7.8808 52 1 1.7181 -4.2866 8.3192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474339867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:04 Heat of formation + Delta-G solvation = 6.978792 kcal Electronic energy + Delta-G solvation = -27919.307310 eV Core-core repulsion = 24496.241970 eV Total energy + Delta-G solvation = -3423.065340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.07030 -37.58487 -36.29673 -35.32358 -33.15775 -32.24421 -30.11608 -29.89490 -28.50613 -27.22832 -26.90172 -24.50636 -24.22781 -22.89761 -22.76632 -20.85526 -19.71813 -19.38443 -19.17350 -16.87472 -16.65262 -15.71693 -15.40193 -15.16411 -14.74461 -14.44796 -14.27842 -14.08887 -13.77707 -13.61343 -13.51391 -13.07336 -12.92431 -12.73236 -12.42910 -12.30273 -12.15659 -12.03294 -11.91727 -11.57004 -11.36656 -11.19386 -11.10355 -10.95808 -10.90664 -10.74651 -10.53694 -10.37027 -10.31373 -10.20000 -10.09297 -9.89544 -9.65106 -9.46544 -9.12863 -8.55495 -8.11382 -7.50387 -7.07804 -6.07994 -4.05729 1.84008 1.86454 3.28831 3.36647 3.41428 4.13519 4.35868 4.42195 4.83408 4.87349 4.92651 5.00567 5.25383 5.26286 5.26861 5.31591 5.41159 5.44066 5.56183 5.62945 5.67673 5.74730 5.81791 5.82490 5.86419 5.93634 5.99564 6.03077 6.04063 6.12166 6.14641 6.22257 6.25604 6.31723 6.33838 6.45729 6.54494 6.59722 6.66677 6.72666 6.82171 6.86760 6.93575 7.00689 7.04245 7.15135 7.21314 7.38045 7.52383 7.64557 7.79833 8.14395 8.21873 8.48814 8.95626 9.56427 11.04812 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008853 B = 0.005852 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.979847 B = 4783.906956 C = 7141.543471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.102 4.102 5 C 0.059 3.941 6 N -0.528 5.528 7 C 0.151 3.849 8 C -0.541 4.541 9 H 0.075 0.925 10 C 0.075 3.925 11 N -0.900 5.900 12 Si 0.871 3.129 13 H -0.276 1.276 14 H -0.289 1.289 15 H -0.266 1.266 16 C 0.104 3.896 17 C -0.065 4.065 18 C -0.087 4.087 19 C -0.143 4.143 20 C -0.113 4.113 21 C -0.141 4.141 22 C 0.128 3.872 23 N -0.629 5.629 24 C 0.059 3.941 25 C -0.158 4.158 26 C -0.071 4.071 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.025 0.975 39 H 0.026 0.974 40 H 0.262 0.738 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.131 0.869 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.366 0.634 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.069 0.931 50 H 0.064 0.936 51 H 0.069 0.931 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.858 5.279 11.239 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.140 4.140 5 C -0.069 4.069 6 N -0.251 5.251 7 C 0.024 3.976 8 C -0.579 4.579 9 H 0.093 0.907 10 C -0.128 4.128 11 N -0.538 5.538 12 Si 0.698 3.302 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.190 1.190 16 C -0.024 4.024 17 C -0.067 4.067 18 C -0.106 4.106 19 C -0.162 4.162 20 C -0.132 4.132 21 C -0.144 4.144 22 C 0.030 3.970 23 N -0.258 5.258 24 C -0.070 4.070 25 C -0.197 4.197 26 C -0.109 4.109 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.149 0.851 44 H 0.133 0.867 45 H 0.128 0.872 46 H 0.194 0.806 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.083 0.917 51 H 0.087 0.913 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.270 5.183 11.182 16.700 hybrid contribution 1.804 -0.058 0.451 1.861 sum -9.465 5.125 11.633 15.849 Atomic orbital electron populations 1.21855 0.95830 1.01686 1.00741 1.21099 0.95353 0.95737 0.99454 1.21812 1.01015 0.96415 1.00863 1.21513 1.01219 0.95119 0.96113 1.22007 0.97660 0.93510 0.93732 1.62402 1.06283 1.18160 1.38216 1.20201 0.84694 0.96356 0.96345 1.21632 0.94393 1.33673 1.08252 0.90714 1.24901 0.98540 0.94420 0.94904 1.69929 1.19349 1.37976 1.26572 0.86915 0.81827 0.79946 0.81490 1.20152 1.21504 1.19020 1.20778 0.97776 0.91421 0.92395 1.19786 0.96513 0.96065 0.94352 1.21190 0.95557 0.95679 0.98170 1.20983 1.00930 1.01459 0.92787 1.20788 0.96868 0.97605 0.97927 1.19738 0.99696 1.01221 0.93752 1.18191 0.92204 0.95208 0.91396 1.56910 1.20181 1.09870 1.38840 1.22058 0.94851 1.02457 0.87616 1.22256 0.99887 0.97862 0.99710 1.20411 0.98838 0.96787 0.94823 0.93607 0.92432 0.93112 0.91239 0.92811 0.93366 0.93136 0.92568 0.91784 0.93084 0.92811 0.95729 0.95641 0.92831 0.93099 0.91077 0.85074 0.86749 0.87159 0.80624 0.90799 0.90453 0.91273 0.91678 0.91302 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 8.95 37.16 0.33 -1.45 16 2 C -0.10 -1.38 2.92 -90.62 -0.26 -1.65 16 3 C -0.14 -1.81 9.19 37.16 0.34 -1.46 16 4 C -0.10 -1.67 4.76 -26.73 -0.13 -1.80 16 5 C 0.06 1.08 4.51 -3.83 -0.02 1.06 16 6 N -0.53 -10.35 4.66 -237.52 -1.11 -11.46 16 7 C 0.15 3.51 3.79 -4.97 -0.02 3.49 16 8 C -0.54 -14.41 7.90 -34.44 -0.27 -14.68 16 9 H 0.07 2.17 6.19 -52.49 -0.33 1.85 16 10 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 11 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 12 Si 0.87 21.48 27.38 -169.99 -4.65 16.83 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.27 -6.40 6.67 56.52 0.38 -6.02 16 16 C 0.10 1.99 4.45 -4.98 -0.02 1.97 16 17 C -0.06 -1.20 4.61 -104.27 -0.48 -1.68 16 18 C -0.09 -1.65 8.60 -39.71 -0.34 -2.00 16 19 C -0.14 -2.39 10.05 -39.62 -0.40 -2.79 16 20 C -0.11 -1.71 9.63 -39.51 -0.38 -2.09 16 21 C -0.14 -2.11 5.74 -104.38 -0.60 -2.71 16 22 C 0.13 2.10 6.11 -83.85 -0.51 1.58 16 23 N -0.63 -8.91 5.44 -58.51 -0.32 -9.23 16 24 C 0.06 0.66 6.61 -3.89 -0.03 0.63 16 25 C -0.16 -1.63 6.19 -26.52 -0.16 -1.79 16 26 C -0.07 -0.83 5.81 -27.82 -0.16 -0.99 16 27 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.74 6.61 -51.93 -0.34 0.39 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.20 6.69 -51.93 -0.35 0.85 16 36 H 0.05 1.10 6.12 -51.93 -0.32 0.78 16 37 H 0.05 0.90 6.33 -51.93 -0.33 0.57 16 38 H 0.02 0.60 6.02 -51.93 -0.31 0.29 16 39 H 0.03 0.62 5.62 -51.93 -0.29 0.33 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.05 1.11 6.47 -51.93 -0.34 0.78 16 42 H 0.07 1.28 7.41 -51.93 -0.38 0.90 16 43 H 0.13 2.75 8.02 -52.49 -0.42 2.32 16 44 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 45 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 46 H 0.37 5.29 8.83 -39.29 -0.35 4.94 16 47 H 0.07 0.84 8.11 -51.92 -0.42 0.41 16 48 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -28.57 392.15 -11.86 -40.43 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -9.25 Total: 7.96 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: -3.21 Total: -24.35 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -0.65 Total: -46.77 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.65 Total: 16.83 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.57 -11.86 -40.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474339867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.407 kcal (2) G-P(sol) polarization free energy of solvation -28.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds