Wall clock time and date at job start Tue Mar 31 2020 11:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46780 * 2 1 4 4 C 1.53001 * 109.46666 * 119.99732 * 2 1 3 5 5 C 1.52995 * 109.47297 * 65.00496 * 4 2 1 6 6 N 1.46902 * 109.47165 * 178.03014 * 5 4 2 7 7 C 1.46904 * 110.99768 * 287.92476 * 6 5 4 8 8 C 1.50707 * 109.46777 * 299.50673 * 7 6 5 9 9 H 1.07991 * 120.00140 * 4.54996 * 8 7 6 10 10 C 1.37877 * 119.99441 * 184.54798 * 8 7 6 11 11 N 1.31515 * 119.99434 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00344 * 359.97438 * 10 8 7 13 13 H 1.48492 * 109.47072 * 90.00187 * 12 10 8 14 14 H 1.48501 * 109.47114 * 210.00410 * 12 10 8 15 15 H 1.48497 * 109.47357 * 329.99980 * 12 10 8 16 16 C 1.46900 * 111.00200 * 163.97236 * 6 5 4 17 17 C 1.50697 * 109.47099 * 190.00007 * 16 6 5 18 18 C 1.37860 * 119.78948 * 259.99717 * 17 16 6 19 19 C 1.38265 * 119.95193 * 180.02562 * 18 17 16 20 20 C 1.38092 * 119.88947 * 0.14658 * 19 18 17 21 21 C 1.38569 * 120.48841 * 359.91071 * 20 19 18 22 22 C 1.38418 * 119.86013 * 359.56666 * 21 20 19 23 23 N 1.39404 * 122.94273 * 180.49395 * 22 21 20 24 24 C 1.46427 * 113.20217 * 340.14087 * 23 22 21 25 25 C 1.53376 * 108.66394 * 53.19447 * 24 23 22 26 26 C 1.50802 * 118.13382 * 179.63371 * 21 20 19 27 27 H 1.09000 * 109.47303 * 60.00519 * 1 2 3 28 28 H 1.08998 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47435 * 300.00195 * 1 2 3 30 30 H 1.08995 * 109.46925 * 239.99710 * 2 1 3 31 31 H 1.09008 * 109.46940 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47468 * 299.99544 * 3 2 1 33 33 H 1.08995 * 109.47628 * 60.00141 * 3 2 1 34 34 H 1.08997 * 109.47450 * 304.99778 * 4 2 1 35 35 H 1.09006 * 109.46745 * 185.00208 * 4 2 1 36 36 H 1.08994 * 109.47583 * 58.02371 * 5 4 2 37 37 H 1.09004 * 109.46708 * 298.02523 * 5 4 2 38 38 H 1.08997 * 109.47401 * 59.50599 * 7 6 5 39 39 H 1.08997 * 109.46979 * 179.50970 * 7 6 5 40 40 H 0.97009 * 119.99740 * 179.97438 * 11 10 8 41 41 H 1.08995 * 109.47152 * 69.99270 * 16 6 5 42 42 H 1.08997 * 109.46957 * 309.99757 * 16 6 5 43 43 H 1.07997 * 120.01988 * 0.02562 * 18 17 16 44 44 H 1.07998 * 120.05110 * 180.12890 * 19 18 17 45 45 H 1.08006 * 119.75351 * 179.97438 * 20 19 18 46 46 H 1.00899 * 110.77047 * 105.55831 * 23 22 21 47 47 H 1.09007 * 109.60209 * 293.44633 * 24 23 22 48 48 H 1.09000 * 109.60650 * 172.95585 * 24 23 22 49 49 H 1.08997 * 109.76688 * 172.17598 * 25 24 23 50 50 H 1.09000 * 109.80420 * 51.43173 * 25 24 23 51 51 H 1.09003 * 109.44104 * 284.48003 * 26 21 20 52 52 H 1.09008 * 109.43579 * 44.35859 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 7 2.1651 -2.8979 2.3644 7 6 3.6217 -3.0628 2.2672 8 6 3.9546 -3.8741 1.0415 9 1 3.1707 -4.1688 0.3597 10 6 5.2601 -4.2398 0.7907 11 7 5.5507 -4.9473 -0.2792 12 14 6.6161 -3.7293 1.9696 13 1 6.7852 -4.7736 3.0116 14 1 7.8881 -3.5668 1.2206 15 1 6.2532 -2.4414 2.6137 16 6 1.4996 -4.1947 2.5472 17 6 1.8849 -4.7730 3.8844 18 6 2.8606 -5.7444 3.9550 19 6 3.2164 -6.2776 5.1801 20 6 2.5910 -5.8377 6.3299 21 6 1.6085 -4.8625 6.2667 22 6 1.2561 -4.3175 5.0441 23 7 0.2847 -3.3270 4.9074 24 6 -0.6256 -3.2499 6.0517 25 6 0.2066 -3.1109 7.3325 26 6 0.9546 -4.4274 7.5541 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6053 -0.2617 2.1370 35 1 3.1263 -0.6443 1.2953 36 1 2.0408 -2.6462 0.2824 37 1 0.5481 -2.2735 1.1774 38 1 4.0942 -2.0833 2.1939 39 1 3.9890 -3.5780 3.1547 40 1 6.4693 -5.2043 -0.4559 41 1 1.8075 -4.8761 1.7542 42 1 0.4190 -4.0571 2.5087 43 1 3.3467 -6.0885 3.0541 44 1 3.9820 -7.0372 5.2375 45 1 2.8703 -6.2560 7.2857 46 1 0.7107 -2.4310 4.7233 47 1 -1.2265 -4.1579 6.1028 48 1 -1.2772 -2.3829 5.9429 49 1 -0.4504 -2.9130 8.1794 50 1 0.9211 -2.2951 7.2220 51 1 0.2514 -5.1936 7.8808 52 1 1.7181 -4.2866 8.3192 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001474339867.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:03 Heat of formation + Delta-G solvation = -8.773830 kcal Electronic energy + Delta-G solvation = -27919.990395 eV Core-core repulsion = 24496.241970 eV Total energy + Delta-G solvation = -3423.748425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.27960 -39.09376 -37.43867 -36.65198 -34.69507 -34.01666 -31.29680 -31.09424 -30.24081 -28.80400 -27.92745 -25.95562 -25.39915 -24.61018 -23.85266 -22.20231 -21.03675 -20.74059 -20.52124 -18.95288 -17.84550 -16.97304 -16.72423 -16.65661 -16.23340 -16.03623 -15.57561 -15.41969 -15.06586 -14.80840 -14.67403 -14.49763 -14.31611 -14.01969 -13.79206 -13.64898 -13.43770 -13.24914 -13.14829 -13.01643 -12.82112 -12.70514 -12.49423 -12.30457 -12.21220 -12.04995 -11.96906 -11.84472 -11.75860 -11.68788 -11.40818 -11.38873 -11.28658 -11.14559 -10.75542 -10.26129 -9.43818 -8.89873 -8.65698 -8.29875 -6.30767 0.52811 0.57592 1.29701 1.31019 1.41789 2.31674 2.82263 3.06291 3.28285 3.48743 3.87293 3.93050 4.08365 4.08775 4.11645 4.13801 4.20880 4.28576 4.49195 4.52455 4.53111 4.60669 4.66733 4.72159 4.80532 4.85249 4.86627 4.88460 4.91246 4.97372 4.99938 5.05411 5.06290 5.09572 5.13511 5.18696 5.21124 5.28542 5.29442 5.30984 5.34968 5.43321 5.50448 5.58102 5.59484 5.65725 5.66122 5.80199 6.06933 6.15963 6.39638 6.44948 6.52069 6.62264 6.75448 7.34474 8.86421 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.008853 B = 0.005852 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.979847 B = 4783.906956 C = 7141.543471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.139 4.139 4 C -0.093 4.093 5 C 0.063 3.937 6 N -0.512 5.512 7 C 0.167 3.833 8 C -0.528 4.528 9 H 0.036 0.964 10 C 0.018 3.982 11 N -0.946 5.946 12 Si 0.931 3.069 13 H -0.270 1.270 14 H -0.285 1.285 15 H -0.252 1.252 16 C 0.116 3.884 17 C -0.088 4.088 18 C -0.114 4.114 19 C -0.152 4.152 20 C -0.108 4.108 21 C -0.140 4.140 22 C 0.128 3.872 23 N -0.636 5.636 24 C 0.058 3.942 25 C -0.152 4.152 26 C -0.071 4.071 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.010 0.990 37 H 0.075 0.925 38 H 0.022 0.978 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.009 0.991 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.126 0.874 45 H 0.143 0.857 46 H 0.364 0.636 47 H 0.073 0.927 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.058 0.942 51 H 0.085 0.915 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.384 7.346 14.976 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 C -0.197 4.197 4 C -0.131 4.131 5 C -0.065 4.065 6 N -0.234 5.234 7 C 0.039 3.961 8 C -0.567 4.567 9 H 0.054 0.946 10 C -0.179 4.179 11 N -0.587 5.587 12 Si 0.756 3.244 13 H -0.195 1.195 14 H -0.211 1.211 15 H -0.176 1.176 16 C -0.012 4.012 17 C -0.091 4.091 18 C -0.133 4.133 19 C -0.171 4.171 20 C -0.126 4.126 21 C -0.143 4.143 22 C 0.029 3.971 23 N -0.265 5.265 24 C -0.071 4.071 25 C -0.191 4.191 26 C -0.108 4.108 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.028 0.972 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.027 0.973 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.144 0.856 45 H 0.161 0.839 46 H 0.192 0.808 47 H 0.091 0.909 48 H 0.117 0.883 49 H 0.116 0.884 50 H 0.077 0.923 51 H 0.103 0.897 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -12.823 7.266 14.931 20.980 hybrid contribution 2.139 -0.752 -0.733 2.383 sum -10.684 6.514 14.198 18.926 Atomic orbital electron populations 1.21800 0.93905 1.01597 1.02245 1.21080 0.96967 0.96458 0.97145 1.21773 1.00363 0.95156 1.02388 1.21444 0.99628 0.93794 0.98204 1.22038 0.98589 0.94520 0.91329 1.62452 1.04253 1.18341 1.38350 1.19926 0.87029 0.95012 0.94111 1.21784 0.93370 1.33068 1.08512 0.94598 1.25699 1.01086 0.94651 0.96513 1.70069 1.19908 1.39969 1.28755 0.85937 0.78816 0.80171 0.79479 1.19488 1.21066 1.17571 1.20639 0.98166 0.90162 0.92191 1.19745 0.97736 0.96926 0.94675 1.21005 0.96917 0.97427 0.97969 1.21144 1.01599 1.01865 0.92502 1.21163 0.96052 0.96958 0.98446 1.20214 0.99060 1.00221 0.94810 1.18261 0.92161 0.95624 0.91018 1.56847 1.19746 1.09148 1.40806 1.22199 0.94463 1.03444 0.86967 1.22218 0.99861 0.96863 1.00109 1.20523 0.99506 0.97870 0.92921 0.92105 0.93313 0.91603 0.93557 0.93880 0.91785 0.91647 0.90695 0.94441 0.97187 0.90703 0.96037 0.96153 0.92799 0.97258 0.89767 0.88850 0.85622 0.83886 0.80771 0.90890 0.88297 0.88432 0.92301 0.89684 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.95 71.98 0.64 -2.53 16 2 C -0.10 -2.72 2.92 -10.79 -0.03 -2.75 16 3 C -0.14 -3.28 9.19 71.98 0.66 -2.62 16 4 C -0.09 -3.04 4.76 30.59 0.15 -2.90 16 5 C 0.06 2.40 4.51 86.30 0.39 2.79 16 6 N -0.51 -20.73 4.66 -905.37 -4.22 -24.95 16 7 C 0.17 8.05 3.79 85.56 0.32 8.37 16 8 C -0.53 -30.04 7.90 25.60 0.20 -29.84 16 9 H 0.04 2.29 6.19 -2.91 -0.02 2.27 16 10 C 0.02 1.07 5.47 84.65 0.46 1.54 16 11 N -0.95 -59.57 13.96 21.45 0.30 -59.27 16 12 Si 0.93 45.49 27.38 68.60 1.88 47.37 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 15 H -0.25 -11.66 6.67 99.48 0.66 -10.99 16 16 C 0.12 4.70 4.45 85.56 0.38 5.08 16 17 C -0.09 -3.36 4.61 -19.63 -0.09 -3.45 16 18 C -0.11 -4.57 8.60 22.19 0.19 -4.38 16 19 C -0.15 -5.09 10.05 22.24 0.22 -4.86 16 20 C -0.11 -3.00 9.63 22.31 0.21 -2.78 16 21 C -0.14 -3.81 5.74 -19.71 -0.11 -3.93 16 22 C 0.13 4.03 6.11 38.30 0.23 4.26 16 23 N -0.64 -16.71 5.44 -339.03 -1.84 -18.56 16 24 C 0.06 1.07 6.61 86.52 0.57 1.64 16 25 C -0.15 -2.45 6.19 30.73 0.19 -2.26 16 26 C -0.07 -1.33 5.81 29.89 0.17 -1.16 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 1.19 6.61 -2.39 -0.02 1.17 16 29 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.04 1.42 6.69 -2.38 -0.02 1.40 16 36 H 0.01 0.46 6.12 -2.39 -0.01 0.44 16 37 H 0.07 2.52 6.33 -2.39 -0.02 2.50 16 38 H 0.02 1.06 6.02 -2.39 -0.01 1.05 16 39 H 0.02 1.02 5.62 -2.39 -0.01 1.00 16 40 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 41 H 0.01 0.44 6.47 -2.39 -0.02 0.43 16 42 H 0.08 3.12 7.41 -2.39 -0.02 3.11 16 43 H 0.09 4.34 8.02 -2.91 -0.02 4.32 16 44 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 45 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 46 H 0.36 9.75 8.83 -89.69 -0.79 8.96 16 47 H 0.07 1.39 8.11 -2.38 -0.02 1.37 16 48 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 51 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 52 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -66.53 392.15 0.94 -65.59 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.05 Total: 29.61 kcal Atomic # 6 Polarization: -44.56 SS G_CDS: 4.77 Total: -39.78 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -5.76 Total: -102.78 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -66.53 0.94 -65.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474339867.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.813 kcal (2) G-P(sol) polarization free energy of solvation -66.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds